ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ201159.1| Hordeum vulgare subsp. spontaneum cultivar H602 p... 807 0.0
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.092
3gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 46 0.092
4dbj|AB109892.1| Oryza sativa (japonica cultivar-group) PHYB mRNA... 46 0.092
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
6dbj|AB183525.1| Oryza sativa (japonica cultivar-group) PhyB gene... 46 0.092
7emb|X57563.2|OSPHYB1GE O.sativa DNA for phyB1 gene 46 0.092
8dbj|AK071993.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.092
9dbj|AK063814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.092
10gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.092
11gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome... 44 0.36
12gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosom... 44 0.36
13gb|AC101795.9| Mus musculus chromosome 5, clone RP24-201P24, com... 40 5.7
14gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, comp... 40 5.7
15gb|BC073186.1| Xenopus laevis MGC80402 protein, mRNA (cDNA clone... 40 5.7
16gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosom... 40 5.7
17gb|AC162884.4| Mus musculus chromosome 5, clone RP24-169E23, com... 40 5.7
18gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosom... 40 5.7
19gb|AC134852.4| Mus musculus BAC clone RP24-248B6 from chromosome... 40 5.7
20gb|AC124766.3| Mus musculus BAC clone RP23-204I12 from 1, comple... 40 5.7
21gb|AC158168.2| Mus musculus BAC clone RP23-325B1 from chromosome... 40 5.7
22gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.7
23gb|AC080011.22| Homo sapiens 12 BAC RP11-316A16 (Roswell Park Ca... 40 5.7 
>gb|DQ201159.1| Hordeum vulgare subsp. spontaneum cultivar H602 phytochrome B mRNA,
            partial cds
          Length = 2633

 Score =  807 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Minus

                                                                        
Query: 18   tacatatcagaatacaatcgcgggagctgtacagctctccttatccataatacaagagat 77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2633 tacatatcagaatacaatcgcgggagctgtacagctctccttatccataatacaagagat 2574

                                                                        
Query: 78   attctcatgtatatatactttagcggctaaaaacatcgtatttactttatccaagtagta 137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2573 attctcatgtatatatactttagcggctaaaaacatcgtatttactttatccaagtagta 2514

                                                                        
Query: 138  gtcatgggcctatgctaccagctacattaccgtcagtgttcatgttcagtgctcaccgcc 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 gtcatgggcctatgctaccagctacattaccgtcagtgttcatgttcagtgctcaccgcc 2454

                                                                        
Query: 198  acgaaactctaatgaaacaacacttgcctacagtcggcgtgccaggaaaggccgggaatc 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 acgaaactctaatgaaacaacacttgcctacagtcggcgtgccaggaaaggccgggaatc 2394

                                                                        
Query: 258  acatttgcagctcccggcgtgctcatattggttttgcgtgcttctcgcgaacaaggctcc 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 acatttgcagctcccggcgtgctcatattggttttgcgtgcttctcgcgaacaaggctcc 2334

                                                                        
Query: 318  ctcctatcccggaatctcaggtcacctggctgaccgaacagttaggcgaggtcagctttg 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 ctcctatcccggaatctcaggtcacctggctgaccgaacagttaggcgaggtcagctttg 2274

                                                           
Query: 378  agcttgccatatcagctccgatccctagtctctgatcgccgaggctg 424
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 agcttgccatatcagctccgatccctagtctctgatcgccgaggctg 2227
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 142      tgggcctatgctaccagctacattaccgtcagtgt 176
                |||||||||||||| || ||||| |||||||||||
Sbjct: 11001123 tgggcctatgctacgagttacatgaccgtcagtgt 11001089



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 335      caggtcacctggctgaccgaacagttaggcgaggt 369
                |||||||||||| |||||||| ||||| |||||||
Sbjct: 11000880 caggtcacctggttgaccgaatagttatgcgaggt 11000846
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 335    caggtcacctggctgaccgaacagttaggcgaggt 369
              |||||||||||| |||||||| ||||| |||||||
Sbjct: 132242 caggtcacctggttgaccgaatagttatgcgaggt 132276



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 142    tgggcctatgctaccagctacattaccgtcagtgt 176
              |||||||||||||| || ||||| |||||||||||
Sbjct: 131999 tgggcctatgctacgagttacatgaccgtcagtgt 132033
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>dbj|AB109892.1| Oryza sativa (japonica cultivar-group) PHYB mRNA for phytochrome B,
            complete cds
          Length = 4223

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 142  tgggcctatgctaccagctacattaccgtcagtgt 176
            |||||||||||||| || ||||| |||||||||||
Sbjct: 4016 tgggcctatgctacgagttacatgaccgtcagtgt 3982



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 335  caggtcacctggctgaccgaacagttaggcgaggt 369
            |||||||||||| |||||||| ||||| |||||||
Sbjct: 3773 caggtcacctggttgaccgaatagttatgcgaggt 3739
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 142      tgggcctatgctaccagctacattaccgtcagtgt 176
                |||||||||||||| || ||||| |||||||||||
Sbjct: 10997886 tgggcctatgctacgagttacatgaccgtcagtgt 10997852



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 335      caggtcacctggctgaccgaacagttaggcgaggt 369
                |||||||||||| |||||||| ||||| |||||||
Sbjct: 10997643 caggtcacctggttgaccgaatagttatgcgaggt 10997609
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>dbj|AB183525.1| Oryza sativa (japonica cultivar-group) PhyB gene for phytochrome B,
            complete cds
          Length = 8636

