>DEOB_MYCPU (Q98QT4) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)|
          Length = 395

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 177 IVCTDHGNVLHFP-QLQTWESL*LVPNAWCANSELLRNPDSVTDLSTIGTMSWIIRRNYA 353
           I+  DHGN   FP    T E+L L+       S+  +NP  +  L  +GT   I+ RN+ 
Sbjct: 326 IITADHGNDPTFPGSSHTREALPLI-----VYSKAFKNPSYLKTLLGLGTSGNIVARNFG 380

Query: 354 MSPIGLG 374
           +  I  G
Sbjct: 381 LKTIETG 387

>VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R) (Vitellogenin receptor) (VTG
           receptor)
          Length = 863

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +2

Query: 167 GVGNCLHRPWQCSTFPSASDMGISVTCSK--CVVCQFR 274
           G G C+H+ W+C   P   D    + C    C   QFR
Sbjct: 265 GSGECIHKKWRCDGDPDCKDGSDEINCPSRTCRPDQFR 302

>VLDLR_RAT (P98166) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R)
          Length = 873

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 167 GVGNCLHRPWQCSTFPSASDMGISVTC 247
           G G C+H+ W+C   P   D    V C
Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273

>VLDLR_RABIT (P35953) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R)
          Length = 873

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 167 GVGNCLHRPWQCSTFPSASDMGISVTC 247
           G G C+H+ W+C   P   D    V C
Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273

>VLDLR_MOUSE (P98156) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R)
          Length = 873

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 167 GVGNCLHRPWQCSTFPSASDMGISVTC 247
           G G C+H+ W+C   P   D    V C
Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273

>VLDLR_HUMAN (P98155) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R)
          Length = 873

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 167 GVGNCLHRPWQCSTFPSASDMGISVTC 247
           G G C+H+ W+C   P   D    V C
Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273

>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)|
          Length = 520

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 79  TMPEWVRHTGYKKSGTRAEKYRQVSSCVCR 168
           T PEW RH   K SG  + K R+ SS   R
Sbjct: 474 TAPEWSRHVNNKSSGPSSSKGRKGSSYTAR 503

>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear|
           transcription factor, X box-binding, 1)
          Length = 1104

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 214 GKCRTLPWSVQTIAHPCK---RMRKPDDIFLHACHFSCNPCAAP 92
           GK +   WS   I H C    R ++P     H+C+  C+P   P
Sbjct: 408 GKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCP 451

>HYIN_PANAY (Q47860) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 460

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 173 GNCLHRPWQCSTFPSASDMG--ISVTCSKCVVCQFR 274
           G C+ RPW    + S SD G  + +  + C +  FR
Sbjct: 148 GGCVSRPWSAGLYRSPSDTGGSVRIPAAFCGIAGFR 183

>VHR1_COWPX (P12932) Host range protein 1|
          Length = 669

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 16/73 (21%)
 Frame = +3

Query: 171 WAIVCTDHG-NVLHF----PQLQ-----------TWESL*LVPNAWCANSELLRNPDSVT 302
           ++++ TDHG  ++H     P+L+           TW+ + L PNA   ++++ +N +SV 
Sbjct: 590 FSLIFTDHGAKIIHRYANNPELRAYYESKQNKIYTWKYMILFPNAIVKHNKIHKNIESVD 649

Query: 303 DLSTIGTMSWIIR 341
           D + I  + + I+
Sbjct: 650 DNTYISNLPYTIK 662

>LRP5_HUMAN (O75197) Low-density lipoprotein receptor-related protein 5 precursor|
          Length = 1615

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = +2

Query: 152  PHAFA---GVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQF 271
            P  FA   G  +C+   W+C  FP   D      C  C   QF
Sbjct: 1261 PDQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQF 1303

>LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related protein 5 precursor|
            (LRP7) (Lr3)
          Length = 1614

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 152  PHAFA---GVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQF 271
            P  FA   G  +C+   W+C  FP  +D      C  C   QF
Sbjct: 1260 PDQFACTTGEIDCIPGAWRCDGFPECADQSDEEGCPVCSASQF 1302

