ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197355.1| Oryza sativa (japonica cultivar-group) putative... 50 0.005
2gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 50 0.005
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
4dbj|AK059055.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
6gb|AY108410.1| Zea mays PCO086236 mRNA sequence 48 0.019
7gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.30
8gb|AC113448.14| Mus musculus chromosome 15, clone RP23-1N23, com... 44 0.30
9gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.30
10gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome... 44 0.30
11gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosom... 44 0.30
12gb|AC160461.3| Mus musculus chromosome 15, clone RP23-174B9, com... 44 0.30
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
14emb|AL669895.9| Mouse DNA sequence from clone RP23-31N7 on chrom... 44 0.30
15gb|AC123650.7| Mus musculus chromosome 1, clone RP23-124N16, com... 42 1.2
16gb|AC119893.9| Mus musculus chromosome 1, clone RP24-225A6, comp... 42 1.2
17gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, compl... 42 1.2
18gb|AC154913.4| Ornithorhynchus anatinus BAC clone OABb-535A1 fro... 42 1.2
19gb|AC062004.5| Homo sapiens chromosome 8, clone RP11-325O20, com... 42 1.2
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21gb|AC112510.9| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cance... 42 1.2
22dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
23emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chr... 42 1.2
24gb|AC154595.2| Mus musculus BAC clone RP23-353D15 from 13, compl... 42 1.2
25gb|AC142258.4| Mus musculus BAC clone RP24-511I20 from 13, compl... 42 1.2
26gb|AC132425.3| Mus musculus BAC clone RP23-311O15 from 7, comple... 42 1.2
27emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chro... 42 1.2
28ref|XM_467892.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
29gb|AC156396.8| Mus musculus 6 BAC RP24-303J2 (Roswell Park Cance... 40 4.7
30gb|AY333965.1| Cat.B detection vector, complete sequence 40 4.7
31gb|AC132248.3| Mus musculus BAC clone RP24-425H24 from chromosom... 40 4.7
32gb|AC139943.3| Mus musculus BAC clone RP23-472M3 from chromosome... 40 4.7
33gb|AC167723.3| Mus musculus BAC RP23-297A10 (Roswell Park Cance... 40 4.7
34gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome... 40 4.7
35gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosom... 40 4.7
36emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 4.7
37emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K2... 40 4.7
38gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, co... 40 4.7
39emb|X57845.1|HVGNIRE H.vulgare gene for nitrate reductase 40 4.7
40emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 40 4.7
41emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on ch... 40 4.7
42emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4,... 40 4.7
43gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell ... 40 4.7
44gb|AC103594.3| Homo sapiens chromosome 1 clone RP11-289A2, compl... 40 4.7
45gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell ... 40 4.7
46gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome... 40 4.7
47gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosom... 40 4.7
48gb|AY255629.1| Mus musculus Ret receptor protein (Ret) gene, pro... 40 4.7
49gb|AC048387.16| Homo sapiens chromosome 8, clone RP11-465K16, co... 40 4.7
50gb|AC026463.5| Homo sapiens chromosome 5 clone RP11-317I23, comp... 40 4.7
51dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
52dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
53gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone... 40 4.7
54dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
55gb|AC010386.5|AC010386 Homo sapiens chromosome 5 clone CTD-2074B... 40 4.7
56dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
57dbj|AK111266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
58gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q... 40 4.7
59emb|AL513502.3|HS123J20 Homo sapiens chromosome 9 BAC RP11-123j2... 40 4.7
60emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on ch... 40 4.7
61gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 ... 40 4.7
62emb|CT573093.3| CH250-1K10, complete sequence 40 4.7
63emb|AL954325.8| Mouse DNA sequence from clone RP23-416H10 on chr... 40 4.7
64emb|AL450004.4|HS520K3 Homo sapiens chromosome 9 BAC RP11-520K3,... 40 4.7
65dbj|AB216157.1| Equus caballus DNA, microsatellite TKY2214 40 4.7
66emb|AL626774.23| Mouse DNA sequence from clone RP23-198O15 on ch... 40 4.7 
>ref|NM_197355.1| Oryza sativa (japonica cultivar-group) putative transcription factor
            (OSJNBa0076F20.5), mRNA
          Length = 3478

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 59   cactgtaattaacacagcaacgaatcaagaaacggat 95
            ||||||||||||||||  |||||||||||||| ||||
Sbjct: 2855 cactgtaattaacacaagaacgaatcaagaaatggat 2819
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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 59    cactgtaattaacacagcaacgaatcaagaaacggat 95
             ||||||||||||||||  |||||||||||||| ||||
Sbjct: 38332 cactgtaattaacacaagaacgaatcaagaaatggat 38368
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 59       cactgtaattaacacagcaacgaatcaagaaacggat 95
                ||||||||||||||||  |||||||||||||| ||||
Sbjct: 19410466 cactgtaattaacacaagaacgaatcaagaaatggat 19410502
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>dbj|AK059055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F02, full
            insert sequence
          Length = 1418

