>NIFU_AZOCH (P23121) Nitrogen fixation protein nifU|
          Length = 309

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 100 SCPEHGHDEI*ARFPSPARQWPARWSSSPELSPL 201
           SC + G +E+    PS  R WP R  ++P+LS L
Sbjct: 195 SCADQGQEEVKVLAPSRLRSWPRRLRATPKLSNL 228

>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 280  VRAQLRVAGGQEAVAHGLAPHFQHDQGEGSALVTSSIGPAI 158
            V A L + G  E   HG++ + +  Q +G+  +TS IGP I
Sbjct: 1681 VAAPLAIHGTDETCVHGVSVNVKVTQIKGTVAITSLIGPII 1721

>PTHB1_XENLA (Q6AX60) Protein PTHB1 (Parathyroid hormone-responsive B1 gene|
           protein homolog)
          Length = 849

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 43  KKIQYTPSSIHPYS--NENRPSCPEHGHDEI*ARFPSPARQWPARWSSSP 186
           KK+ Y+PS  HPYS  N+   +     H+ +   +     +W A+ S +P
Sbjct: 281 KKLDYSPSCFHPYSSVNDGTINTLVGNHNNMLLVYQDVTLKWAAQLSQTP 330

>UBC7_YEAST (Q02159) Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 165

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 10  ITFPEPFITSPKKIQYTPSSIHPYSNENRPSC 105
           + FP+ +  SP K+ +TPS +HP    N   C
Sbjct: 58  LEFPKDYPLSPPKLTFTPSILHPNIYPNGEVC 89

>LPIN1_MOUSE (Q91ZP3) Lipin-1 (Fatty liver dystrophy protein)|
          Length = 924

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +1

Query: 61  PSSIHPYSN----ENRPSCPEHGHDEI*ARFPSPARQWPARWSSSPELSPLPDHVGNGV 225
           P+ + P+ +    EN PS   H      A +PS  R+W    SS  +    P H+  GV
Sbjct: 202 PNDVPPFQDDIPKENFPSISTHPQS---ASYPSSDREWSPSPSSLVDCQRTPPHLAEGV 257

>PALB_NEUCR (Q7RZP7) Calpain-like protease palB/rim-13 (EC 3.4.22.-) (Cysteine|
           protease rim-13)
          Length = 986

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 3   PNDYFSRAFYNLSQKNSIYTILHPSLLEREQAIMSGAWTRRNLGSFPLTGKAMAGPMELV 182
           P+  F+ +F++    NS  TI   S        ++GAWTRR  G   +    +  P   +
Sbjct: 607 PSYSFTLSFFS----NSPLTISPASDPLPYNETITGAWTRRTAGGSTVYPSYVTNPQYAL 662

Query: 183 TRAEPSP 203
           T   PSP
Sbjct: 663 TLTRPSP 669

>ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)|
           (p150) (c-ABL) (Abelson murine leukemia viral oncogene
           homolog 1)
          Length = 1130

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 68  PSIPTRTRTGHHVRSMDTTKSRLVSPHRQGNGRPDGARHQ 187
           P +PT+TRT         T      PH +G G  D   H+
Sbjct: 526 PELPTKTRTSRRAAEHRDTTDVPEMPHSKGQGESDPLDHE 565

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = +1

Query: 25  PFITSPKKIQYTPSSIHPYSNENRPSCPEHGHDEI*A----RFPSPARQWPARWSSSPEL 192
           P   +P   QY+P   +P      P  P  G +   A    ++P P R WP   S SP  
Sbjct: 365 PQQNTPPTSQYSP---YPQRYPTPPGLPAGGSNHRTAYSTHQYPEPNRPWPGGSSPSPGS 421

Query: 193 S-PLPDHVGNGVP 228
             PLP    + VP
Sbjct: 422 GHPLPPASPHHVP 434

>SYC1_STRCO (Q9L0Q6) Cysteinyl-tRNA synthetase 1 (EC 6.1.1.16) (Cysteine--tRNA|
           ligase 1) (CysRS 1)
          Length = 613

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 166 PAIALPVRGNEPRFRRVHAPDMMACSRSSRDGWRM 62
           P + +P RG++ R RR   P     +RS  DG R+
Sbjct: 101 PRLGVPARGDKKRARRPGVPTRGGVARSGNDGPRV 135

