ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45a06 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 105 bits (261), Expect = 6e-23 Identities = 51/64 (79%), Positives = 54/64 (84%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFGSRLV+IE RI DMN + LKNRNGPVKMPYMLLYPNTSD EK GLTAMGIPN Sbjct: 814 FKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873 Query: 244 SVSI 233 S+SI Sbjct: 874 SISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 94.0 bits (232), Expect = 1e-19 Identities = 46/64 (71%), Positives = 50/64 (78%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRF RLVEIE +++ MN DP LKNRNGP K PYMLLYPNTSD G A GLTA GIPN Sbjct: 800 FKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKG-AAAGLTAKGIPN 858 Query: 244 SVSI 233 S+SI Sbjct: 859 SISI 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 87.8 bits (216), Expect = 1e-17 Identities = 43/64 (67%), Positives = 49/64 (76%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFG+RL EIE R++ MNKDP KNR GP PY LLYPNTSD G+ A GL+A GIPN Sbjct: 808 FKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGD-AAGLSARGIPN 866 Query: 244 SVSI 233 S+SI Sbjct: 867 SISI 870
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 86.7 bits (213), Expect = 2e-17 Identities = 42/64 (65%), Positives = 49/64 (76%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F+RF RLVEIE +++ MN D LKNRNGP + PYMLLYPNTSD G A G+TA GIPN Sbjct: 804 FRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTG-AAAGITAKGIPN 862 Query: 244 SVSI 233 S+SI Sbjct: 863 SISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 84.7 bits (208), Expect = 8e-17 Identities = 41/64 (64%), Positives = 49/64 (76%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRF +LVEIE ++L+MNKDP LKNR GP PY L++PNTSD G A G+TA GIPN Sbjct: 801 FKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKG-AAEGITARGIPN 859 Query: 244 SVSI 233 S+SI Sbjct: 860 SISI 863
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 77.0 bits (188), Expect = 2e-14 Identities = 37/64 (57%), Positives = 47/64 (73%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFG +L EIEK++++ NKD TL+NR GP KMPY LLYP++ + GLT GIPN Sbjct: 797 FKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEE-------GLTFRGIPN 849 Query: 244 SVSI 233 S+SI Sbjct: 850 SISI 853
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 74.3 bits (181), Expect = 1e-13 Identities = 37/64 (57%), Positives = 45/64 (70%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFG +L EIE++I+ NKD +L+NRNGPVKMPY +L P D GLT GIPN Sbjct: 805 FKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDE------GLTFRGIPN 858 Query: 244 SVSI 233 S+SI Sbjct: 859 SISI 862
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 73.2 bits (178), Expect = 2e-13 Identities = 35/64 (54%), Positives = 45/64 (70%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFG +L EIE+++ N D +L+NR GPVKMPY LLYP++ + GLT GIPN Sbjct: 810 FKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEE-------GLTCRGIPN 862 Query: 244 SVSI 233 S+SI Sbjct: 863 SISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 72.0 bits (175), Expect = 5e-13 Identities = 34/64 (53%), Positives = 46/64 (71%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FK+FG++L EIEK++ N D L+NR+GPV+MPY LLYP++ + GLT GIPN Sbjct: 805 FKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE-------GLTFRGIPN 857 Query: 244 SVSI 233 S+SI Sbjct: 858 SISI 861
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 65.9 bits (159), Expect = 4e-11 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFG++L +IE ++ + N D L+NR GPV+MPY LL P++ + GLT GIPN Sbjct: 801 FKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE-------GLTFRGIPN 853 Query: 244 SVSI 233 S+SI Sbjct: 854 SISI 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 65.5 bits (158), Expect = 5e-11 Identities = 34/64 (53%), Positives = 43/64 (67%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F++FG ++ EIEK I + N D TLKNR G VKMPY LL+P++ G+T GIPN Sbjct: 803 FEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEG-------GVTGRGIPN 855 Query: 244 SVSI 233 SVSI Sbjct: 856 SVSI 859
