Clone Name | rbastl45a06 |
---|---|
Clone Library Name | barley_pub |
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 827 bits (417), Expect = 0.0 Identities = 423/425 (99%) Strand = Plus / Minus Query: 1 gaaaagaatgcgcacacgagtgcttattcatgcctcattgtcctcaccctatcaacatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2993 gaaaagaatgcgcacacgagtgcttattcatgcctcattgtcctcaccctatcaacatca 2934 Query: 61 tctacgacacaatcatcattttccatcatccactaatccctggcaactaattaccgcaac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2933 tctacgacacaatcatcattttccatcatccactaatccctggcaactaattaccgcaac 2874 Query: 121 cacccagaagccaatgaaaagtaacacaatacaccttgcgagacacgaaccgatccatga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2873 cacccagaagccaatgaaaagtaacacaatacaccttgcgagacacgaaccgatccatga 2814 Query: 181 ccagcggacggacgactaccgaaagaaggaaacaaagaccatgctcagctcaaatggaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2813 ccagcggacggacgactaccgaaagaaggaaacaaagaccatgctcagctcagatggaga 2754 Query: 241 cgctgttggggatgcccatggcggtgagccccagcgccttctccccgttggcgtccgacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2753 cgctgttggggatgcccatggcggtgagccccagcgccttctccccgttggcgtccgacg 2694 Query: 301 tgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgtcg 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 2693 tgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgccg 2634 Query: 361 ggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggctgccgaacctct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2633 ggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggctgccgaacctct 2574 Query: 421 tgaac 425 ||||| Sbjct: 2573 tgaac 2569
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2447 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2388 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2387 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2328 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2327 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2268 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 2267 tgccgaacctcttgaac 2251
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2926 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2867 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2866 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2807 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2806 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2747 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 2746 tgccgaacctcttgaac 2730
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 65817 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 65758 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 65757 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 65698 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 65697 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 65638 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 65637 tgccgaacctcttgaac 65621 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 237 gagacgctgttggggatgcccatggcggtga 267 |||| |||||||||||||||| ||||||||| Sbjct: 47230 gagatgctgttggggatgcccttggcggtga 47200 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 6032 tctcaatctccaccagctgcctgctgaacctcttgaa 5996 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 6076 ccggttcttgagcagggggtccttgttcatgt 6045
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 27821687 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 27821628 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 27821627 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 27821568 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 27821567 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 27821508 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 27821507 tgccgaacctcttgaac 27821491 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcgg 264 ||||||| |||||||||||||||| |||||| Sbjct: 30026445 atggagatgctgttggggatgcccctggcgg 30026415 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 237 gagacgctgttggggatgcccatggcggtga 267 |||| |||||||||||||||| ||||||||| Sbjct: 27803100 gagatgctgttggggatgcccttggcggtga 27803070 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 27761903 tctcaatctccaccagctgcctgctgaacctcttgaa 27761867 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 229 ctcaaatggagacgctgttggggatgccc 257 ||||||||| || |||||||||||||||| Sbjct: 14300017 ctcaaatggtgatgctgttggggatgccc 14300045 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 27761947 ccggttcttgagcagggggtccttgttcatgt 27761916
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 27913011 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 27912952 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 27912951 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 27912892 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 27912891 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 27912832 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 27912831 tgccgaacctcttgaac 27912815 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcgg 264 ||||||| |||||||||||||||| |||||| Sbjct: 30117867 atggagatgctgttggggatgcccctggcgg 30117837 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 237 gagacgctgttggggatgcccatggcggtga 267 |||| |||||||||||||||| ||||||||| Sbjct: 27894424 gagatgctgttggggatgcccttggcggtga 27894394 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 27853226 tctcaatctccaccagctgcctgctgaacctcttgaa 27853190 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 229 ctcaaatggagacgctgttggggatgccc 257 ||||||||| || |||||||||||||||| Sbjct: 14294992 ctcaaatggtgatgctgttggggatgccc 14295020 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 27853270 ccggttcttgagcagggggtccttgttcatgt 27853239
