ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 615 bits (310), Expect = e-173 Identities = 310/310 (100%) Strand = Plus / Minus Query: 2 gaaaagaatgcgcacacgagtgcttattcatgcctcattgtcctcaccctatcaacatca 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2993 gaaaagaatgcgcacacgagtgcttattcatgcctcattgtcctcaccctatcaacatca 2934 Query: 62 tctacgacacaatcatcattttccatcatccactaatccctggcaactaattaccgcaac 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2933 tctacgacacaatcatcattttccatcatccactaatccctggcaactaattaccgcaac 2874 Query: 122 cacccagaagccaatgaaaagtaacacaatacaccttgcgagacacgaaccgatccatga 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2873 cacccagaagccaatgaaaagtaacacaatacaccttgcgagacacgaaccgatccatga 2814 Query: 182 ccagcggacggacgactaccgaaagaaggaaacaaagaccatgctcagctcagatggaga 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 ccagcggacggacgactaccgaaagaaggaaacaaagaccatgctcagctcagatggaga 2754 Query: 242 cgctgttggggatgcccatggcggtgagccccagcgccttctccccgttggcgtccgacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2753 cgctgttggggatgcccatggcggtgagccccagcgccttctccccgttggcgtccgacg 2694 Query: 302 tgttggggta 311 |||||||||| Sbjct: 2693 tgttggggta 2684
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2447 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2388 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 2387 tgacatccgacgtgttggggta 2366
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2926 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2867 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 2866 tgacatccgacgtgttggggta 2845
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 65817 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 65758 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 65757 tgacatccgacgtgttggggta 65736 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 |||||| |||| |||||||||||||||| ||||||||| Sbjct: 47237 tcagatcgagatgctgttggggatgcccttggcggtga 47200
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 27821687 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 27821628 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 27821627 tgacatccgacgtgttggggta 27821606 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcgg 265 ||||||||||| |||||||||||||||| |||||| Sbjct: 30026449 tcagatggagatgctgttggggatgcccctggcgg 30026415 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 |||||| |||| |||||||||||||||| ||||||||| Sbjct: 27803107 tcagatcgagatgctgttggggatgcccttggcggtga 27803070
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2920 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2861 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 2860 tgacatccgacgtgttggggta 2839
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 27913011 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 27912952 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 27912951 tgacatccgacgtgttggggta 27912930 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcgg 265 ||||||||||| |||||||||||||||| |||||| Sbjct: 30117871 tcagatggagatgctgttggggatgcccctggcgg 30117837 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 |||||| |||| |||||||||||||||| ||||||||| Sbjct: 27894431 tcagatcgagatgctgttggggatgcccttggcggtga 27894394
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 1333 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 1274 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 1273 tgacatccgacgtgttggggta 1252
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2598 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2539 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 2538 tgacatccgacgtgttggggta 2517
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 2928 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2869 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 2868 tgacatccgacgtgttggggta 2847
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccgt 289 |||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 1498 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 1439 Query: 290 tggcgtccgacgtgttggggta 311 || | ||||||||||||||||| Sbjct: 1438 tgacatccgacgtgttggggta 1417
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 69.9 bits (35), Expect = 5e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 229 gctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccg 288 ||||| ||||||| ||||||||| ||||||||||| || |||||| |||||||| ||| Sbjct: 2902 gctcatatggagatgctgttgggaatgcccatggcagtaagcccctcggccttctcgccg 2843 Query: 289 ttggcgtccgacgtgttggggta 311 | ||||||||||||||||||| Sbjct: 2842 gtaacgtccgacgtgttggggta 2820
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtgagcccc 273 |||||||||||| |||||||||||||||| |||| ||||||||| Sbjct: 907 ctcagatggagatgctgttggggatgcccctggccgtgagcccc 864
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 229 gctcagatggagacgctgttggggatgcccatggcggtgagccc 272 ||||||||||||| |||||||||||||||| | ||||||||||| Sbjct: 755 gctcagatggagatgctgttggggatgcccttagcggtgagccc 712
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 229 gctcagatggagacgctgttggggatgcccatggcggtgagccc 272 ||||||||||||| |||||||||||||||| |||| |||||||| Sbjct: 4664 gctcagatggagatgctgttggggatgcccttggcagtgagccc 4621
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 63.9 bits (32), Expect = 3e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 229 gctcagatggagacgctgttggggatgcccatggcggtgagccccagcgccttctccccg 288 ||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||| ||| Sbjct: 369 gctcatatggagatgctgttgggaatgcccatggcagtgagcccctcgcccttctcgccg 310 Query: 289 ttggcgtccgacgtgttggg 308 || | |||||||||||||| Sbjct: 309 gtgacatccgacgtgttggg 290
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 229 gctcagatggagacgctgttggggatgcccatggcggtgagccc 272 ||||||||||||| |||||||||||||||| |||| |||||||| Sbjct: 2066 gctcagatggagatgctgttggggatgcccttggcagtgagccc 2023