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 59   cactgtaattaacacagcaacgaatcaagaaacggat 95
            ||||||||||||||||  |||||||||||||| ||||
Sbjct: 1123 cactgtaattaacacaagaacgaatcaagaaatggat 1087
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 59       cactgtaattaacacagcaacgaatcaagaaacggat 95
                ||||||||||||||||  |||||||||||||| ||||
Sbjct: 19421742 cactgtaattaacacaagaacgaatcaagaaatggat 19421778
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>gb|AY108410.1| Zea mays PCO086236 mRNA sequence
          Length = 496

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 59  cactgtaattaacacagcaacgaatcaa 86
           |||| |||||||||||||||||||||||
Sbjct: 237 cactataattaacacagcaacgaatcaa 210



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 1   cttattaatcaccacgacaaatcaataaataacc 34
           ||||||||| ||||  ||||||||||||||||||
Sbjct: 316 cttattaattaccagaacaaatcaataaataacc 283
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 163     tcgacgacgacgatgcgcgcgc 184
               ||||||||||||||||||||||
Sbjct: 2258751 tcgacgacgacgatgcgcgcgc 2258772
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>gb|AC113448.14| Mus musculus chromosome 15, clone RP23-1N23, complete sequence
          Length = 216103

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 184   catgcatatgcatgcatgcagg 205
             ||||||||||||||||||||||
Sbjct: 70674 catgcatatgcatgcatgcagg 70695
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>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0015G13, complete sequence
          Length = 143966

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 184   catgcatatgcatgcatgcagg 205
             ||||||||||||||||||||||
Sbjct: 68441 catgcatatgcatgcatgcagg 68420
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>gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome 9, complete sequence
          Length = 166474

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   gcgcgcgcatgcatatgcatgc 198
             ||||||||||||||||||||||
Sbjct: 51036 gcgcgcgcatgcatatgcatgc 51015
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>gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosome 9, complete sequence
          Length = 217511

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 177    gcgcgcgcatgcatatgcatgc 198
              ||||||||||||||||||||||
Sbjct: 208131 gcgcgcgcatgcatatgcatgc 208110
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>gb|AC160461.3| Mus musculus chromosome 15, clone RP23-174B9, complete sequence
          Length = 208877

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 184    catgcatatgcatgcatgcagg 205
              ||||||||||||||||||||||
Sbjct: 103995 catgcatatgcatgcatgcagg 104016
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 184     catgcatatgcatgcatgcagg 205
               ||||||||||||||||||||||
Sbjct: 6366702 catgcatatgcatgcatgcagg 6366681
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>emb|AL669895.9| Mouse DNA sequence from clone RP23-31N7 on chromosome X, complete
              sequence
          Length = 197638

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 175    atgcgcgcgcatgcatatgcatgcat 200
              |||| |||||||||||||||||||||
Sbjct: 151591 atgcacgcgcatgcatatgcatgcat 151566
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>gb|AC123650.7| Mus musculus chromosome 1, clone RP23-124N16, complete sequence
          Length = 220806

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 186    tgcatatgcatgcatgcaggc 206
              |||||||||||||||||||||
Sbjct: 204818 tgcatatgcatgcatgcaggc 204838
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>gb|AC119893.9| Mus musculus chromosome 1, clone RP24-225A6, complete sequence
          Length = 179453

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 186    tgcatatgcatgcatgcaggc 206
              |||||||||||||||||||||
Sbjct: 137555 tgcatatgcatgcatgcaggc 137535
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>gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, complete sequence
          Length = 195459

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   gcatgcatatgcatgcatgca 203
             |||||||||||||||||||||
Sbjct: 93261 gcatgcatatgcatgcatgca 93281
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>gb|AC154913.4| Ornithorhynchus anatinus BAC clone OABb-535A1 from chromosome unknown,
             complete sequence
          Length = 199332

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 124   gggacatggagagggagggtgtgta 148
             ||||||||||| |||||||||||||
Sbjct: 19310 gggacatggagtgggagggtgtgta 19334
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>gb|AC062004.5| Homo sapiens chromosome 8, clone RP11-325O20, complete sequence
          Length = 205646

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 189  atatgcatgcatgcaggcgaatgat 213
            ||||||||||||||| |||||||||
Sbjct: 2328 atatgcatgcatgcatgcgaatgat 2304
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 183      gcatgcatatgcatgcatgca 203
                |||||||||||||||||||||
Sbjct: 22939207 gcatgcatatgcatgcatgca 22939227



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      atgcatatgcatgcatgcag 204
                ||||||||||||||||||||
Sbjct: 31951157 atgcatatgcatgcatgcag 31951138
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>gb|AC112510.9| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 192749