>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)|
          Length = 1426

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 52  QYTPSSIHPYSNENRPSCPEHGHDEI*ARFPSPARQWPAR 171
           Q+TP S+ P SN   P      H +  A  P+PA++ PA+
Sbjct: 137 QHTPHSMTP-SNATAPRSSTPSHGQTTATEPTPAQKTPAK 175

>HM23_CAEEL (P34663) Homeobox protein ceh-23|
          Length = 305

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +1

Query: 22  EPFITSPKKIQYTPSSIHPYSN------ENRPSCPE 111
           +PFI +P  +Q  PS++   +N        R SCPE
Sbjct: 82  QPFIPNPSLLQANPSAVEALANALFATTSRRASCPE 117

>GLPF_STRR6 (P0A3Q8) Glycerol uptake facilitator protein|
          Length = 234

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 253 GQEAVAHGLAPHFQHDQGEGSALVTSSIGPAI 158
           GQ  V     PH++ ++  G+ L T S GPAI
Sbjct: 97  GQILVWLQFKPHYEAEENAGNILATFSTGPAI 128

>GLPF_STRPN (P0A3Q7) Glycerol uptake facilitator protein|
          Length = 234

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 253 GQEAVAHGLAPHFQHDQGEGSALVTSSIGPAI 158
           GQ  V     PH++ ++  G+ L T S GPAI
Sbjct: 97  GQILVWLQFKPHYEAEENAGNILATFSTGPAI 128

>ERYA2_SACER (Q03132) Erythronolide synthase, modules 3 and 4 (EC 2.3.1.94) (ORF|
            2) (6-deoxyerythronolide B synthase II) (DEBS 2)
          Length = 3566

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 109  EHGHDEI*ARFPSPARQWPARWSSSPELSPLPD 207
            E GHD++  R  S  R+W +R + +P  S + +
Sbjct: 3513 EDGHDDVGQRLESLLRRWNSRRADAPSTSAISE 3545

>T2MZ_METTF (P29566) Probable type II restriction enzyme MthZI (EC 3.1.21.4)|
           (Endonuclease MthZI) (R.MthZI)
          Length = 202

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 145 RGNEPRFRRVHAPDMMACSRSSRDGWRMVYIEFFWERL*KALEK 14
           +G  PR     +  +  C   S +GW+  Y+E + +R+ KA +K
Sbjct: 42  QGTRPRVVGQMSDLIHECPDKSYEGWKKWYLEHYSDRIEKATKK 85

>UBC3_SCHPO (P40984) Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase hus5) (Ubiquitin carrier
           protein hus5) (SUMO protein ligase) (SUMO-conjugating
           enzyme) (Ubiquitin carrier protein 9)
          Length = 157

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 10  ITFPEPFITSPKKIQYTPSSIHP 78
           + FPE + T P K ++TP   HP
Sbjct: 62  MAFPEEYPTRPPKCRFTPPLFHP 84

>RGA2_YEAST (Q06407) Rho-type GTPase-activating protein 2|
          Length = 1009

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 25  PFITSPKKIQYTPSSIHPYSNENRPSC 105
           P   SPK++ YTP   H Y +  +  C
Sbjct: 768 PLSPSPKRLDYTPDGSHLYGSSLQARC 794

>ATP8_PONPY (Q35584) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 68

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 62  HPPSIPTRTRTGHHVRSMDTTKSRLVSPH 148
           HPP+ P  T+T  H +  +   +++ SPH
Sbjct: 34  HPPTPPKFTKTKPHAKPWELKWTKIYSPH 62

>ATP8_PONPP (P92896) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 68

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 62  HPPSIPTRTRTGHHVRSMDTTKSRLVSPH 148
           HPP+ P  T+T  H +  +   +++ SPH
Sbjct: 34  HPPTPPKFTKTKPHAKPWELKWTKIYSPH 62

>YETS2_MOUSE (Q3TUF7) YEATS domain-containing protein 2|
          Length = 1407

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 268  LRVAGGQEAVAHGLAPHFQHD----QGEGSALVTSSIGPAIALP 149
            LRVAGG    A   A  F  +    Q EGS  V+SS+G  I  P
Sbjct: 931  LRVAGGVITAAPSPAVAFSANGAVHQSEGSTPVSSSVGSIIKTP 974


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,077,918
Number of Sequences: 219361
Number of extensions: 1027891
Number of successful extensions: 3355
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3355
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)