Clone Information

BLAST Search Result

Clone Name	rbastl44h01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_475640.1\| Oryza sativa (japonica cultivar-group), predic...	204	2e-49
2	gb\|AC124144.2\| Oryza sativa (japonica cultivar-group) chromosome...	204	2e-49
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	204	2e-49
4	dbj\|AK067124.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	204	2e-49
5	gb\|AC169371.2\| Sorghum bicolor clone SB_BBc0127F08, complete seq...	96	1e-16
6	gb\|BT024128.1\| Zea mays clone EL01N0449F01 mRNA sequence	88	3e-14
7	gb\|AY110775.1\| Zea mays CL12999_1 mRNA sequence	78	3e-11
8	gb\|AC134344.2\| Oryza sativa (japonica cultivar-group) chromosome...	60	7e-06
9	dbj\|AK099713.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
10	emb\|AL136084.11\| Human DNA sequence from clone RP11-92C4 on chro...	50	0.006
11	gb\|AC149545.1\| Populus trichocarpa clone Pop1-71J23, complete se...	48	0.025
12	gb\|AF332888.1\|AF332888 Solanum dulcamara serine/threonine protei...	48	0.025
13	gb\|BT016560.1\| Zea mays clone Contig393 mRNA sequence	42	1.5
14	gb\|AC126549.4\| Mus musculus BAC clone RP24-326I12 from chromosom...	42	1.5
15	emb\|BX537132.8\| Zebrafish DNA sequence from clone RP71-8L21 in l...	42	1.5
16	emb\|AL645726.22\| Mouse DNA sequence from clone RP23-45M23 on chr...	42	1.5
17	ref\|NM_001003999.1\| Danio rerio zgc:100814 (zgc:100814), mRNA	42	1.5
18	dbj\|AP007161.1\| Aspergillus oryzae RIB40 genomic DNA, SC012	42	1.5
19	gb\|BC080225.1\| Danio rerio zgc:100814, mRNA (cDNA clone MGC:1008...	42	1.5
20	gb\|AY107387.1\| Zea mays PCO149313 mRNA sequence	42	1.5
21	gb\|AY104547.1\| Zea mays PCO113533 mRNA sequence	42	1.5
22	gb\|AC159417.1\| Trypanosoma brucei chromosome 8 clone RPCI93-25L8...	40	6.1
23	gb\|AC159407.1\| Trypanosoma brucei chromosome 8 clone RPCI93-12O1...	40	6.1
24	gb\|AF220603.1\| Lycopersicon esculentum VFNT Cherry Pto locus, co...	40	6.1
25	gb\|AF220602.1\| Lycopersicon pimpinellifolium Rio Grande 76R Pto ...	40	6.1
26	gb\|CP000071.1\| Trypanosoma brucei chromosome 8, complete sequence	40	6.1
27	gb\|AC135190.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.1
28	ref\|XM_423449.1\| PREDICTED: Gallus gallus similar to ATP-binding...	40	6.1
29	gb\|AC149542.1\| Populus trichocarpa clone Pop1-2C5, complete sequ...	40	6.1
30	gb\|AY386696.1\| Oryctolagus cuniculus clone 27N5, complete sequence	40	6.1
31	ref\|XM_818508.1\| Trypanosoma brucei TREU927 clone RPCI93-12O16 h...	40	6.1
32	ref\|XM_818816.1\| Trypanosoma brucei TREU927 clone RPCI93-25L8 hy...	40	6.1
33	gb\|AC116575.4\| Mus musculus BAC clone RP23-263I24 from 9, comple...	40	6.1
34	gb\|AC102044.7\| Mus musculus chromosome 9, clone RP23-303N8, comp...	40	6.1
35	gb\|AY316967.1\| Capsicum chinense clone CchiPto9 Pto-like serine/...	40	6.1
36	gb\|CP000284.1\| Methylobacillus flagellatus KT, complete genome	40	6.1
37	gb\|AC026512.6\| Homo sapiens chromosome 15, clone RP11-375D9, com...	40	6.1
38	gb\|AC160825.3\| Xenopus tropicalis clone ISB1-168O21, complete se...	40	6.1
39	gb\|AC159021.2\| Pan troglodytes BAC clone CH251-508C8 from chromo...	40	6.1
40	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
41	gb\|AF318493.1\|AF318493 Lycopersicon hirsutum Pto-like protein ki...	40	6.1
42	gb\|AF318492.1\|AF318492 Lycopersicon hirsutum Pto-like protein ki...	40	6.1
43	gb\|AC157482.2\| Pan troglodytes BAC clone CH251-366D6 from chromo...	40	6.1
44	gb\|U13923.1\|LEU13923 Lycopersicon pimpinellifolium serine/threon...	40	6.1
45	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.1
46	gb\|U59317.1\|LPU59317 Lycopersicon pimpinellifolium serine/threon...	40	6.1
47	gb\|U59318.1\|LEU59318 Lycopersicon esculentum serine/threonine pr...	40	6.1

