ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-... 28 4.4
2EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5) 28 7.5

>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated|
            transcription factor 1) (DATF-1) (hDido1)
          Length = 2240

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -1

Query: 299  AADEAVQLTLPG------PSPEQPTHRTAASIIPHLPLPWTA 192
            +AD AV  T PG      P PE P  +  +S+ P  P P TA
Sbjct: 1248 SADAAVSTTPPGSPPPPPPLPEPPVLKVLSSLKPAAPSPATA 1289



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>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)|
          Length = 427

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 313 YGSPPPPMKPYN*LFLVHRRSSQHTAPPPV 224
           Y SPPPP+K Y           +H +PPPV
Sbjct: 27  YSSPPPPVKHYT-------PPVKHYSPPPV 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,825,977
Number of Sequences: 219361
Number of extensions: 690171
Number of successful extensions: 1787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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