ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44g04 |
|---|---|
| Clone Library Name | barley_pub |
>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated protein| 130) (SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130 kDa subunit) (STAF130) Length = 1217 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 403 DELVRTPGEILKKLEDIRNK 344 +EL RTP E+ KKLEDIR + Sbjct: 1195 EELDRTPPEVSKKLEDIRTR 1214
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -2 Query: 311 SDCGMRLSSPHRCKIFISSPSTAVVWRFSFDTTQHSIIHESTEWTGPTTHNRRI--WCT 141 S CG+ H+CKI S + + R +F+ +I +T + + RI WCT Sbjct: 543 SPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVNISSAATSESVVVMLDGRIVGWCT 601
>RIR1_CHLPN (Q9Z6S5) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 1044 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +2 Query: 302 HSQIHSCYSMTLDDFVSDVFQLLQD 376 HSQ+ SCY T+ D +S +++++ D Sbjct: 450 HSQLSSCYLSTVKDDLSHIYKVISD 474
>PHF20_MOUSE (Q8BLG0) PHD finger protein 20 (Hepatocellular carcinoma-associated| antigen 58 homolog) Length = 1010 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 82 NCPFLLESTRQTEPVSTMSTVHQIRRLWVVGPVHSVD 192 NC + E+T +TEPVS ++ V ++ + V + VD Sbjct: 403 NCKSMGENTMKTEPVSPLAEVQEVSTVEVPNTLKKVD 439
>GDA1_KLULA (Q9HEM6) Guanosine-diphosphatase (EC 3.6.1.42) (GDPase)| Length = 522 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = -2 Query: 371 EEAGRHQKQNHLGSSNSMNESDCGMRLSSPHRCKIFISSPSTAV---VWRFSFDTTQHSI 201 + A H QN SNS+++S C + H+ + I + ST V+ F T ++ Sbjct: 69 QTAKDHTSQNLESGSNSLSKSQC----TEGHKYVVMIDAGSTGSRVHVYEFDVCTQPPTL 124 Query: 200 IHESTEWTGP 171 I+E+ E P Sbjct: 125 INETFEMLKP 134
>PGTB_SALTY (P37433) Phosphoglycerate transport system sensor protein pgtB (EC| 2.7.13.3) Length = 668 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 338 DDFVSDVFQLLQDFTWSSDKLI 403 DDF +++ L+QDFTW L+ Sbjct: 156 DDFTTELNSLVQDFTWQQGTLL 177
>ZN131_PONPY (Q5RAU9) Zinc finger protein 131| Length = 589 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/71 (25%), Positives = 39/71 (54%) Frame = +1 Query: 97 LESTRQTEPVSTMSTVHQIRRLWVVGPVHSVDS*IMECCVVSKEKRHTTAVLGEEINILH 276 +E+ QTEPV++M+ + Q+ ++ V+ P+ V ++ V+ E+ H + G +++ H Sbjct: 423 VETRVQTEPVTSMTIIEQVGKVHVL-PLLQVQ---VDSAQVTVEQVHPDLLQGSQVHDSH 478 Query: 277 R*GLDSRIPQS 309 L ++ S Sbjct: 479 MSELPEQVQVS 489
>RIR1_CHLMU (Q9PL93) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 1047 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/25 (36%), Positives = 18/25 (72%) Frame = +2 Query: 302 HSQIHSCYSMTLDDFVSDVFQLLQD 376 HSQ+ SCY T+ D + ++++++ D Sbjct: 452 HSQLSSCYLSTVQDDLVNIYKVISD 476
>CEMA_MARPO (P12211) Chloroplast envelope membrane protein| Length = 434 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = +2 Query: 221 QKKNATQRLYWVRR*IFYTD-----EDLTVAFHSQIHSCYSMTLDDFVSDVFQLLQDFTW 385 +K + L+W+ + + Y+ +DLT H Q + +D + V LL D W Sbjct: 262 KKLQEIEELFWLDKVMTYSSNKIQLQDLTKEIHQQTIELVQIYNNDSIKIVLHLLTDLIW 321
>Y2081_STRA5 (Q8DWY0) UPF0246 protein SAG2081| Length = 243 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -2 Query: 299 MRLSSPHRC----KIFISSPSTAVVWRFSFDTTQHS 204 M L SPHR KI I++ S V WR ++DT S Sbjct: 115 MTLISPHRLDFNTKIKINNNSLKVFWRENYDTFMQS 150
>Y2036_STRA3 (Q8E2T1) UPF0246 protein gbs2036| Length = 243 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -2 Query: 299 MRLSSPHRC----KIFISSPSTAVVWRFSFDTTQHS 204 M L SPHR KI I++ S V WR ++DT S Sbjct: 115 MTLISPHRLDFNTKIKINNNSLKVFWRENYDTFMQS 150
