ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44h01 |
|---|---|
| Clone Library Name | barley_pub |
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 35.4 bits (80), Expect = 0.067 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +2 Query: 221 FRLRCQSPESPSFWCPEEVQRSDSCCQHWRRP-GRPPAAGAQTPDSTGHHPW*GGQRRNP 397 F+ + Q P+ P + P+ Q + S +R GRPPA G TP P+ GG ++P Sbjct: 166 FQQQYQGPQGPGNFPPQPPQSTASPGPAGKRGIGRPPAGGPATPQINTPIPYNGGPAQSP 225 Query: 398 Q 400 Q Sbjct: 226 Q 226
>DLX5_CHICK (P50577) Homeobox protein DLX-5 (cDlx)| Length = 286 Score = 32.0 bits (71), Expect = 0.74 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +2 Query: 188 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDSTGHH 367 S S S+P + C SP+SP+ W P+ RS H P P+ G+ + + Sbjct: 205 SPSSSDP------MACNSPQSPAVWEPQGSSRSLGHHGHGHPPAANPSPGSYLESPSAWY 258 Query: 368 P 370 P Sbjct: 259 P 259
>NBN_BRARE (Q5I2W8) Nibrin (Nijmegen breakage syndrome protein 1 homolog)| Length = 818 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -1 Query: 338 LQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEIG-TADESP 216 +QL AGP V+N D+ Q PPD S G T +++P Sbjct: 624 MQLDRAGPAVTNQDTQTQSKRSPPDLEAHSSANKGPTKNKTP 665
>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 577 Score = 29.6 bits (65), Expect = 3.7 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Frame = -2 Query: 370 WVMSC----------GIWSLCSSCRRPARTSPMLTA*IRSLNFLRTPEGWA 248 WV SC G++ + +SC P RT PML R L+ L T G++ Sbjct: 412 WVESCVAFNHSYTDSGLFGIAASCY-PGRTLPMLQVMCRELHALTTDHGYS 461
>LIME1_HUMAN (Q9H400) Lck-interacting transmembrane adapter 1 (Lck-interacting| membrane protein) (Lck-interacting molecule) Length = 295 Score = 29.6 bits (65), Expect = 3.7 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 5/22 (22%) Frame = -2 Query: 370 WVMSC-----GIWSLCSSCRRP 320 WV+ C +W+LC++CRRP Sbjct: 13 WVLGCCALLLSLWALCTACRRP 34
>PSD_ZYMMO (Q9X5E3) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 246 Score = 29.6 bits (65), Expect = 3.7 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +3 Query: 153 FSVHQLREGIVGRHLRVIHVCGAFVCGANLQRAHPSGVRRKFR-DLIHAVNIGDVR-AGL 326 F VH R + GR R+ ++ GAFV A+L +A R+ F + +N+G + AGL Sbjct: 118 FDVHINRAPVPGRIARIAYIPGAFV-NADLDKASEKNERQHFMIETKEGINVGLTQIAGL 176 Query: 327 L 329 + Sbjct: 177 I 177
>YBY3_SCHPO (Q10198) Hypothetical protein C11C11.03 in chromosome II| Length = 624 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/65 (23%), Positives = 29/65 (44%) Frame = -1 Query: 353 NLEFVLQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEIGTADESPTNMDYSQMSTNDAF 174 N +F L++ GP+ N+D N++ + RR +LE + + ND Sbjct: 439 NNDFELEINPEGPNYINLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLI 498 Query: 173 SQLMN 159 ++L + Sbjct: 499 AELQD 503
>MATK_TRIHY (Q8MCN0) Maturase K (Intron maturase)| Length = 506 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -1 Query: 137 QNCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 +NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 187 RNCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -1 Query: 440 ESLRKYGETVEKCLADYGVDRPTMGDVLWNLEFVLQLQEAGP 315 E+L+K KC+ G DRP+M V LE L L P Sbjct: 748 EALKKIASVACKCVRMRGKDRPSMDKVTTALEHALALLMGSP 789