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 65.1 bits (157), Expect = 7e-11 Identities = 33/64 (51%), Positives = 44/64 (68%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 FKRFGS+L IE +I N DP+L+NR GPV++PY LL+ ++ + GLT GIPN Sbjct: 808 FKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEE-------GLTFKGIPN 860 Query: 244 SVSI 233 S+SI Sbjct: 861 SISI 864
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 64.7 bits (156), Expect = 9e-11 Identities = 31/58 (53%), Positives = 39/58 (67%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGI 251 FKRFG +L EIEK+++ N D TL+NR GP KMPY LLYP++ + GLT GI Sbjct: 691 FKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEE-------GLTFRGI 741
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 64.7 bits (156), Expect = 9e-11 Identities = 33/64 (51%), Positives = 42/64 (65%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F+RFG L +IE RI+ MN + KNR+GPV +PY LL+P + + GLT GIPN Sbjct: 803 FERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEE-------GLTGKGIPN 855 Query: 244 SVSI 233 SVSI Sbjct: 856 SVSI 859
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 64.3 bits (155), Expect = 1e-10 Identities = 32/65 (49%), Positives = 48/65 (73%), Gaps = 1/65 (1%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLK-NRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIP 248 F++FG++L EIE++++ N DP+L+ NR GPV++PY LLYP++ + GLT GIP Sbjct: 782 FQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE-------GLTFRGIP 834 Query: 247 NSVSI 233 NS+SI Sbjct: 835 NSISI 839
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 64.3 bits (155), Expect = 1e-10 Identities = 31/64 (48%), Positives = 44/64 (68%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F++FG++L EIE+++ N D +L NR GPV++PY LL+PN+ GLT GIPN Sbjct: 810 FQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE--------GLTCRGIPN 861 Query: 244 SVSI 233 S+SI Sbjct: 862 SISI 865
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 64.3 bits (155), Expect = 1e-10 Identities = 30/64 (46%), Positives = 46/64 (71%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F++FG++L EIE ++ + N DP+L +R GPV++PY LL+P++ + GLT GIPN Sbjct: 808 FQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE-------GLTFRGIPN 860 Query: 244 SVSI 233 S+SI Sbjct: 861 SISI 864
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 63.9 bits (154), Expect = 1e-10 Identities = 33/64 (51%), Positives = 40/64 (62%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F RFG +L +IEK+I+ N D L NR+GPV PY LL+P + GLT GIPN Sbjct: 805 FDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG-------GLTGKGIPN 857 Query: 244 SVSI 233 SVSI Sbjct: 858 SVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 62.8 bits (151), Expect = 3e-10 Identities = 32/64 (50%), Positives = 41/64 (64%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F+RFG++L +IEK+I+ N + L NR GPV PY LL+P + GLT GIPN Sbjct: 804 FERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG-------GLTGKGIPN 856 Query: 244 SVSI 233 SVSI Sbjct: 857 SVSI 860
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 47.4 bits (111), Expect = 1e-05 Identities = 32/61 (52%), Positives = 36/61 (59%) Frame = -2 Query: 415 FGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNSVS 236 F +RL EIE I NKD LKNR G +PY L+ P SDA G+T MGIPNS S Sbjct: 888 FTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP-FSDA------GVTGMGIPNSTS 940 Query: 235 I 233 I Sbjct: 941 I 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 47.0 bits (110), Expect = 2e-05 Identities = 29/61 (47%), Positives = 34/61 (55%) Frame = -2 Query: 415 FGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNSVS 236 F +RL EIE I NKD LKNR G +PY L+ P + G+T MGIPNS S Sbjct: 871 FAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDS-------GVTGMGIPNSTS 923 Query: 235 I 233 I Sbjct: 924 I 924
