>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated|
           protein 10.10) (High sulfur keratin-associated protein
           10.10) (Keratin-associated protein 18-10)
           (Keratin-associated protein 18.10)
          Length = 251

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 344 ERRARACAGASCLPTHCTCDQWSSRCCTIRGIC*QSKCFLKQVSRANVA 198
           E     C  +SC PT CT       CC    +C +S C++   S A+ +
Sbjct: 121 ESSPSCCQQSSCQPTCCTSSPCQQACCV--PVCSKSVCYVPVCSGASTS 167

>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -3

Query: 326 CAGASCLPTHCTCDQWSSRCCTIRGIC*QSKC 231
           C    C PT CTC      CC     C Q  C
Sbjct: 73  CPMKPCCPTKCTCCPKKCTCCPQPTCCVQPTC 104

>HEPA_VZVD (P09300) DNA helicase/primase complex-associated protein|
          Length = 771

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 224 SKNICSANIYPVWYNSGSSTDHRYNELANMMPRRKLSLAAPNF 352
           S +IC+A+IY  W  SG  T +  + L  ++ +       P F
Sbjct: 12  SGHICAASIYTSWTQSGQLTQNGLSVLYYLLCKNSCGKYVPKF 54

>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4134

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 117  Y*SRRLHPM-LWQTMATSPCHVKDKLQNSYIC 209
            Y   ++ PM +W  + T+ C   DKLQ  ++C
Sbjct: 3175 YPDAKMDPMNIWDDIITNRCFFLDKLQEKFLC 3206

>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-
          Length = 6629

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 99   SCGLRVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSAN 218
            +CG++ Y  R L   +    AT+  H K +  N   C AN
Sbjct: 1354 NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGAN 1393

>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-P
          Length = 6629

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 99   SCGLRVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSAN 218
            +CG++ Y  R L   +    AT+  H K +  N   C AN
Sbjct: 1354 NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGAN 1393

>VE6_HPV61 (Q80948) Protein E6|
          Length = 146

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 299 HCTCDQWSSRCCTIRGIC 246
           H    QW+ RCC  RG C
Sbjct: 123 HYIAGQWTGRCCQCRGPC 140

>DCP2_YEAST (P53550) mRNA decapping enzyme 2 (EC 3.-.-.-) (Protein PSU1)|
          Length = 970

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +2

Query: 95   NQLRPKGLLK*KVTSYAVADDGYISMSCQRQITKQLHLLC*LVSKNICSANIYPV--WYN 268
            N L+PK L           +DGY ++S +    + L++L    + +  + N+Y    +  
Sbjct: 874  NYLKPKPL-----------NDGYENISNKDSSHELLNILHGNKNSSAFNNNVYATDGYSL 922

Query: 269  SGSSTDHRYNELANMMPRRKLSLAAPNF 352
            +  + ++  N+L NM+  R  ++  PNF
Sbjct: 923  ASDNNENSSNKLLNMLQNRSSAINEPNF 950

>KCY_DEIRA (Q9RRE9) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine|
           monophosphate kinase) (CMP kinase)
          Length = 206

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 349 VWSGERELAPGHH 311
           VWSGER+L PG H
Sbjct: 75  VWSGERDLTPGLH 87

>PAND_METCA (Q605G8) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 126

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 169 GDVAIVCHSIGCNXXXXXXLRPQLVSSED*KQSVIHQH 56
           GD+ I+C  +G N       RP LV  ++  Q     H
Sbjct: 82  GDIVIICAYVGLNQAELAAYRPNLVYVDENNQITRTSH 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,096,811
Number of Sequences: 219361
Number of extensions: 912460
Number of successful extensions: 2395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)