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 223 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 273 ||||||| ||||||||| | |||||| ||||||||| |||||||||||||| Sbjct: 2666 tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 2616
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 60.0 bits (30), Expect = 4e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtgagccc 272 ||||||||||| |||||||||||||||| |||| |||||||| Sbjct: 2595 tcagatggagatgctgttggggatgcccttggcagtgagccc 2554
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 233 agatggagacgctgttggggatgcccatggcggtgagccc 272 ||||||||| |||||||||||||||| ||||||| ||||| Sbjct: 1084 agatggagatgctgttggggatgcccttggcggtaagccc 1045
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 233 agatggagacgctgttggggatgcccatggcggtgagccc 272 ||||||||| |||||||||||||||| ||||||| ||||| Sbjct: 2655 agatggagatgctgttggggatgcccttggcggtaagccc 2616
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcgg 265 ||||||||||| |||||||||||||||| |||||| Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcgg 2579
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcgg 265 ||||||||||| |||||||||||||||| |||||| Sbjct: 2695 tcagatggagatgctgttggggatgcccctggcgg 2661
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 231 tcagatggagacgctgttggggatgcccatggcgg 265 ||||||||||| |||||||||||||||| |||||| Sbjct: 81302 tcagatggagatgctgttggggatgcccctggcgg 81336
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcgg 265 ||||||||||| |||||||||||||||| |||||| Sbjct: 2728 tcagatggagatgctgttggggatgcccctggcgg 2694
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 |||||| |||| |||||||||||||||| ||||||||| Sbjct: 2601 tcagatcgagatgctgttggggatgcccttggcggtga 2564
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 |||||| |||| |||||||||||||||| ||||||||| Sbjct: 10786 tcagatcgagatgctgttggggatgcccttggcggtga 10823
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 ||||||||||| |||||||||||||||| |||| |||| Sbjct: 1556 tcagatggagatgctgttggggatgcccttggctgtga 1519
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 227 cagctcagatggagacgctgttggggatgcccat 260 ||||||| ||||||| |||||||||||||||||| Sbjct: 2920 cagctcaaatggagatgctgttggggatgcccat 2887
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 228 agctcagatggagacgctgttggggatgcccat 260 |||||| ||||||| |||||||||||||||||| Sbjct: 22970463 agctcaaatggagatgctgttggggatgcccat 22970431
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 228 agctcagatggagacgctgttggggatgcccat 260 |||||| ||||||| |||||||||||||||||| Sbjct: 22898654 agctcaaatggagatgctgttggggatgcccat 22898622
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 228 agctcagatggagacgctgttggggatgcccat 260 |||||| ||||||| |||||||||||||||||| Sbjct: 79740 agctcaaatggagatgctgttggggatgcccat 79708
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 46.1 bits (23), Expect = 0.066 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 gctgttggggatgcccatggcggtgag 269 |||||||||||||||| |||||||||| Sbjct: 3 gctgttggggatgcccttggcggtgag 29
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 797 ctcagatggagatgctgtttggaatgcccttggcggtga 759
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 46.1 bits (23), Expect = 0.066 Identities = 35/39 (89%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgcccatggcggtga 268 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 792 ctcagatggagatgctgtttggaatgcccttggcggtga 754
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3198 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 2965 gctgttggggatgcccatgccggtga 2940
>ref|XM_483276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2775 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 2763 gctgttggggatgcccatgccggtga 2738
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 44.1 bits (22), Expect = 0.26 Identities = 34/38 (89%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 ||||||||| ||||||||||||||||| || |||||| Sbjct: 137487 tcagatggaagcgctgttggggatgcccttgccggtga 137450
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.26 Identities = 34/38 (89%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 ||||||||| ||||||||||||||||| || |||||| Sbjct: 20830426 tcagatggaagcgctgttggggatgcccttgccggtga 20830389
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 25242563 gctgttggggatgcccatgccggtga 25242538 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 25209466 gctgttggggatgcccatgccggtga 25209491
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 107686 gctgttggggatgcccatgccggtga 107661 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 74589 gctgttggggatgcccatgccggtga 74614
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 17748 gctgttggggatgcccatgccggtga 17723
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 44.1 bits (22), Expect = 0.26 Identities = 34/38 (89%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 ||||||||| ||||||||||||||||| || |||||| Sbjct: 2693 tcagatggaagcgctgttggggatgcccttgccggtga 2656
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full insert sequence Length = 3196 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 2963 gctgttggggatgcccatgccggtga 2938
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds Length = 2232 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 2040 gctgttggggatgcccatgccggtga 2015
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 2448 gctgttggggatgcccatgccggtga 2423
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gctgttggggatgcccatggcggtga 268 ||||||||||||||||||| |||||| Sbjct: 2878 gctgttggggatgcccatgccggtga 2853
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.26 Identities = 34/38 (89%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgcccatggcggtga 268 ||||||||| ||||||||||||||||| || |||||| Sbjct: 21140661 tcagatggaagcgctgttggggatgcccttgccggtga 21140624
>gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182995 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ccacccagaagccaatgaaaa 141 ||||||||||||||||||||| Sbjct: 111481 ccacccagaagccaatgaaaa 111461
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgccc 258 |||||||||||| |||||| ||||||||| Sbjct: 2882 ctcagatggagatgctgtttgggatgccc 2854
>gb|AC107868.9| Mus musculus chromosome 17, clone RP23-405A17, complete sequence Length = 193624 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 aaccacccagaagccaatgaaaagt 143 |||||||||| |||||||||||||| Sbjct: 6038 aaccacccagcagccaatgaaaagt 6014
>gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0585E02, complete sequence Length = 138677 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggg 251 ||||||||||||||||||||| Sbjct: 35941 tcagatggagacgctgttggg 35921
>gb|AC124174.4| Mus musculus BAC clone RP23-181O22 from chromosome 3, complete sequence Length = 197553 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ccacccagaagccaatgaaaa 141 ||||||||||||||||||||| Sbjct: 163213 ccacccagaagccaatgaaaa 163193
>gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1023E01, complete sequence Length = 140322 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggg 251 ||||||||||||||||||||| Sbjct: 62714 tcagatggagacgctgttggg 62694
>gb|AF514331.1| Scyllarus arctus 28S ribosomal RNA gene, partial sequence Length = 475 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 91 ccactaatccctggcaactaattac 115 ||||||||||||||||||| ||||| Sbjct: 431 ccactaatccctggcaactgattac 455
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggg 251 ||||||||||||||||||||| Sbjct: 13606806 tcagatggagacgctgttggg 13606786
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 ctcagatggagacgctgttggggatgccc 258 |||||||||||| |||||| ||||||||| Sbjct: 5276962 ctcagatggagatgctgtttgggatgccc 5276990
>gb|AC154544.2| Mus musculus BAC clone RP23-228G19 from chromosome 17, complete sequence Length = 183626 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 aaccacccagaagccaatgaaaagt 143 |||||||||| |||||||||||||| Sbjct: 147032 aaccacccagcagccaatgaaaagt 147008
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 ctcagatggagacgctgttggggatgccc 258 |||||||||||| |||||| ||||||||| Sbjct: 3265 ctcagatggagatgctgtttgggatgccc 3293
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgccc 258 |||||||||||| |||||| ||||||||| Sbjct: 2881 ctcagatggagatgctgtttgggatgccc 2853
>dbj|AK064795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C19, full insert sequence Length = 3008 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggg 251 ||||||||||||||||||||| Sbjct: 2799 tcagatggagacgctgttggg 2779
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 ctcagatggagacgctgttggggatgccc 258 |||||||||||| |||||| ||||||||| Sbjct: 2043 ctcagatggagatgctgtttgggatgccc 2015
>dbj|AK060791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E01, full insert sequence Length = 2282 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggg 251 ||||||||||||||||||||| Sbjct: 2098 tcagatggagacgctgttggg 2078
>emb|AL445074.4|CNS07ECX Human chromosome 14 DNA sequence BAC R-313C4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 144538 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ttccatcatccactaatccctggcaacta 110 ||||||| |||||||||||||||||||| Sbjct: 2646 ttccatctcccactaatccctggcaacta 2674
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 tccatgaccagcggacggac 194 |||||||||||||||||||| Sbjct: 181139 tccatgaccagcggacggac 181120
>ref|XM_657908.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5396.2), mRNA Length = 555 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggcgtccgacgtgttggggt 310 |||||||||||||||||||| Sbjct: 102 ggcgtccgacgtgttggggt 83
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atcaacatcatctacgacac 71 |||||||||||||||||||| Sbjct: 1401984 atcaacatcatctacgacac 1402003
>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a CpG island, complete sequence Length = 157379 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 atccctggcaactaattacc 116 |||||||||||||||||||| Sbjct: 53547 atccctggcaactaattacc 53528
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atcaacatcatctacgacac 71 |||||||||||||||||||| Sbjct: 1405674 atcaacatcatctacgacac 1405693
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence Length = 1304 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 tcagatggagacgctgttggggatgccc 258 ||||||||||| |||| ||||||||||| Sbjct: 134 tcagatggagatgctgctggggatgccc 161
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence Length = 1439 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 tcagatggagacgctgttggggatgccc 258 ||||||||||| |||| ||||||||||| Sbjct: 1214 tcagatggagatgctgctggggatgccc 1187
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atcaacatcatctacgacac 71 |||||||||||||||||||| Sbjct: 2173734 atcaacatcatctacgacac 2173715
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atcaacatcatctacgacac 71 |||||||||||||||||||| Sbjct: 1913432 atcaacatcatctacgacac 1913451
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atcaacatcatctacgacac 71 |||||||||||||||||||| Sbjct: 1705633 atcaacatcatctacgacac 1705614
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atcaacatcatctacgacac 71 |||||||||||||||||||| Sbjct: 1891170 atcaacatcatctacgacac 1891151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,450,599 Number of Sequences: 3902068 Number of extensions: 2450599 Number of successful extensions: 55779 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55359 Number of HSP's gapped (non-prelim): 409 length of query: 311 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 289 effective length of database: 17,147,199,772 effective search space: 4955540734108 effective search space used: 4955540734108 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