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 1333 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 1274 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 1273 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 1214 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 1213 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 1154 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 1153 tgccgaacctcttgaac 1137
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2598 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2539 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2538 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2479 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2478 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2419 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 2418 tgccgaacctcttgaac 2402
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2928 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2869 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2868 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2809 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2808 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2749 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 2748 tgccgaacctcttgaac 2732
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 200 bits (101), Expect = 3e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 1498 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 1439 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 1438 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 1379 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 1378 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 1319 Query: 409 tgccgaacctcttgaac 425 ||||||||||||||||| Sbjct: 1318 tgccgaacctcttgaac 1302
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 184 bits (93), Expect = 2e-43 Identities = 171/197 (86%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 288 |||| ||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2920 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2861 Query: 289 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 348 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2860 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2801 Query: 349 tcttgagcgtcgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 408 ||||||||| || || ||||| ||| |||||| |||||||| ||||||||||||| Sbjct: 2800 tcttgagcgccgagttgccgttcacgtccttgatccggttctcgatatccaccagccggc 2741 Query: 409 tgccgaacctcttgaac 425 ||||||||||| ||||| Sbjct: 2740 tgccgaacctcctgaac 2724
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 143 bits (72), Expect = 5e-31 Identities = 164/192 (85%), Gaps = 2/192 (1%) Strand = Plus / Minus Query: 228 gctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccg 287 ||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||| ||| Sbjct: 369 gctcatatggagatgctgttgggaatgcccatggcagtgagcccctcgcccttctcgccg 310 Query: 288 ttggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccgg 347 || | |||||||||||||| |||||||||||||| ||||||| ||| ||||| |||||| Sbjct: 309 gtgacatccgacgtgttgggatacagcagcatgtacggcatctccaccggccccttccgg 250 Query: 348 ttcttgagcgtcgggtccttgttcat-gtcgaggatccgcttctcgatctccaccagccg 406 ||||| | ||||||| | |||||| ||| ||||||||||||||||||||||||||| Sbjct: 249 ttcttcaacgtcgggctgtcgttcatcgtc-ctgatccgcttctcgatctccaccagccg 191 Query: 407 gctgccgaacct 418 ||| |||||||| Sbjct: 190 gcttccgaacct 179
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 113 bits (57), Expect = 5e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 228 gctcaaatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccg 287 ||||| ||||||| ||||||||| ||||||||||| || |||||| |||||||| ||| Sbjct: 2902 gctcatatggagatgctgttgggaatgcccatggcagtaagcccctcggccttctcgccg 2843 Query: 288 ttggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccgg 347 | ||||||||||||||||||||||||||||||| ||||| | ||| ||||| |||||| Sbjct: 2842 gtaacgtccgacgtgttggggtacagcagcatgtacggcatttccacaggccccttccgg 2783 Query: 348 ttctt 352 ||||| Sbjct: 2782 ttctt 2778 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Minus Query: 380 gatccgcttctcgatctccaccagccggctgccgaacctcttgaac 425 |||||| ||||| |||| |||||||||||| ||||| || |||||| Sbjct: 2750 gatccgattctcaatctgcaccagccggctcccgaatcttttgaac 2705
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 226 cagctcaaatggagacgctgttggggatgcccat 259 ||||||||||||||| |||||||||||||||||| Sbjct: 2920 cagctcaaatggagatgctgttggggatgcccat 2887
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 227 agctcaaatggagacgctgttggggatgcccat 259 |||||||||||||| |||||||||||||||||| Sbjct: 22970463 agctcaaatggagatgctgttggggatgcccat 22970431
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 227 agctcaaatggagacgctgttggggatgcccat 259 |||||||||||||| |||||||||||||||||| Sbjct: 22898654 agctcaaatggagatgctgttggggatgcccat 22898622
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 227 agctcaaatggagacgctgttggggatgcccat 259 |||||||||||||| |||||||||||||||||| Sbjct: 79740 agctcaaatggagatgctgttggggatgcccat 79708