>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (HEP) Length = 1006 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/78 (25%), Positives = 35/78 (44%) Frame = -1 Query: 446 RPESLRKYGETVEKCLADYGVDRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISELPP 267 R E G T +C + D P + + V L+ P + V ++N +SEL P Sbjct: 398 RQEPASGGGGTCHRCRDEVHFD-PRQRGLTESRVLVGGLRAHVPYILEVQAVNGVSELSP 456 Query: 266 DTRRMGSLEIGTADESPT 213 D + ++ + T+ E P+ Sbjct: 457 DPPQAAAINVSTSHEVPS 474
>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1005 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/78 (25%), Positives = 35/78 (44%) Frame = -1 Query: 446 RPESLRKYGETVEKCLADYGVDRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISELPP 267 R E G T +C + D P + + V L+ P + V ++N +SEL P Sbjct: 397 RQEPASGGGGTCRRCRDEVHFD-PRQRGLTESRVLVGGLRAHVPYILEVQAVNGVSELSP 455 Query: 266 DTRRMGSLEIGTADESPT 213 D + ++ + T+ E P+ Sbjct: 456 DPPQAAAINVSTSHEVPS 473
>MATK_TRIWO (Q8MCL7) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIWI (Q8MCL8) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIRS (Q8MCN8) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFTPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIMI (Q8MCM7) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIGC (Q8MCN2) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIFR (Q8MCN3) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFTSTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIBE (Q5YJV6) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIAO (Q8MCN9) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>CYDB_BACSU (P94365) Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit II) Length = 338 Score = 28.9 bits (63), Expect = 6.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 412 SRSVLRITALTALPWVMSCGIWSLCSSCRRPARTSPM 302 S V+ I ALT LP+V+ IWS +R + PM Sbjct: 300 SLKVMSIAALTLLPFVIGSQIWSYYVFRKRVSHKEPM 336
>MATK_TRISM (Q8MCM3) Maturase K (Intron maturase)| Length = 509 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -1 Query: 134 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 18 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 187 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 225
>POLG_PRSVH (Q01901) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3344 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Frame = +3 Query: 120 DTETILSSSPPFSVHQLREGIV-----GRHL--RVIHVCGAFVCGANLQRAHPSGVRRKF 278 D + + SP + VH++ + + G + R+I+ CGAF+ +++ G F Sbjct: 1200 DLKIVYDFSPKYCVHEVGKAFLLPVKAGAKIASRIINGCGAFI-----RKSAAKGCAYIF 1254 Query: 279 RDLIHAVNIGDVRAGLLQLEHKLQ 350 +DL V++ V + LLQ+ Q Sbjct: 1255 KDLFQFVHVVLVLSILLQIFRSAQ 1278
>DLX5_RAT (P50575) Homeobox protein DLX-5 (DLX-3) (RDLX)| Length = 289 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 188 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDST 358 S S S+P + C SP+SP+ W P+ RS S P P Q+P S+ Sbjct: 206 SPSSSDP------MACNSPQSPAVWEPQGSSRSLS-----HHPHAHPPTSNQSPASS 251
>DLX5_MOUSE (P70396) Homeobox protein DLX-5| Length = 289 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 188 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDST 358 S S S+P + C SP+SP+ W P+ RS S P P Q+P S+ Sbjct: 206 SPSSSDP------MACNSPQSPAVWEPQGSSRSLS-----HHPHAHPPTSNQSPASS 251