>ref|XM_475640.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2529

 Score =  204 bits (103), Expect = 2e-49
 Identities = 256/307 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  tcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagta 203
            |||||||||||| ||||| |||||||| ||||||||||   |||| ||||||||||||||
Sbjct: 2529 tcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagta 2470

                                                                        
Query: 204  atccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctggt 263
             ||||||   ||  ||||||| ||||| ||||  |||||||| ||||  |||||   || 
Sbjct: 2469 gtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctgggc 2410

                                                                        
Query: 264  gtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccggc 323
             |  | ||| ||||||||||||||||||||||| ||||  ||||| | ||||||||| ||
Sbjct: 2409 atttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctgc 2350

                                                                        
Query: 324  ctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggtc 383
            ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct: 2349 ctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttc 2290

                                                                        
Query: 384  aacgccgtaatccgcaagacacttctcgacagtctcaccgtacttcctcaacgactcagg 443
             |||||||| ||||| || || ||||| || ||||| ||||||||||||| ||| || ||
Sbjct: 2289 gacgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctgg 2230

                   
Query: 444  cctgatt 450
            |||||||
Sbjct: 2229 cctgatt 2223

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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score =  204 bits (103), Expect = 2e-49
 Identities = 256/307 (83%)
 Strand = Plus / Minus

                                                                         
Query: 144   tcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagta 203
             |||||||||||| ||||| |||||||| ||||||||||   |||| ||||||||||||||
Sbjct: 35483 tcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagta 35424

                                                                         
Query: 204   atccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctggt 263
              ||||||   ||  ||||||| ||||| ||||  |||||||| ||||  |||||   || 
Sbjct: 35423 gtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctgggc 35364

                                                                         
Query: 264   gtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccggc 323
              |  | ||| ||||||||||||||||||||||| ||||  ||||| | ||||||||| ||
Sbjct: 35363 atttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctgc 35304

                                                                         
Query: 324   ctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggtc 383
             ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct: 35303 ctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttc 35244

                                                                         
Query: 384   aacgccgtaatccgcaagacacttctcgacagtctcaccgtacttcctcaacgactcagg 443
              |||||||| ||||| || || ||||| || ||||| ||||||||||||| ||| || ||
Sbjct: 35243 gacgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctgg 35184

                    
Query: 444   cctgatt 450
             |||||||
Sbjct: 35183 cctgatt 35177

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  204 bits (103), Expect = 2e-49
 Identities = 256/307 (83%)
 Strand = Plus / Minus

                                                                           
Query: 144     tcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagta 203
               |||||||||||| ||||| |||||||| ||||||||||   |||| ||||||||||||||
Sbjct: 3613136 tcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagta 3613077

                                                                           
Query: 204     atccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctggt 263
                ||||||   ||  ||||||| ||||| ||||  |||||||| ||||  |||||   || 
Sbjct: 3613076 gtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctgggc 3613017

                                                                           
Query: 264     gtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccggc 323
                |  | ||| ||||||||||||||||||||||| ||||  ||||| | ||||||||| ||
Sbjct: 3613016 atttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctgc 3612957

                                                                           
Query: 324     ctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggtc 383
               ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct: 3612956 ctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttc 3612897