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 142  tgggcctatgctaccagctacattaccgtcagtgt 176
            |||||||||||||| || ||||| |||||||||||
Sbjct: 8323 tgggcctatgctacgagttacatgaccgtcagtgt 8289



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 335  caggtcacctggctgaccgaacagttaggcgaggt 369
            |||||||||||| |||||||| ||||| |||||||
Sbjct: 8080 caggtcacctggttgaccgaatagttatgcgaggt 8046
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>emb|X57563.2|OSPHYB1GE O.sativa DNA for phyB1 gene
          Length = 4095

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 142  tgggcctatgctaccagctacattaccgtcagtgt 176
            |||||||||||||| || ||||| |||||||||||
Sbjct: 3885 tgggcctatgctacgagttacatgaccgtcagtgt 3851



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 335  caggtcacctggctgaccgaacagttaggcgaggt 369
            |||||||||||| |||||||| ||||| |||||||
Sbjct: 3638 caggtcacctggttgaccgaatagttatgcgaggt 3604
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>dbj|AK071993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093E19, full
            insert sequence
          Length = 3918

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 142  tgggcctatgctaccagctacattaccgtcagtgt 176
            |||||||||||||| || ||||| |||||||||||
Sbjct: 3775 tgggcctatgctacgagttacatgaccgtcagtgt 3741



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 335  caggtcacctggctgaccgaacagttaggcgaggt 369
            |||||||||||| |||||||| ||||| |||||||
Sbjct: 3532 caggtcacctggttgaccgaatagttatgcgaggt 3498
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>dbj|AK063814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H04, full
           insert sequence
          Length = 716

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 142 tgggcctatgctaccagctacattaccgtcagtgt 176
           |||||||||||||| || ||||| |||||||||||
Sbjct: 529 tgggcctatgctacgagttacatgaccgtcagtgt 495



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 335 caggtcacctggctgaccgaacagttaggcgaggt 369
           |||||||||||| |||||||| ||||| |||||||
Sbjct: 286 caggtcacctggttgaccgaatagttatgcgaggt 252
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 142   tgggcctatgctaccagctacattaccgtcagtgt 176
             |||||||||||||| || ||||| |||||||||||
Sbjct: 44608 tgggcctatgctacgagttacatgaccgtcagtgt 44574



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 335   caggtcacctggctgaccgaacagttaggcgaggt 369
             |||||||||||| |||||||| ||||| |||||||
Sbjct: 44365 caggtcacctggttgaccgaatagttatgcgaggt 44331
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>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence
          Length = 159703

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 171   cagtgttcatgttcagtgctca 192
             ||||||||||||||||||||||
Sbjct: 32826 cagtgttcatgttcagtgctca 32847
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>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence
          Length = 228486

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 171   cagtgttcatgttcagtgctca 192
             ||||||||||||||||||||||
Sbjct: 48445 cagtgttcatgttcagtgctca 48466
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>gb|AC101795.9| Mus musculus chromosome 5, clone RP24-201P24, complete sequence
          Length = 170688

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tatacatatcagaatacaat 35
             ||||||||||||||||||||
Sbjct: 52399 tatacatatcagaatacaat 52418
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>gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, complete sequence
          Length = 187098

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 74     agatattctcatgtatatatactt 97
              ||||||| ||||||||||||||||
Sbjct: 138416 agatattgtcatgtatatatactt 138439
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>gb|BC073186.1| Xenopus laevis MGC80402 protein, mRNA (cDNA clone MGC:80402
           IMAGE:5154783), complete cds
          Length = 2727

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  agagatattctcatgtatat 91
           ||||||||||||||||||||
Sbjct: 688 agagatattctcatgtatat 707
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>gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosome Y, complete sequence
          Length = 166529

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     agatattctcatgtatatat 93
              ||||||||||||||||||||
Sbjct: 138012 agatattctcatgtatatat 137993
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>gb|AC162884.4| Mus musculus chromosome 5, clone RP24-169E23, complete sequence
          Length = 158942

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tatacatatcagaatacaat 35
              ||||||||||||||||||||
Sbjct: 136725 tatacatatcagaatacaat 136744
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>gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosome Y, complete sequence
          Length = 159604

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    agatattctcatgtatatat 93
             ||||||||||||||||||||
Sbjct: 91837 agatattctcatgtatatat 91818
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>gb|AC134852.4| Mus musculus BAC clone RP24-248B6 from chromosome Y, complete sequence
          Length = 186637

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    agatattctcatgtatatat 93
             ||||||||||||||||||||
Sbjct: 21280 agatattctcatgtatatat 21261
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>gb|AC124766.3| Mus musculus BAC clone RP23-204I12 from 1, complete sequence
          Length = 196490

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    agatattctcatgtatatatactt 97
             ||||||| ||||||||||||||||
Sbjct: 53374 agatattgtcatgtatatatactt 53397
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>gb|AC158168.2| Mus musculus BAC clone RP23-325B1 from chromosome 6, complete sequence
          Length = 184841

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    atacaagagatattctcatgtata 90
             |||||||||||||||||| |||||
Sbjct: 30745 atacaagagatattctcaggtata 30768
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     tcacctggctgaccgaacag 358
               ||||||||||||||||||||
Sbjct: 3546287 tcacctggctgaccgaacag 3546306
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>gb|AC080011.22| Homo sapiens 12 BAC RP11-316A16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106902

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aagagatattctcatgtata 90
             ||||||||||||||||||||
Sbjct: 64745 aagagatattctcatgtata 64726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,259,906
Number of Sequences: 3902068
Number of extensions: 3259906
Number of successful extensions: 69948
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69843
Number of HSP's gapped (non-prelim): 105
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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