ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45a03 |
|---|---|
| Clone Library Name | barley_pub |
>ZN263_HUMAN (O14978) Zinc finger protein 263 (Zinc finger protein FPM315)| Length = 683 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +2 Query: 74 RYSHVYIL*RLKTSYLLYPSSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVPGKAG 253 R SH+ I R LYP S G + + P + AH+ E + + L T G + G Sbjct: 529 RSSHLVIHERTHERERLYPFSECGEAVSDSTPFLTNHGAHKAEKKLFECL-TCGKSFRQG 587 Query: 254 NHICSSRRAHIG 289 H+ +R H G Sbjct: 588 MHLTRHQRTHTG 599
>RAD3_SCHPO (Q02099) Protein kinase rad3 (EC 2.7.11.1) (DNA-repair protein rad3)| Length = 2386 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 250 RESHLQLPACSYWFCVLLANKAPSYPGISG 339 + HL+ A WF ++LA K P Y I+G Sbjct: 927 QNEHLRFYAIKAWFSLILATKEPEYSSIAG 956
>RAB7L_MOUSE (Q91YQ1) Ras-related protein Rab-7L1 (Rab-7-like protein 1)| Length = 204 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +1 Query: 205 SNETTLAYSRRARKGRESHLQLPACSYWFCVLLANKAPSYP 327 +N TT + S+R ++ +S L LP+ C+LLANK+ P Sbjct: 91 TNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLSP 131
>K6PF_LISMO (Q8Y6W0) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 29.3 bits (64), Expect = 3.9 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%) Frame = +2 Query: 185 SAHRHETLMKQHLPTVGVPGKAGNHICSSRRAHIGFACFSRTRLPPIPE-------SQVT 343 S H E L K+ PT+G+PG N I S IGF T L + + + T Sbjct: 105 SYHGAEALTKRGFPTIGIPGTIDNDI-SGTDFTIGFDTALNTVLDALDKIRDTATSHERT 163 Query: 344 WLTEQLGEVSFELAI 388 ++ E +G + ++A+ Sbjct: 164 FIIEVMGRDAGDIAL 178
>K6PF_LISMF (Q71Z96) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 29.3 bits (64), Expect = 3.9 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%) Frame = +2 Query: 185 SAHRHETLMKQHLPTVGVPGKAGNHICSSRRAHIGFACFSRTRLPPIPE-------SQVT 343 S H E L K+ PT+G+PG N I S IGF T L + + + T Sbjct: 105 SYHGAEALTKRGFPTIGIPGTIDNDI-SGTDFTIGFDTALNTVLDALDKIRDTATSHERT 163 Query: 344 WLTEQLGEVSFELAI 388 ++ E +G + ++A+ Sbjct: 164 FIIEVMGRDAGDIAL 178
>K6PF_LISIN (Q92BE4) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 29.3 bits (64), Expect = 3.9 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%) Frame = +2 Query: 185 SAHRHETLMKQHLPTVGVPGKAGNHICSSRRAHIGFACFSRTRLPPIPE-------SQVT 343 S H E L K+ PT+G+PG N I S IGF T L + + + T Sbjct: 105 SYHGAEALTKRGFPTIGIPGTIDNDI-SGTDFTIGFDTALNTVLDALDKIRDTATSHERT 163 Query: 344 WLTEQLGEVSFELAI 388 ++ E +G + ++A+ Sbjct: 164 FIIEVMGRDAGDIAL 178
>OR6K2_HUMAN (Q8NGY2) Olfactory receptor 6K2| Length = 324 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = -1 Query: 133 TWIK*IRCF*PLKYIYMRISL-VLWIRRAVQL-PRLYSDMYTF 11 +W+K + CF PL +IY I + L I VQL L++ MYTF Sbjct: 20 SWVKSVVCFVPLLFIYAFIVVGNLVIITVVQLNTHLHTPMYTF 62
>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)| Length = 1203 Score = 28.9 bits (63), Expect = 5.1 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Frame = +2 Query: 131 SSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVPGKAGNHICSS----RRAHIGFAC 298 SSS G ++ V F+A+ E L L T PG G ICSS + + Sbjct: 1047 SSSQGSLMEQISSVVTRFTANISE-LNSMMLSTAATPGPPGTPICSSYLIPKEIQLPTTM 1105 Query: 299 FSRTRLPPIPESQVT 343 + + P+P +VT Sbjct: 1106 TTFAEIQPLPAIEVT 1120
>POLN_MANCV (Q69014) Non-structural polyprotein [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC 2.7.7. Length = 2208 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Frame = +1 Query: 163 ITVSVHVQCSPPRNSNETTLAYSRRARKGRESHL---QLPACSY--WFCVLLANKAPSYP 327 I V+ H Q + NSN T +S + + Q + S W + NK P +P Sbjct: 1907 ILVAEHKQVNRHFNSNSVTFGWSTAPVNPMAAEIVTNQAHSTSRHAWLSIGAQNKGPLFP 1966 Query: 328 GISGHLAD 351 GI H D Sbjct: 1967 GIPNHFPD 1974
>RAB7L_HUMAN (O14966) Ras-related protein Rab-7L1 (Rab-7-like protein 1)| Length = 203 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 205 SNETTLAYSRRARKGRESHLQLPACSYWFCVLLANKAPSYP 327 +N TT + S+R ++ +S L LP C+LLANK P Sbjct: 91 TNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLSP 131
>Y2418_PSEAE (Q9I163) Hypothetical protein PA2418| Length = 286 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 164 LPSVFMFSAHRHETLMKQHLPTVGVPGKAG 253 LPS + R++TL+ +P VG+P +AG Sbjct: 129 LPSSDKMNPPRYQTLLDADIPRVGLPDRAG 158
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +3 Query: 243 ERPGITFAAPGVLILVLRASREQGSLLSRNLRSPG*PNS*AR 368 +RPG A V L+ AS E G+L ++ + SPG PN R Sbjct: 350 DRPGTPVPAVEVPELMDAASSEPGALDAKPVESPGDPNQLTR 391
>MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)| Length = 370 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/30 (43%), Positives = 13/30 (43%) Frame = +2 Query: 191 HRHETLMKQHLPTVGVPGKAGNHICSSRRA 280 H H H PT G PG AG SS A Sbjct: 184 HHHHAAGHHHHPTAGAPGTAGGASSSSNGA 213
>CIP4_HUMAN (Q15642) Cdc42-interacting protein 4 (Thyroid receptor-interacting| protein 10) (TRIP-10) Length = 545 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 355 FGQPGDLRFRDRREPCSREARKTNMSTP 272 F +PGD+ F D +P +R +++ TP Sbjct: 276 FARPGDVEFEDFSQPMNRAPSDSSLGTP 303
>ZN366_HUMAN (Q8N895) Zinc finger protein 366| Length = 744 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/49 (40%), Positives = 22/49 (44%) Frame = +2 Query: 104 LKTSYLLYPSSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVPGKA 250 L T Y YP G M P +PS F RH L KQ P +P KA Sbjct: 170 LPTPYPYYPKVHPGLMFPFFVPSSSPFPFSRHTFLPKQP-PEPLLPRKA 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,038,452 Number of Sequences: 219361 Number of extensions: 1156603 Number of successful extensions: 2654 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2654 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