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtgagcccc 272 |||| ||||||| |||||||||||||||| |||| ||||||||| Sbjct: 907 ctcagatggagatgctgttggggatgcccctggccgtgagcccc 864 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgtc 359 ||||||||||| |||||||||||||| | ||| | |||||| | |||||||||||| | Sbjct: 839 gtgttggggtagagcagcatgtaggggaacttggccggcccggtgcggttcttgagccgc 780 Query: 360 gggtccttgttcatg 374 |||||| ||||||| Sbjct: 779 gggtccccgttcatg 765
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 228 gctcaaatggagacgctgttggggatgcccatggcggtgagccc 271 ||||| ||||||| |||||||||||||||| | ||||||||||| Sbjct: 755 gctcagatggagatgctgttggggatgcccttagcggtgagccc 712
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 228 gctcaaatggagacgctgttggggatgcccatggcggtgagccc 271 ||||| ||||||| |||||||||||||||| |||| |||||||| Sbjct: 4664 gctcagatggagatgctgttggggatgcccttggcagtgagccc 4621
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 228 gctcaaatggagacgctgttggggatgcccatggcggtgagccc 271 ||||| ||||||| |||||||||||||||| |||| |||||||| Sbjct: 2066 gctcagatggagatgctgttggggatgcccttggcagtgagccc 2023 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtaggg 325 ||||||||||| |||||||||||||| Sbjct: 1997 gtgttggggtagagcagcatgtaggg 1972
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgtc 359 ||||||||||| |||||||||||||| | ||| | || ||||| |||||||||||| | Sbjct: 1019 gtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggttcttgagctcc 960 Query: 360 gggtccttgttcatg 374 ||||| | ||||||| Sbjct: 959 gggtcatggttcatg 945 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcggtgagccc 271 ||||||| |||||||||||||||| ||||||| ||||| Sbjct: 1082 atggagatgctgttggggatgcccttggcggtaagccc 1045
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 222 tgctcagctcaaatggagacgctgttggggatgcccatggcggtgagcccc 272 ||||||| ||| ||||| | |||||| ||||||||| |||||||||||||| Sbjct: 2666 tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 2616
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgtc 359 ||||||||||| |||||||||||||| | ||| | || ||||| |||||||||||| | Sbjct: 2590 gtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggttcttgagctcc 2531 Query: 360 gggtccttgttcatg 374 ||||| | ||||||| Sbjct: 2530 gggtcatggttcatg 2516 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcggtgagccc 271 ||||||| |||||||||||||||| ||||||| ||||| Sbjct: 2653 atggagatgctgttggggatgcccttggcggtaagccc 2616
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcggtgagccc 271 ||||||| |||||||||||||||| |||| |||||||| Sbjct: 2591 atggagatgctgttggggatgcccttggcagtgagccc 2554
>gb|AY098520.1| Ananas comosus lipoxygenase I mRNA, partial cds Length = 1143 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 319 tgtagggcatcttcacgggcccgttccggttctt 352 |||||||||||||||| || |||||||||||||| Sbjct: 930 tgtagggcatcttcaccgggccgttccggttctt 897
>gb|AY098518.1| Ananas comosus lipoxygenase III mRNA, partial cds Length = 524 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 306 gggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||| ||||| |||| ||||||||||| |||||||||| ||||||||| Sbjct: 451 gggtaaagcagtgtgtacggcatcttcaccggcccgttcctgttcttgag 402
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 729 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 674
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 242 gctgttggggatgcccatggcggtgag 268 |||||||||||||||| |||||||||| Sbjct: 3 gctgttggggatgcccttggcggtgag 29
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcgg 264 ||||||| |||||||||||||||| |||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcgg 2579
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 237 gagacgctgttggggatgcccatggcggtga 267 |||| |||||||||||||||| ||||||||| Sbjct: 2594 gagatgctgttggggatgcccttggcggtga 2564
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcgg 264 ||||||| |||||||||||||||| |||||| Sbjct: 2691 atggagatgctgttggggatgcccctggcgg 2661
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 234 atggagacgctgttggggatgcccatggcgg 264 ||||||| |||||||||||||||| |||||| Sbjct: 81306 atggagatgctgttggggatgcccctggcgg 81336
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 230 tcaaatggagacgctgttggggatgcc 256 ||||||||||| ||||||||||||||| Sbjct: 2774 tcaaatggagatgctgttggggatgcc 2748
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 237 gagacgctgttggggatgcccatggcggtga 267 |||| |||||||||||||||| ||||||||| Sbjct: 10793 gagatgctgttggggatgcccttggcggtga 10823 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 51991 tctcaatctccaccagctgcctgctgaacctcttgaa 52027 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 51947 ccggttcttgagcagggggtccttgttcatgt 51978
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 46.1 bits (23), Expect = 0.092 Identities = 35/39 (89%) Strand = Plus / Minus Query: 229 ctcaaatggagacgctgttggggatgcccatggcggtga 267 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 2623 ctcaaatggagatgctgtttggaatgcccttggcggtga 2585
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcgg 264 ||||||| |||||||||||||||| |||||| Sbjct: 2724 atggagatgctgttggggatgcccctggcgg 2694
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3198 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 2965 gctgttggggatgcccatgccggtga 2940
>ref|XM_483276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2775 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 2763 gctgttggggatgcccatgccggtga 2738
