ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RT22_HUMAN (P82650) Mitochondrial 28S ribosomal protein S22 (S22... 32 0.83
2VG54_BPT4 (P13341) Tail-tube assembly protein Gp54 28 9.2
3TLK2_HUMAN (Q86UE8) Serine/threonine-protein kinase tousled-like... 28 9.2
4TLK2_MOUSE (O55047) Serine/threonine-protein kinase tousled-like... 28 9.2
5GERKB_BACSU (P49940) Spore germination protein KB 28 9.2

>RT22_HUMAN (P82650) Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22)|
          Length = 360

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 380 LAQPVSCSQTIKHQRTRFRKFCATYRVPEKRQPVFLYEKVEIVETR 243
           L QP+ CS  +   R RF    A    PE ++P F+ E+V+ + T+
Sbjct: 36  LLQPLPCSFEMGLPRRRFSSEAAESGSPETKKPTFMDEEVQSILTK 81



to top

>VG54_BPT4 (P13341) Tail-tube assembly protein Gp54|
          Length = 320

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 181 FKRSFIYLCYFPFVSLRMVLRLVSTISTFSYKNTG 285
           F+R+ ++ C F          L+S+IS FSY N G
Sbjct: 16  FQRNNMFSCVFATTPSTKSSSLISSISNFSYNNLG 50



to top

>TLK2_HUMAN (Q86UE8) Serine/threonine-protein kinase tousled-like 2 (EC|
           2.7.11.1) (Tousled-like kinase 2) (PKU-alpha)
          Length = 772

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 331 DSESFVPPTVYLRNDNLYFYMRK*KLLRQDEAPS*ATQMEN 209
           D++SF     Y   ++L FY+++ KL+ + EA S   Q+ N
Sbjct: 536 DTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVN 576



to top

>TLK2_MOUSE (O55047) Serine/threonine-protein kinase tousled-like 2 (EC|
           2.7.11.1) (Tousled-like kinase 2)
          Length = 718

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 331 DSESFVPPTVYLRNDNLYFYMRK*KLLRQDEAPS*ATQMEN 209
           D++SF     Y   ++L FY+++ KL+ + EA S   Q+ N
Sbjct: 482 DTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVN 522



to top

>GERKB_BACSU (P49940) Spore germination protein KB|
          Length = 373

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 190 SFIYLCYFPFVSLRMVLRLVSTISTFSYKNT 282
           SF+Y+ YF +++ R++      + TF+Y +T
Sbjct: 83  SFLYILYFAYIAARVLRDFGEMLLTFAYHDT 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,062,993
Number of Sequences: 219361
Number of extensions: 1124162
Number of successful extensions: 2057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2057
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top