>DLX5_HUMAN (P56178) Homeobox protein DLX-5| Length = 289 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 188 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDST 358 S S S+P + C SP+SP+ W P+ RS S P P Q+P S+ Sbjct: 206 SPSSSDP------MACNSPQSPAVWEPQGSSRSLS-----HHPHAHPPTSNQSPASS 251
>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (MEP) Length = 1014 Score = 28.5 bits (62), Expect = 8.2 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -1 Query: 317 PDVSNVDSMNQISELPPDTRRMGSLEIGTADESPT 213 P + V ++N +SEL PD + ++ + T+ E P+ Sbjct: 448 PYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPS 482
>EM13_ECHMU (Q07840) Antigen EM13| Length = 426 Score = 28.5 bits (62), Expect = 8.2 Identities = 22/79 (27%), Positives = 31/79 (39%) Frame = -1 Query: 383 DRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEIGTADESPTNMD 204 D + G L +L+ + GP DS + IS P T GS E T D Sbjct: 279 DGSSGGVTLTSLKTITSPDRGGPIPGTTDSGSNISTSPVHTTAYGSNSYDHGSEGATPSD 338 Query: 203 YSQMSTNDAFSQLMNTEGR 147 Y+ S N A + + + R Sbjct: 339 YTS-SVNGAAAAISKEKQR 356
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1013 Score = 28.5 bits (62), Expect = 8.2 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -1 Query: 317 PDVSNVDSMNQISELPPDTRRMGSLEIGTADESPT 213 P + V ++N +SEL PD + ++ + T+ E P+ Sbjct: 447 PYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPS 481
>CEXY_CLOSR (P40942) Thermostable celloxylanase (EC 3.2.1.4) (EC 3.2.1.8)| Length = 387 Score = 28.5 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Frame = -1 Query: 422 GETVEKCLADYGVDRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISEL-PPDTRRMGS 246 G ++ + DY D P D+L+ E V L E G + V I PP R + S Sbjct: 221 GSDIKLYINDYNTDDPVKRDILY--ELVKNLLEKGVPIDGVGHQTHIDIYNPPVERIIES 278 Query: 245 LE----IGTADESPTNMDYSQMSTND 180 ++ +G D T +D S S ND Sbjct: 279 IKKFAGLG-LDNIITELDMSIYSWND 303
>WNTG_DROME (P09615) Protein wingless precursor (Protein Wnt-1) (dWnt-1)| (Protein int-1) (dInt-1) Length = 468 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +3 Query: 135 LSSSPPFSVHQLREGIVGRHLRV-------IHVCGAFVCGANLQR 248 L SP F LR+GI+G H R + CG CG +R Sbjct: 390 LEPSPSFCEKNLRQGILGTHGRQCNETSLGVDGCGLMCCGRGYRR 434
>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 961 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 7/30 (23%) Frame = +2 Query: 320 RPPAAG-AQTPDSTG------HHPW*GGQR 388 RPP AG AQTP++T H PW GG R Sbjct: 13 RPPGAGGAQTPNATSEGCQIIHPPWEGGIR 42
>GIDB_LEGPL (Q5WSS3) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 300 NIGDVRAGLLQLEHKLQIPQDITHGRAVNAVIRKTLLDSLTVLP 431 +IGD+ L L +K ++T R + ++ K L DSL +LP Sbjct: 22 SIGDLLLDFLLLLNKWNKTYNLTAIRDIETMVSKHLFDSLAILP 65
>GIDB_LEGPH (Q5ZRJ1) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 300 NIGDVRAGLLQLEHKLQIPQDITHGRAVNAVIRKTLLDSLTVLP 431 +IGD+ L L +K ++T R + ++ K L DSL +LP Sbjct: 22 SIGDLLLDFLLLLNKWNKTYNLTAIRDIETMVSKHLFDSLAILP 65
>GIDB_LEGPA (Q5X0Z7) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 300 NIGDVRAGLLQLEHKLQIPQDITHGRAVNAVIRKTLLDSLTVLP 431 +IGD+ L L +K ++T R + ++ K L DSL +LP Sbjct: 22 SIGDLLLDFLLLLNKWNKTYNLTAIRDIETMVSKHLFDSLAILP 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,689,725 Number of Sequences: 219361 Number of extensions: 1606857 Number of successful extensions: 4786 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 4616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4780 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