                                                                           
Query: 384     aacgccgtaatccgcaagacacttctcgacagtctcaccgtacttcctcaacgactcagg 443
                |||||||| ||||| || || ||||| || ||||| ||||||||||||| ||| || ||
Sbjct: 3612896 gacgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctgg 3612837

                      
Query: 444     cctgatt 450
               |||||||
Sbjct: 3612836 cctgatt 3612830



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 324      ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 373
                |||||||||||||||| ||||||| || ||||| || |||||||||||||
Sbjct: 14662600 ctcctgcagctggagcgcaaactcgaggttccagagcacatcacccatgg 14662649



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 324      ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 373
                |||||||||||| ||  ||| ||| || ||||||||||||||||||||||
Sbjct: 14651679 ctcctgcagctgtagtgcaacctcgaggttccacaggacatcacccatgg 14651728

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>dbj|AK067124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L04, full
           insert sequence
          Length = 1216

 Score =  204 bits (103), Expect = 2e-49
 Identities = 256/307 (83%)
 Strand = Plus / Minus

                                                                       
Query: 144 tcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagta 203
           |||||||||||| ||||| |||||||| ||||||||||   |||| ||||||||||||||
Sbjct: 997 tcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagta 938

                                                                       
Query: 204 atccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctggt 263
            ||||||   ||  ||||||| ||||| ||||  |||||||| ||||  |||||   || 
Sbjct: 937 gtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctgggc 878

                                                                       
Query: 264 gtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccggc 323
            |  | ||| ||||||||||||||||||||||| ||||  ||||| | ||||||||| ||
Sbjct: 877 atttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctgc 818

                                                                       
Query: 324 ctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggtc 383
           ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct: 817 ctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttc 758

                                                                       
Query: 384 aacgccgtaatccgcaagacacttctcgacagtctcaccgtacttcctcaacgactcagg 443
            |||||||| ||||| || || ||||| || ||||| ||||||||||||| ||| || ||
Sbjct: 757 gacgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctgg 698

                  
Query: 444 cctgatt 450
           |||||||
Sbjct: 697 cctgatt 691

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>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence
          Length = 70712

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                         
Query: 274   agttcagagatctgattcatgctgtcaacattggagacgtccgggccggcctcctgcagc 333
             |||||||||||||||||||| ||||| |  ||||| | ||| || || |||||||| |||
Sbjct: 43879 agttcagagatctgattcatactgtcgatgttggacatgtctggacctgcctcctgtagc 43938

                                                         
Query: 334   tggagcacaaactccagattccacaggacatcacccatggtagg 377
             || |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 43939 tgcagcacaaactccaggttccacagcacatcacccattgtagg 43982

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>gb|BT024128.1| Zea mays clone EL01N0449F01 mRNA sequence
          Length = 1401

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  agttcagagatctgattcatgctgtcaacattggagacgtccgggccggcctcctgcagc 333
            |||||||||||||||||||| ||||  |  ||||| | ||| || || ||||||||||||
Sbjct: 1057 agttcagagatctgattcatactgttgatgttggacatgtctggacctgcctcctgcagc 998

                                                        
Query: 334  tggagcacaaactccagattccacaggacatcacccatggtagg 377
            || |||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 997  tgcagcacaaactccaggttccacagcacatcccccatagtagg 954



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 128  aacaattctgtccagctcacctcccttcagtgttcatcagctgcgagaaggc 179
            ||||||||| ||||| |||||| ||||| |  || || ||||||||||||||
Sbjct: 1203 aacaattctatccagttcaccttccttctgcattgattagctgcgagaaggc 1152

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>gb|AY110775.1| Zea mays CL12999_1 mRNA sequence
          Length = 625

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                       
Query: 274 agttcagagatctgattcatgctgtcaacattggagacgtccgggccggcctcctgcagc 333
           |||||||||||||||||||| ||||  |  ||||| | ||| || || ||||||||||||
Sbjct: 330 agttcagagatctgattcatactgttgatgttggacatgtctggacctgcctcctgcagc 389

                                          
Query: 334 tggagcacaaactccagattccacaggacat 364
           || |||||||||||||| |||||||| ||||
Sbjct: 390 tgcagcacaaactccaggttccacagcacat 420



