Clone Name | rbastl44f10 |
---|---|
Clone Library Name | barley_pub |
>YL142_MIMIV (Q5UR11) Hypothetical protein L142 precursor| Length = 490 Score = 27.7 bits (60), Expect = 9.0 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = -3 Query: 81 SFHVTWKLYKDLD 43 ++H+TW LYKDLD Sbjct: 451 AYHLTWDLYKDLD 463
>CSTF1_RAT (Q5BJQ6) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = -3 Query: 123 NHPVVITKYEHL----CISFHVT 67 NHPV+ T Y+H+ C++FH T Sbjct: 162 NHPVIRTLYDHVDEVTCLAFHPT 184
>CSTF1_PONPY (Q5R8K2) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = -3 Query: 123 NHPVVITKYEHL----CISFHVT 67 NHPV+ T Y+H+ C++FH T Sbjct: 162 NHPVIRTLYDHVDEVTCLAFHPT 184
>CSTF1_MOUSE (Q99LC2) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = -3 Query: 123 NHPVVITKYEHL----CISFHVT 67 NHPV+ T Y+H+ C++FH T Sbjct: 162 NHPVIRTLYDHVDEVTCLAFHPT 184
>CSTF1_HUMAN (Q05048) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = -3 Query: 123 NHPVVITKYEHL----CISFHVT 67 NHPV+ T Y+H+ C++FH T Sbjct: 162 NHPVIRTLYDHVDEVTCLAFHPT 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,788,732 Number of Sequences: 219361 Number of extensions: 334123 Number of successful extensions: 662 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 662 length of database: 80,573,946 effective HSP length: 28 effective length of database: 74,431,838 effective search space used: 1786364112 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)