>RIR1_CHLTR (O84834) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 1047 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/25 (36%), Positives = 18/25 (72%) Frame = +2 Query: 302 HSQIHSCYSMTLDDFVSDVFQLLQD 376 HSQ+ SCY T+ D + ++++++ D Sbjct: 452 HSQLSSCYLSTVQDNLVNIYKVIAD 476
>POLN_ONNVS (O90368) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1. Length = 2513 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = -3 Query: 238 CGVFLLTQHSIP*FMSQRSGQDPQPIIVGSGVPXXXXXLAQFAL*IQARTDN*MAVP 68 C LL H++P +S R+ + II +P AQF +Q+ TD + VP Sbjct: 1638 CSKALLFDHNVPSRVSPRTYRPADEIIQTPQIPTEACQDAQF---VQSITDEAVPVP 1691
>RIR1_AQUAE (O66503) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 801 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 12/86 (13%) Frame = +2 Query: 140 RYTRSDDYGLWVLSTPLTHELWNAVLCQKKNATQRLYWVRR*IFY---TDEDLTVAF--- 301 RY D+ G + + L L + +RL W ++ FY ++ +TVA Sbjct: 165 RYLVRDEEGRVIELPQEMYMLIAMTLAVPEKPEERLKWAKK--FYDVLSEHKVTVATPTL 222 Query: 302 ------HSQIHSCYSMTLDDFVSDVF 361 +Q+ SC+ +T+DD + D+F Sbjct: 223 MNARRPFTQLSSCFVLTVDDDLFDIF 248
>RPN2_MOUSE (Q9DBG6) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 63 kDa subunit precursor (EC 2.4.1.119) (Ribophorin II) (RPN-II) Length = 631 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%) Frame = -2 Query: 269 IFISSPSTAVVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 129 +F++ P V++F DT++ I +S T T N +W D+V Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502
>RIB2_RAT (P25235) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 63 kDa subunit precursor (EC 2.4.1.119) (Ribophorin II) (RPN-II) Length = 631 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%) Frame = -2 Query: 269 IFISSPSTAVVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 129 +F++ P V++F DT++ I +S T T N +W D+V Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502
>RIB2_HUMAN (P04844) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 63 kDa subunit precursor (EC 2.4.1.119) (Ribophorin II) (RPN-II) (RIBIIR) Length = 631 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%) Frame = -2 Query: 269 IFISSPSTAVVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 129 +F++ P V++F DT++ I +S T T N +W D+V Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502
>TL15_ARATH (O22160) Thylakoid lumenal 15 kDa protein, chloroplast precursor| (p15) Length = 224 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -2 Query: 329 SNSMNESDCGMRLSSPHRCKIFISSPSTAVVWRFSFDTTQHSI 201 S S S C +R S K ++SP +VVW + ++ S+ Sbjct: 23 SPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEVSKRSL 65
>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding| cassette sub-family C member 6) Length = 1498 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/68 (23%), Positives = 28/68 (41%) Frame = +2 Query: 2 HQTSSVTSGQITVVETGTERLLWYSHLIVRSCLNLQGKLSQCQQCQRYTRSDDYGLWVLS 181 H ++ + ++ T+ L W +VRS +L+ + ++ Q Y R W L Sbjct: 1191 HLSAGLVGFSVSAALQVTQTLQW----VVRSWTDLENSMVAVERVQDYARIPKEAPWRLP 1246 Query: 182 TPLTHELW 205 T LW Sbjct: 1247 TCAAQPLW 1254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,873,905 Number of Sequences: 219361 Number of extensions: 1194036 Number of successful extensions: 2936 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2936 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