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 128 aacaattctgtccagctcacctcccttcagtgttcatcagctgcgagaaggc 179
           ||||||||| ||||| |||||| ||||| |  || || ||||||||||||||
Sbjct: 184 aacaattctatccagttcaccttccttctgcattgattagctgcgagaaggc 235

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>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0059K16, complete sequence
          Length = 139615

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 324   ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 373
             |||||||||||||||| ||||||| || ||||| || |||||||||||||
Sbjct: 78894 ctcctgcagctggagcgcaaactcgaggttccagagcacatcacccatgg 78943



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 324   ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 373
             |||||||||||| ||  ||| ||| || ||||||||||||||||||||||
Sbjct: 67973 ctcctgcagctgtagtgcaacctcgaggttccacaggacatcacccatgg 68022

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>dbj|AK099713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084B13, full
            insert sequence
          Length = 4389

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 324  ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 373
            |||||||||||| ||  ||| ||| || ||||||||||||||||||||||
Sbjct: 3947 ctcctgcagctgtagtgcaacctcgaggttccacaggacatcacccatgg 3898

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>emb|AL136084.11| Human DNA sequence from clone RP11-92C4 on chromosome 9q22.33-31.3
              Contains the GALNT12 gene for
              UDP-N-acetyl-alpha-D-galactosamine:polypeptide
              N-acetylgalactosaminyltransferase 12 (GalNAc-T12), the 5'
              end of the COL15A1 gene for collagen type XV, alpha 1, a
              novel gene, a non-metastatic cells 2, protein (NM23B)
              expressed in (NME2) pseudogene and a CpG island, complete
              sequence
          Length = 149930

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 126    gaaacaattctgtccagctcacctc 150
              |||||||||||||||||||||||||
Sbjct: 103585 gaaacaattctgtccagctcacctc 103561

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>gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, complete sequence
          Length = 103543

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 349   agattccacaggacatcacccatggtagggcg 380
             ||||||||||| ||||||||||||| ||||||
Sbjct: 45743 agattccacagcacatcacccatggaagggcg 45712

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>gb|AF332888.1|AF332888 Solanum dulcamara serine/threonine protein kinase pseudogene,
           partial sequence
          Length = 1277

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 344 actccagattccacaggacatcacccat 371
           |||||||||||||||| |||||||||||
Sbjct: 887 actccagattccacagcacatcacccat 860

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>gb|BT016560.1| Zea mays clone Contig393 mRNA sequence
          Length = 747

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 317 ggccggcctcctgcagctgga 337
           |||||||||||||||||||||
Sbjct: 201 ggccggcctcctgcagctgga 181

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>gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosome 13, complete sequence
          Length = 189739

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    cttccttggtgacacagaaac 130
              |||||||||||||||||||||
Sbjct: 110046 cttccttggtgacacagaaac 110066

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>emb|BX537132.8| Zebrafish DNA sequence from clone RP71-8L21 in linkage group 1, complete
              sequence
          Length = 132287

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     aggtcaacatgtttttaccaa 109
              |||||||||||||||||||||
Sbjct: 100024 aggtcaacatgtttttaccaa 100044

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>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete
             sequence
          Length = 231347

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   caacttccttggtgacacaga 127
             |||||||||||||||||||||
Sbjct: 10574 caacttccttggtgacacaga 10594

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>ref|NM_001003999.1| Danio rerio zgc:100814 (zgc:100814), mRNA
          Length = 2070

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   aggtcaacatgtttttaccaa 109
            |||||||||||||||||||||
Sbjct: 1718 aggtcaacatgtttttaccaa 1698

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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 395    ccgcaagacacttctcgacagtctc 419
              ||||||| |||||||||||||||||
Sbjct: 761824 ccgcaagccacttctcgacagtctc 761848

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>gb|BC080225.1| Danio rerio zgc:100814, mRNA (cDNA clone MGC:100814 IMAGE:7136780),
            complete cds
          Length = 2070

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   aggtcaacatgtttttaccaa 109
            |||||||||||||||||||||
Sbjct: 1718 aggtcaacatgtttttaccaa 1698

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>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 343 aactccagattccacaggacatcacccatggtagggcggtc 383
           |||||||| ||||| || ||||||||||| | |||||||||
Sbjct: 839 aactccaggttccagagcacatcacccatcgaagggcggtc 799