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 25242563 gctgttggggatgcccatgccggtga 25242538 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 25209466 gctgttggggatgcccatgccggtga 25209491
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 107686 gctgttggggatgcccatgccggtga 107661 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 74589 gctgttggggatgcccatgccggtga 74614
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 17748 gctgttggggatgcccatgccggtga 17723
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full insert sequence Length = 3196 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 2963 gctgttggggatgcccatgccggtga 2938
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds Length = 2232 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 2040 gctgttggggatgcccatgccggtga 2015
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 2448 gctgttggggatgcccatgccggtga 2423
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 gctgttggggatgcccatggcggtga 267 ||||||||||||||||||| |||||| Sbjct: 2878 gctgttggggatgcccatgccggtga 2853
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 234 atggagacgctgttggggatgcccatggcggtga 267 ||||||| |||||||||||||||| |||| |||| Sbjct: 1552 atggagatgctgttggggatgcccttggctgtga 1519 Score = 40.1 bits (20), Expect = 5.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 300 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 355 ||||||||||| || ||||||||||| | || | ||||| |||||||||||||| Sbjct: 1486 gtgttggggtagagtagcatgtaggggaattttgctggcccattccggttcttgag 1431
>gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182995 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ccacccagaagccaatgaaaa 140 ||||||||||||||||||||| Sbjct: 111481 ccacccagaagccaatgaaaa 111461
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 2437 tctcaatctccaccagctgcctgctgaacctcttgaa 2401 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 2481 ccggttcttgagcagggggtccttgttcatgt 2450
>gb|AC107868.9| Mus musculus chromosome 17, clone RP23-405A17, complete sequence Length = 193624 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 aaccacccagaagccaatgaaaagt 142 |||||||||| |||||||||||||| Sbjct: 6038 aaccacccagcagccaatgaaaagt 6014
>ref|XM_591335.2| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 3 (LOC513625), mRNA Length = 5895 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 2820 gatctccaccagccggctgcc 2800
>ref|XM_879429.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 8 (LOC534839), mRNA Length = 7417 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>ref|XM_879405.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 7 (LOC534839), mRNA Length = 7543 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 3227 gatctccaccagccggctgcc 3207
>ref|XM_879377.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 6 (LOC534839), mRNA Length = 7390 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>ref|XM_879350.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 5 (LOC534839), mRNA Length = 7507 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 3128 gatctccaccagccggctgcc 3108
>ref|XM_879253.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 2 (LOC534839), mRNA Length = 4851 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>ref|XM_614747.2| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 1 (LOC534839), mRNA Length = 7480 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 gatctccaccagccggctgcc 412 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>gb|AC124174.4| Mus musculus BAC clone RP23-181O22 from chromosome 3, complete sequence Length = 197553 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ccacccagaagccaatgaaaa 140 ||||||||||||||||||||| Sbjct: 163213 ccacccagaagccaatgaaaa 163193
>gb|AF514331.1| Scyllarus arctus 28S ribosomal RNA gene, partial sequence Length = 475 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 ccactaatccctggcaactaattac 114 ||||||||||||||||||| ||||| Sbjct: 431 ccactaatccctggcaactgattac 455
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 229 ctcaaatggagacgctgttggggatgccc 257 ||||||||| || |||||||||||||||| Sbjct: 49246 ctcaaatggtgatgctgttggggatgccc 49274
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 229 ctcaaatggagacgctgttggggatgccc 257 ||||||||| || |||||||||||||||| Sbjct: 111405 ctcaaatggtgatgctgttggggatgccc 111433
>gb|AC154544.2| Mus musculus BAC clone RP23-228G19 from chromosome 17, complete sequence Length = 183626 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 aaccacccagaagccaatgaaaagt 142 |||||||||| |||||||||||||| Sbjct: 147032 aaccacccagcagccaatgaaaagt 147008
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 2503 tctcaatctccaccagctgcctgctgaacctcttgaa 2467 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 2547 ccggttcttgagcagggggtccttgttcatgt 2516
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 388 tctcgatctccaccagccggctgccgaacctcttgaa 424 |||| |||||||||||| | |||| |||||||||||| Sbjct: 2511 tctcaatctccaccagctgcctgctgaacctcttgaa 2475 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 344 ccggttcttgagcgtcgggtccttgttcatgt 375 ||||||||||||| |||||||||||||||| Sbjct: 2555 ccggttcttgagcagggggtccttgttcatgt 2524
>emb|AL445074.4|CNS07ECX Human chromosome 14 DNA sequence BAC R-313C4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 144538 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 81 ttccatcatccactaatccctggcaacta 109 ||||||| |||||||||||||||||||| Sbjct: 2646 ttccatctcccactaatccctggcaacta 2674