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    caataaataaccagaccacca 43
             |||||||||||||||||||||
Sbjct: 53053 caataaataaccagaccacca 53073
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   gcatgcatatgcatgcatgca 203
             |||||||||||||||||||||
Sbjct: 59009 gcatgcatatgcatgcatgca 59029
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>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete
             sequence
          Length = 188464

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   tgcatatgcatgcatgcaggc 206
             |||||||||||||||||||||
Sbjct: 54945 tgcatatgcatgcatgcaggc 54965
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>gb|AC154595.2| Mus musculus BAC clone RP23-353D15 from 13, complete sequence
          Length = 180529

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    gcatgcatatgcatgcatgca 203
              |||||||||||||||||||||
Sbjct: 169472 gcatgcatatgcatgcatgca 169492
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>gb|AC142258.4| Mus musculus BAC clone RP24-511I20 from 13, complete sequence
          Length = 159880

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   gagagctcttgagttttaggt 306
             |||||||||||||||||||||
Sbjct: 80689 gagagctcttgagttttaggt 80669
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>gb|AC132425.3| Mus musculus BAC clone RP23-311O15 from 7, complete sequence
          Length = 160552

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   tgcatatgcatgcatgcaggc 206
             |||||||||||||||||||||
Sbjct: 64560 tgcatatgcatgcatgcaggc 64580
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>emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chromosome 13, complete
             sequence
          Length = 218811

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   gcatgcatatgcatgcatgca 203
             |||||||||||||||||||||
Sbjct: 30447 gcatgcatatgcatgcatgca 30467
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>ref|XM_467892.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1032

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 atgcatatgcatgcatgcag 204
           ||||||||||||||||||||
Sbjct: 653 atgcatatgcatgcatgcag 672
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>gb|AC156396.8| Mus musculus 6 BAC RP24-303J2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 145666

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 68038 catgcatatgcatgcatgca 68057
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>gb|AY333965.1| Cat.B detection vector, complete sequence
          Length = 765

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 gcatgcatatgcatgcatgc 202
           ||||||||||||||||||||
Sbjct: 132 gcatgcatatgcatgcatgc 151
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>gb|AC132248.3| Mus musculus BAC clone RP24-425H24 from chromosome 7, complete sequence
          Length = 195294

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 122765 catgcatatgcatgcatgca 122746
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>gb|AC139943.3| Mus musculus BAC clone RP23-472M3 from chromosome 7, complete sequence
          Length = 183421

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 176    tgcgcgcgcatgcatatgcatgca 199
              |||||||| |||||||||||||||
Sbjct: 108107 tgcgcgcgtatgcatatgcatgca 108084
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>gb|AC167723.3| Mus musculus  BAC RP23-297A10 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 196622

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 17006 catgcatatgcatgcatgca 17025
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>gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome 8, complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 94595 catgcatatgcatgcatgca 94576
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>gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosome 1, complete sequence
          Length = 177161

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    atgcatatgcatgcatgcag 204
              ||||||||||||||||||||
Sbjct: 125373 atgcatatgcatgcatgcag 125392
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>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ggggtgctggagcttggtgg 280
             ||||||||||||||||||||
Sbjct: 32311 ggggtgctggagcttggtgg 32330
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>emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K24 on chromosome 1p22.3-31.2,
            complete sequence
          Length = 129467

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 124  gggacatggagagggagggtgtgt 147
            |||||||||||||||||| |||||
Sbjct: 9844 gggacatggagagggaggttgtgt 9867
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>gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, complete sequence
          Length = 150125

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    actgtaattaacacagcaac 79
             ||||||||||||||||||||
Sbjct: 73299 actgtaattaacacagcaac 73280
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>emb|X57845.1|HVGNIRE H.vulgare gene for nitrate reductase
          Length = 7299

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 184  catgcatatgcatgcatgca 203
            ||||||||||||||||||||
Sbjct: 4391 catgcatatgcatgcatgca 4410
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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
              complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 142503 catgcatatgcatgcatgca 142522
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>emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on chromosome 11 Contains a
              novel gene, the 3'  end of the Mmd gene for monocyte to
              macrophage differentiation-associated and the 3' end of the
              Hlf gene for hepatic leukemia factor, complete sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 108485 catgcatatgcatgcatgca 108504
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>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 11923 catgcatatgcatgcatgca 11942
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>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 104085 catgcatatgcatgcatgca 104066
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>gb|AC103594.3| Homo sapiens chromosome 1 clone RP11-289A2, complete sequence
          Length = 51254

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   gggacatggagagggagggtgtgt 147
             |||||||||||||||||| |||||
Sbjct: 26143 gggacatggagagggaggttgtgt 26166
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>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187921

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 39279 catgcatatgcatgcatgca 39260
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>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence
          Length = 207840