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>gb|AY104547.1| Zea mays PCO113533 mRNA sequence
          Length = 927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 317 ggccggcctcctgcagctgga 337
           |||||||||||||||||||||
Sbjct: 282 ggccggcctcctgcagctgga 262

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>gb|AC159417.1| Trypanosoma brucei chromosome 8 clone RPCI93-25L8, complete sequence
          Length = 36265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 336   gagcacaaactccagattccacag 359
             ||||||||||||||| ||||||||
Sbjct: 11444 gagcacaaactccagcttccacag 11467



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 336  gagcacaaactccagattccacag 359
            ||||||||||||||| ||||||||
Sbjct: 1017 gagcacaaactccagcttccacag 1040

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>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence
          Length = 161249

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    gagcacaaactccagattccacag 359
              ||||||||||||||| ||||||||
Sbjct: 159606 gagcacaaactccagcttccacag 159629



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    gagcacaaactccagattccacag 359
              ||||||||||||||| ||||||||
Sbjct: 149179 gagcacaaactccagcttccacag 149202

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>gb|AF220603.1| Lycopersicon esculentum VFNT Cherry Pto locus, complete sequence
          Length = 59202

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 344   actccagattccacaggacatcacccat 371
             ||||||| |||||||| |||||||||||
Sbjct: 44217 actccagtttccacagcacatcacccat 44244



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 344   actccagattccacaggacatcacccat 371
             ||||||| |||||||| |||||||||||
Sbjct: 26361 actccagtttccacagcacatcacccat 26388

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>gb|AF220602.1| Lycopersicon pimpinellifolium Rio Grande 76R Pto locus, complete
             sequence
          Length = 60831

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 344   actccagattccacaggacatcacccat 371
             ||||||| |||||||| |||||||||||
Sbjct: 48503 actccagtttccacagcacatcacccat 48530



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 344   actccagattccacaggacatcacccat 371
             ||||||| |||||||| |||||||||||
Sbjct: 28125 actccagtttccacagcacatcacccat 28152

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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    gagcacaaactccagattccacag 359
              ||||||||||||||| ||||||||
Sbjct: 298326 gagcacaaactccagcttccacag 298349



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    gagcacaaactccagattccacag 359
              ||||||||||||||| ||||||||
Sbjct: 287899 gagcacaaactccagcttccacag 287922

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>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0064H09, complete sequence
          Length = 146742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    agacatctctttctctaggt 92
             ||||||||||||||||||||
Sbjct: 81418 agacatctctttctctaggt 81399

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>ref|XM_423449.1| PREDICTED: Gallus gallus similar to ATP-binding cassette,
           sub-family B, member 6, mitochondrial precursor
           (Mitochondrial ABC transporter 3) (Mt-ABC transporter 3)
           (ABC transporter umat) (LOC425721), partial mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 cctcctgcagctggagcaca 342
           ||||||||||||||||||||
Sbjct: 351 cctcctgcagctggagcaca 370

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>gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequence
          Length = 146274

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 349    agattccacaggacatcacccatggtagggcg 380
              ||||||||||| ||||||||||| | ||||||
Sbjct: 112985 agattccacagcacatcacccatcgaagggcg 113016

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>gb|AY386696.1| Oryctolagus cuniculus clone 27N5, complete sequence
          Length = 146676

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    gggccggcctcctgcagctg 335
              ||||||||||||||||||||
Sbjct: 114412 gggccggcctcctgcagctg 114393



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   gggccggcctcctgcagctg 335
             ||||||||||||||||||||
Sbjct: 76614 gggccggcctcctgcagctg 76595

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>ref|XM_818508.1| Trypanosoma brucei TREU927 clone RPCI93-12O16 hypothetical protein
           (Tb927.8.930) partial mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 336 gagcacaaactccagattccacag 359
           ||||||||||||||| ||||||||
Sbjct: 609 gagcacaaactccagcttccacag 586

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>ref|XM_818816.1| Trypanosoma brucei TREU927 clone RPCI93-25L8 hypothetical protein
           (Tb927.8.950) partial mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 336 gagcacaaactccagattccacag 359
           ||||||||||||||| ||||||||
Sbjct: 609 gagcacaaactccagcttccacag 586