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 44.7 bits (104), Expect = 9e-05 Identities = 24/64 (37%), Positives = 40/64 (62%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F+ F ++ +I +++ + NKD + +NR+G +PY+LL P + N A + MGIPN Sbjct: 871 FQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP--LNGNPMDAKTVMEMGIPN 928 Query: 244 SVSI 233 S+SI Sbjct: 929 SISI 932
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 43.1 bits (100), Expect = 3e-04 Identities = 27/64 (42%), Positives = 34/64 (53%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F++F RL E E I N +P KNR G +PY LL P + G+T GIPN Sbjct: 840 FEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEP-------GVTGRGIPN 892 Query: 244 SVSI 233 S+SI Sbjct: 893 SISI 896
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYP---NTSDANGEKALGLTAMG 254 F+ F +I +++ + N DP KNR+G +PY+LL P + +D + + MG Sbjct: 870 FEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMG 929 Query: 253 IPNSVSI 233 IPNS+SI Sbjct: 930 IPNSISI 936
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 40.0 bits (92), Expect = 0.002 Identities = 25/64 (39%), Positives = 35/64 (54%) Frame = -2 Query: 424 FKRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPN 245 F+RF +L +E I + N + TLKNR G + Y LL P + G+T MG+P Sbjct: 840 FERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEH-------GVTGMGVPY 892 Query: 244 SVSI 233 S+SI Sbjct: 893 SISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -2 Query: 421 KRFGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNS 242 + F + + E+ I N DP+ +NR G +PY L+ P++ G+T G+PNS Sbjct: 844 REFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGP-------GITCRGVPNS 896 Query: 241 VSI 233 V+I Sbjct: 897 VTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.4 bits (80), Expect = 0.056 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = -2 Query: 415 FGSRLVEIEKRILDMNKDPTLKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNSVS 236 F + + E+ I N D KNR G +PY LL P++ G+T G+PNS+S Sbjct: 865 FAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPP-------GVTCRGVPNSIS 917 Query: 235 I 233 I Sbjct: 918 I 918
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 31.6 bits (70), Expect = 0.81 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 308 G T+ + RP S Q SP+ +P + G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 31.2 bits (69), Expect = 1.1 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 308 G T+ + RP S Q SP+ +P G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSG 323
>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) Length = 487 Score = 31.2 bits (69), Expect = 1.1 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV----------TQYTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K+ Q T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSIPGIPGPSSPQPVQSEAKLRLKAALTQQHPQVTNGDTAKGHPS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 G T+ + RP S Q SP+ Sbjct: 283 GLVRTQSEEPRPQSLQQPATSTTETPASPA 312
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 38 LSSPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 154 L+ Y HH H+HH PS +P+ L A P ++ +H Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214
>CMGA_PIG (P04404) Chromogranin A precursor (CgA) [Contains: Pancreastatin;| Parastatin; WE-14] (Fragment) Length = 446 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 395 DREADPRHEQGPDAQEPERAREDALHAAVPQ 303 DRE P EQGP A+ E +A AVP+ Sbjct: 203 DREKGPSAEQGPQAEREEEEEAEAGEKAVPE 233
>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1138 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +3 Query: 237 ETLLGMPMAVSPSAFSPLASDVLGYSSM*GIFTGPFRFLSVGSLFMSRIRFSISTSRLPN 416 E + P + P+ PLAS + G S + P +S S F+S FS++ R PN Sbjct: 889 ELIFSNPPDLYPALLGPLAS-LPGRSLFKSLLEKPSELMSHSSSFLSLTGFSVNQERYPN 947
>TRUB_GLOVI (Q7MBB8) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 292 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = +3 Query: 222 CSAQMETLLGMPMAVSPSAFSPLASDVLGYSSM*GIFTGPFRFLSVGSLFMSRIRFSIST 401 C A++ +LG P A+ VL + G T RFLS G ++ + +RF +ST Sbjct: 18 CIARLRRVLGERRIGHGGTLDPAATGVLPVAV--GRATRLLRFLSEGKVYRATVRFGLST 75