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gcatatgcatgcatgcaggc 206
             ||||||||||||||||||||
Sbjct: 38549 gcatatgcatgcatgcaggc 38568
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>gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosome 12, complete sequence
          Length = 210571

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    gcatatgcatgcatgcaggc 206
              ||||||||||||||||||||
Sbjct: 195617 gcatatgcatgcatgcaggc 195636
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>gb|AY255629.1| Mus musculus Ret receptor protein (Ret) gene, promoter and partial
            cds
          Length = 4694

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  catgcatatgcatgcatgca 203
            ||||||||||||||||||||
Sbjct: 2626 catgcatatgcatgcatgca 2607
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>gb|AC048387.16| Homo sapiens chromosome 8, clone RP11-465K16, complete sequence
          Length = 193896

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 64683 catgcatatgcatgcatgca 64702
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>gb|AC026463.5| Homo sapiens chromosome 5 clone RP11-317I23, complete sequence
          Length = 169199

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    actgtaattaacacagcaac 79
             ||||||||||||||||||||
Sbjct: 54055 actgtaattaacacagcaac 54074
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 184      catgcatatgcatgcatgca 203
                ||||||||||||||||||||
Sbjct: 19360671 catgcatatgcatgcatgca 19360690
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 184      catgcatatgcatgcatgca 203
                ||||||||||||||||||||
Sbjct: 27626956 catgcatatgcatgcatgca 27626937
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>gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone rp23-220f20, complete
              sequence
          Length = 172680

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 108474 catgcatatgcatgcatgca 108493
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>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0011H15
          Length = 130146

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   catgcatatgcatgcatgca 203
             ||||||||||||||||||||
Sbjct: 24300 catgcatatgcatgcatgca 24281
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>gb|AC010386.5|AC010386 Homo sapiens chromosome 5 clone CTD-2074B5, complete sequence
          Length = 101324

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    actgtaattaacacagcaac 79
             ||||||||||||||||||||
Sbjct: 82155 actgtaattaacacagcaac 82174
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    atgcatatgcatgcatgcag 204
              ||||||||||||||||||||
Sbjct: 112158 atgcatatgcatgcatgcag 112139
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>dbj|AK111266.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F07, full
           insert sequence
          Length = 1032

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 atgcatatgcatgcatgcag 204
           ||||||||||||||||||||
Sbjct: 653 atgcatatgcatgcatgcag 672
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>gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q11.23-21.1, complete
            sequence
          Length = 170624

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 124  gggacatggagagggagggtgtgt 147
            |||||||||||||||||| |||||
Sbjct: 6302 gggacatggagagggaggttgtgt 6325
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>emb|AL513502.3|HS123J20 Homo sapiens chromosome 9 BAC RP11-123j20, complete sequence
          Length = 174636

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    atgcagctgctagcttggagtatc 117
             ||||||||||||| ||||||||||
Sbjct: 25964 atgcagctgctagtttggagtatc 25987
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>emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on chromosome 12, complete
              sequence
          Length = 167603

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 176    tgcgcgcgcatgcatatgcatgca 199
              ||||||||||||||| ||||||||
Sbjct: 125170 tgcgcgcgcatgcatgtgcatgca 125193
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>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
              sequence
          Length = 302665

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 121206 catgcatatgcatgcatgca 121187
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>emb|CT573093.3| CH250-1K10, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   gagtatctgggacgggacat 130
             ||||||||||||||||||||
Sbjct: 40629 gagtatctgggacgggacat 40648
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>emb|AL954325.8| Mouse DNA sequence from clone RP23-416H10 on chromosome 2, complete
              sequence
          Length = 195457

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 176    tgcgcgcgcatgcatatgcatgcatgca 203
              |||||||||||| | |||||||||||||
Sbjct: 112743 tgcgcgcgcatgtacatgcatgcatgca 112770
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>emb|AL450004.4|HS520K3 Homo sapiens chromosome 9 BAC RP11-520K3, complete sequence
          Length = 174662

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 94     atgcagctgctagcttggagtatc 117
              ||||||||||||| ||||||||||
Sbjct: 108132 atgcagctgctagtttggagtatc 108155
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>dbj|AB216157.1| Equus caballus DNA, microsatellite TKY2214
          Length = 238

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 gcatgcatatgcatgcatgc 202
           ||||||||||||||||||||
Sbjct: 18  gcatgcatatgcatgcatgc 37
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>emb|AL626774.23| Mouse DNA sequence from clone RP23-198O15 on chromosome 4, complete
              sequence
          Length = 181545

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    catgcatatgcatgcatgca 203
              ||||||||||||||||||||
Sbjct: 117735 catgcatatgcatgcatgca 117754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,310,258
Number of Sequences: 3902068
Number of extensions: 3310258
Number of successful extensions: 89887
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89226
Number of HSP's gapped (non-prelim): 661
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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