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>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence
          Length = 208678

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   gctggagcacaaactccaga 351
             ||||||||||||||||||||
Sbjct: 41093 gctggagcacaaactccaga 41112

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>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence
          Length = 210347

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   gctggagcacaaactccaga 351
             ||||||||||||||||||||
Sbjct: 13409 gctggagcacaaactccaga 13390

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>gb|AY316967.1| Capsicum chinense clone CchiPto9 Pto-like serine/threonine
           kinase-like mRNA, partial sequence
          Length = 1237

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 actccagattccacaggacatcacccat 371
           |||||||| ||||||| |||||||||||
Sbjct: 886 actccagactccacagtacatcacccat 859

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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     agaaggcatcgttggtcgac 192
               ||||||||||||||||||||
Sbjct: 1780378 agaaggcatcgttggtcgac 1780359

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>gb|AC026512.6| Homo sapiens chromosome 15, clone RP11-375D9, complete sequence
          Length = 90707

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   gacatcacccatggtagggc 379
             ||||||||||||||||||||
Sbjct: 41732 gacatcacccatggtagggc 41751

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>gb|AC160825.3| Xenopus tropicalis clone ISB1-168O21, complete sequence
          Length = 102150

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 94   aacatgtttttaccaacttccttg 117
            |||||||||||||||| |||||||
Sbjct: 8200 aacatgtttttaccaaattccttg 8223

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>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete
              sequence
          Length = 240827

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 128    aacaattctgtccagctcacctcc 151
              |||||||||||| |||||||||||
Sbjct: 156254 aacaattctgtctagctcacctcc 156231

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 73       agacatctctttctctaggt 92
                ||||||||||||||||||||
Sbjct: 26776788 agacatctctttctctaggt 26776769

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>gb|AF318493.1|AF318493 Lycopersicon hirsutum Pto-like protein kinase D (LhirPtoD) mRNA,
           complete cds
          Length = 972

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 actccagattccacaggacatcacccat 371
           ||||||| |||||||| |||||||||||
Sbjct: 925 actccagtttccacagcacatcacccat 898

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>gb|AF318492.1|AF318492 Lycopersicon hirsutum Pto-like protein kinase B (LhirPtoB) mRNA,
           complete cds
          Length = 963

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 actccagattccacaggacatcacccat 371
           ||||||| |||||||| |||||||||||
Sbjct: 916 actccagtttccacagcacatcacccat 889

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>gb|AC157482.2| Pan troglodytes BAC clone CH251-366D6 from chromosome unknown, complete
              sequence
          Length = 168325

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 128    aacaattctgtccagctcacctcc 151
              |||||||||||| |||||||||||
Sbjct: 130140 aacaattctgtctagctcacctcc 130163

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>gb|U13923.1|LEU13923 Lycopersicon pimpinellifolium serine/threonine protein kinase (Fen)
           mRNA, complete cds
          Length = 957

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 actccagattccacaggacatcacccat 371
           ||||||| |||||||| |||||||||||
Sbjct: 910 actccagtttccacagcacatcacccat 883

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 73       agacatctctttctctaggt 92
                ||||||||||||||||||||
Sbjct: 27104023 agacatctctttctctaggt 27104004

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>gb|U59317.1|LPU59317 Lycopersicon pimpinellifolium serine/threonine protein kinase Fen
            (Fen) gene, complete cds
          Length = 1481

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 344  actccagattccacaggacatcacccat 371
            ||||||| |||||||| |||||||||||
Sbjct: 1167 actccagtttccacagcacatcacccat 1140

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>gb|U59318.1|LEU59318 Lycopersicon esculentum serine/threonine protein kinase fen (fen)
            gene, complete cds
          Length = 1478

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 344  actccagattccacaggacatcacccat 371
            ||||||| |||||||| |||||||||||
Sbjct: 1175 actccagtttccacagcacatcacccat 1148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,084,685
Number of Sequences: 3902068
Number of extensions: 4084685
Number of successful extensions: 74529
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74357
Number of HSP's gapped (non-prelim): 170
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result