>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) Length = 487 Score = 29.6 bits (65), Expect = 3.1 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 308 G + + RP S Q SP+ +P + G Sbjct: 283 GLVRAQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>SPI1_SOLTU (P58514) Serine protease inhibitor 1 precursor (PSPI-21)| (PSPI-21-6.3) [Contains: Serine protease inhibitor 1 chain A; Serine protease inhibitor 1 chain B] Length = 221 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%) Frame = +3 Query: 267 SPSAFSPLASDVLGYSSM*GIFTGPFRFLSVGSLF--------MSRIRFSISTSRL 410 SP++ +P A+ V Y+S G P RF+ S F + I+F+ISTS+L Sbjct: 69 SPNSDAPCANGVFRYNSDVGPSGTPVRFIGSSSHFGQGIFENELLNIQFAISTSKL 124
>SPI2_SOLTU (P58515) Serine protease inhibitor 2 (PSPI-21) (PSPI-21-5.2)| [Contains: Serine protease inhibitor 2 chain A; Serine protease inhibitor 2 chain B] Length = 186 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%) Frame = +3 Query: 267 SPSAFSPLASDVLGYSSM*GIFTGPFRFLSVGSLF--------MSRIRFSISTSRL 410 SP++ +P A+ + Y+S G P RF+ S F + I+F+ISTS+L Sbjct: 41 SPNSDAPCANGIFRYNSDVGPSGTPVRFIGSSSHFGQGIFENELLNIQFAISTSKL 96
>ABDA_TRICA (Q07961) Homeobox protein abdominal-A homolog| Length = 343 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -1 Query: 425 VQEVRQPAGGDREADPRHEQGPDAQEPERAREDALHAAVPQH 300 V+E+ + A +RE RH+Q QE ++ E H+++ QH Sbjct: 278 VKEINEQARREREEQERHKQ--QQQEKQQKIEQQTHSSIHQH 317
>SPI7_SOLTU (P30941) Serine protease inhibitor 7 precursor (PIG) (PIGEN1)| (Allergen Sola t 4) (STPIB) (STPIA) (pKEN14-28) (pF4) Length = 221 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%) Frame = +3 Query: 267 SPSAFSPLASDVLGYSSM*GIFTGPFRFLSVGSLF--------MSRIRFSISTSRL 410 SP++ +P A+ + Y+S G P RF+ S F + I+F+ISTS+L Sbjct: 69 SPNSDAPCANGIFRYNSDVGPSGTPVRFIGSSSHFGQGIFENELLNIQFAISTSKL 124
>SPI6_SOLTU (Q41433) Probable serine protease inhibitor 6 precursor (AM66)| Length = 221 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%) Frame = +3 Query: 267 SPSAFSPLASDVLGYSSM*GIFTGPFRFLSVGSLF--------MSRIRFSISTSRL 410 SP++ +P A+ + Y+S G P RF+ S F + I+F+ISTS+L Sbjct: 69 SPNSDAPCANGIFRYNSDVGPSGTPVRFIGSSSHFGQGIFENELLNIQFAISTSKL 124
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 29.3 bits (64), Expect = 4.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 38 LSSPYQHHLRHNHHFPSS 91 +SSP+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>YF1M_CAEEL (Q21874) Hypothetical protein R09E10.5 precursor| Length = 1459 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 255 PMAVSPSAFSPLASDVLGYSSM*GIFT 335 PM + P FSP+ SDV G M G+ T Sbjct: 1431 PMTLEPRGFSPVPSDVRGSQGMLGLNT 1457
>C18AA_PAEPP (Q45358) Parasporal crystal protein cry18Aa (Parasporal| delta-endotoxin CryXVIIIA(a)) (Crystaline parasporal protoxin) (79 kDa crystal protein) Length = 706 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 131 PMKSNTIHLARHEPIHDQRTDDYRKKETKTM 223 P+ +NTI PI+ RTD +RKK T+ + Sbjct: 74 PIDNNTICSTDFTPINVMRTDPFRKKSTQEL 104
>DDLA_SHIFL (P0A6K0) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOLI (P0A6J8) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOL6 (Q8FKE3) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECO57 (P0A6J9) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>AHC1_YEAST (Q12433) Protein AHC1 (ADA HAT complex component 1)| Length = 566 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%) Frame = +2 Query: 38 LSSPYQHHLRHNHHFPSS--------TNPWQLITATTQKPMKSN 145 + SP Q L+H HH P+S TN +Q+ T + + +++N Sbjct: 1 MMSPAQDKLQHQHHNPNSSSSSSSKMTNVYQVTTPKSPQDLENN 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,845,192 Number of Sequences: 219361 Number of extensions: 1076845 Number of successful extensions: 3740 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 3439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3674 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