>SYD_CHLTE (Q8KCT7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 603

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 99  AHGLQEKW--HACRKI---SSGFLMRLQGWAIVCTDHGNVL 206
           A GLQ ++  H C ++   S G L+R+ GW     DHG ++
Sbjct: 8   ADGLQNRFRTHYCGRLNRKSEGELVRIAGWVHRIRDHGGLI 48

>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3|
           precursor (hLRp105)
          Length = 770

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 173 GNCLHRPWQCSTFPSASDMGISVTCS 250
           G CL  PWQC+T     D      CS
Sbjct: 176 GKCLPGPWQCNTVDECGDGSDEGNCS 201

>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor|
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 173  GNCLHRPWQCSTFPSASDMGISVTC 247
            GNC+HR W C       DM     C
Sbjct: 1281 GNCIHRAWLCDRDNDCGDMSDEKDC 1305

>LRP6_HUMAN (O75581) Low-density lipoprotein receptor-related protein 6 precursor|
          Length = 1613

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 161  FAGVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQFR 274
            F G  +C+   W+C  F    D    + C  C   QF+
Sbjct: 1257 FTGEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQ 1294

>CO8B_PAROL (Q9PVW7) Complement component C8 beta chain precursor (Complement|
           component 8 beta subunit)
          Length = 588

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 173 GNCLHRPWQCSTFPSASDMGISVTCSK 253
           G C+HR  QC+      DM   V C K
Sbjct: 127 GRCIHRTLQCNGEDDCGDMSDEVGCKK 153

>LDLR_HUMAN (P01130) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 860

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 173 GNCLHRPWQCSTFPSASDMGISVTCSKCVVCQ 268
           GNC+H   QC       DM   V C    +C+
Sbjct: 246 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE 277

>UBIE_GEOKA (Q5KXU0) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 234

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 213 GNVEHCHGRCRQLPTPANA*GNLTIFFCTR 124
           GNV+  HG   QLP P N+   +TI F  R
Sbjct: 98  GNVKLIHGNAMQLPFPDNSFDYVTIGFGLR 127

>NAPA_MAGMG (Q93HX3) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 827

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 273 ELLRNPDSVTDLSTIGTMSWIIRRNYAMSPI 365
           E L+ PD VT +   G+  W I   YA S +
Sbjct: 130 EQLKKPDGVTRVGMFGSGQWTIWEGYAASKL 160

>LRP6_MOUSE (O88572) Low-density lipoprotein receptor-related protein 6 precursor|
          Length = 1613

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 161  FAGVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQFR 274
            F G  +C+   W+C  F    D    + C  C   QF+
Sbjct: 1257 FTGDIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQ 1294

>MAUJ_PARDE (P22566) Methylamine utilization protein mauJ|
          Length = 287

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 63  ITTKKDDARMGAAHGLQEKWHACRKISSGFLMRLQGWAIVCTDH 194
           IT    +  +  AHG+ + W   + + +G  M + GW I    H
Sbjct: 87  ITAPSAETALAQAHGVLQAWLLRQVVETGRGMAIAGWRIADPAH 130

>GLNE_LEIXX (Q6AFH2) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 1007

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = +3

Query: 6   FNTHKHSTTTLHELLFY-----VTITTKKDDARMGAAHGLQEKWHACRKISSGF 152
           +N  KH    LHE LFY            +DAR+    GL  +    R  + GF
Sbjct: 477 WNEIKHRVRGLHERLFYRPLLSAVAAMPNEDARLSGEAGLTSEQAQARLAAIGF 530

>SYD_RHIME (Q92QV4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 595

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 126 ACRKISSGFLMRLQGWAIVCTDHGNVL 206
           A RK   G  +RL GW     DHG VL
Sbjct: 11  ALRKSDVGSTVRLSGWVHRVRDHGGVL 37

>CYSI_BUCAI (P57502) Sulfite reductase [NADPH] hemoprotein beta-component (EC|
           1.8.1.2) (SIR-HP) (SIRHP)
          Length = 569

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 83  CPNGCGTRVTRKVARVQKNIVRFPHAFAG--VGN 178
           CPNGCG  +  ++  + K+I R+     G  +GN
Sbjct: 478 CPNGCGRSLLAEIGLIGKSIGRYNLYIGGNRIGN 511


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,533,170
Number of Sequences: 219361
Number of extensions: 1374668
Number of successful extensions: 3608
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3608
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)