>gb|AC138358.12| Mus musculus chromosome 1, clone RP24-147G10, complete sequence Length = 180227 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 65514 cttctcgatctccaccagcc 65495
>gb|AC159317.3| Mus musculus BAC clone RP23-76I20 from chromosome 16, complete sequence Length = 224160 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgctcagctcaaatggagac 241 |||||||||||||||||||| Sbjct: 181210 tgctcagctcaaatggagac 181229
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tccatgaccagcggacggac 193 |||||||||||||||||||| Sbjct: 181139 tccatgaccagcggacggac 181120
>gb|BC059034.1| Mus musculus dual specificity phosphatase 27 (putative), mRNA (cDNA clone IMAGE:6811947), partial cds Length = 3391 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 929 cttctcgatctccaccagcc 910
>gb|AY581127.1| Azorhizobium caulinodans strain ORS571 hydrogenase gene cluster, complete sequence Length = 21000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ctcgatctccaccagccggc 408 |||||||||||||||||||| Sbjct: 15277 ctcgatctccaccagccggc 15258
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgggtccttgttcatgtcga 378 |||||||||||||||||||| Sbjct: 2460097 cgggtccttgttcatgtcga 2460116
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgggtccttgttcatgtcga 378 |||||||||||||||||||| Sbjct: 3093384 cgggtccttgttcatgtcga 3093403
>ref|XM_657908.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5396.2), mRNA Length = 555 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggcgtccgacgtgttggggt 309 |||||||||||||||||||| Sbjct: 102 ggcgtccgacgtgttggggt 83
>ref|XM_979911.1| PREDICTED: Mus musculus dual specificity phosphatase 27 (putative) (Dusp27), mRNA Length = 3357 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 912 cttctcgatctccaccagcc 893
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 atcaacatcatctacgacac 70 |||||||||||||||||||| Sbjct: 1401984 atcaacatcatctacgacac 1402003
>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a CpG island, complete sequence Length = 157379 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 atccctggcaactaattacc 115 |||||||||||||||||||| Sbjct: 53547 atccctggcaactaattacc 53528
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgggtccttgttcatgtcga 378 |||||||||||||||||||| Sbjct: 640078 cgggtccttgttcatgtcga 640097
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgggtccttgttcatgtcga 378 |||||||||||||||||||| Sbjct: 2823462 cgggtccttgttcatgtcga 2823481
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 atcaacatcatctacgacac 70 |||||||||||||||||||| Sbjct: 1405674 atcaacatcatctacgacac 1405693
>dbj|AK142263.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330024O22 product:hypothetical Dual specificity protein phosphatase containing protein, full insert sequence Length = 4022 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 1581 cttctcgatctccaccagcc 1562
>gb|AC154359.2| Mus musculus BAC clone RP23-178L8 from chromosome 16, complete sequence Length = 212696 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgctcagctcaaatggagac 241 |||||||||||||||||||| Sbjct: 11944 tgctcagctcaaatggagac 11963
>dbj|AK048603.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130085G02 product:hypothetical Serine-rich region/Tyrosine specific protein phosphatase and dual specificity protein phosphatase family/Dual specificity protein phosphatase/Glutamic acid-rich region containing protein, full insert sequence Length = 3473 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 1603 cttctcgatctccaccagcc 1584
>ref|XM_573493.1| PREDICTED: Rattus norvegicus similar to C130085G02Rik protein (LOC498267), mRNA Length = 3159 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 1182 cttctcgatctccaccagcc 1163
>ref|NM_001033344.1| Mus musculus dual specificity phosphatase 27 (putative) (Dusp27), mRNA Length = 4022 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cttctcgatctccaccagcc 405 |||||||||||||||||||| Sbjct: 1581 cttctcgatctccaccagcc 1562
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgggtccttgttcatgtcga 378 |||||||||||||||||||| Sbjct: 2368841 cgggtccttgttcatgtcga 2368822
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 atcaacatcatctacgacac 70 |||||||||||||||||||| Sbjct: 2173734 atcaacatcatctacgacac 2173715
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 atcaacatcatctacgacac 70 |||||||||||||||||||| Sbjct: 1913432 atcaacatcatctacgacac 1913451
>dbj|AP004943.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT38E13, TM0115, complete sequence Length = 95582 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 319 tgtagggcatcttcacgggcccgttccggttc 350 |||||||||||||||| ||||| | ||||||| Sbjct: 73247 tgtagggcatcttcaccggcccataccggttc 73216
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 atcaacatcatctacgacac 70 |||||||||||||||||||| Sbjct: 1705633 atcaacatcatctacgacac 1705614
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 atcaacatcatctacgacac 70 |||||||||||||||||||| Sbjct: 1891170 atcaacatcatctacgacac 1891151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,119,826 Number of Sequences: 3902068 Number of extensions: 3119826 Number of successful extensions: 65588 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65020 Number of HSP's gapped (non-prelim): 547 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)