ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_456785.1| Debaryomyces hansenii CBS767 hypothetical prote... 46 0.031
2emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 46 0.031
3gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Ca... 42 0.49
4gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome... 40 1.9
5gb|AC127353.3| Mus musculus BAC clone RP23-81P21 from chromosome... 40 1.9
6gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosom... 40 1.9
7gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosom... 40 1.9
8gb|U51033.2|YSCP9513 Saccharomyces cerevisiae chromosome XVI cos... 40 1.9
9emb|CR627489.6| Zebrafish DNA sequence from clone DKEY-116O23 in... 40 1.9
10gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, comple... 40 1.9
11gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, compl... 40 1.9
12gb|AC101834.8| Mus musculus chromosome 15, clone RP24-497O17, co... 38 7.6
13ref|XM_707577.1| Candida albicans SC5314 aspartate transcarbamyl... 38 7.6
14ref|XM_707557.1| Candida albicans SC5314 aspartate transcarbamyl... 38 7.6
15ref|XM_454643.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E15444g ... 38 7.6
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.6
17gb|AC113030.5| Mus musculus chromosome 6, clone RP23-211L5, comp... 38 7.6
18emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 38 7.6
19emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 7.6
20gb|AC163670.3| Mus musculus BAC clone RP23-31C13 from chromosome... 38 7.6
21gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genom... 38 7.6
22gb|AC159979.5| Mus musculus chromosome 15, clone RP24-262D18, co... 38 7.6
23emb|BX530022.5| Zebrafish DNA sequence from clone DKEY-29A22 in ... 38 7.6
24gb|AC006061.1| Homo sapiens X BAC GSHB-19O24 (Genome Systems Hum... 38 7.6
25dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 38 7.6
26gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 38 7.6
27gb|AC158464.2| Medicago truncatula chromosome 2 BAC clone mth2-1... 38 7.6
28gb|AF064858.2|AF064858 Homo sapiens chromosome 21 clone BAC 28F9... 38 7.6
29emb|BX547995.5| Mouse DNA sequence from clone RP23-356H23 on chr... 38 7.6
30dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
31emb|BX511264.7| Zebrafish DNA sequence from clone DKEY-31O6 in l... 38 7.6
32gb|AC104799.4| Homo sapiens BAC clone RP11-345F13 from 2, comple... 38 7.6
33gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D... 38 7.6
34gb|AC153614.5| Mus musculus 6 BAC RP23-344N8 (Roswell Park Cance... 38 7.6
35emb|CR381687.17| Zebrafish DNA sequence from clone DKEY-283C16 i... 38 7.6
36dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone... 38 7.6
37gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosom... 38 7.6

>ref|XM_456785.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A10736g)
            partial mRNA
          Length = 6636

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 97   atatttggtaataacaactggat 119
            |||||||||||||||||||||||
Sbjct: 3510 atatttggtaataacaactggat 3488



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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 97     atatttggtaataacaactggat 119
              |||||||||||||||||||||||
Sbjct: 882559 atatttggtaataacaactggat 882537



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>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 109003

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    tcatatttggtaataacaact 115
             |||||||||||||||||||||
Sbjct: 98915 tcatatttggtaataacaact 98935



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>gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome 16, complete sequence
          Length = 174804

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     gcatagatgttcatatttgg 104
              ||||||||||||||||||||
Sbjct: 117779 gcatagatgttcatatttgg 117798



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>gb|AC127353.3| Mus musculus BAC clone RP23-81P21 from chromosome 18, complete sequence
          Length = 225658

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    tctttgtacaatttccaggt 69
             ||||||||||||||||||||
Sbjct: 50132 tctttgtacaatttccaggt 50151



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>gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosome 18, complete
            sequence
          Length = 167394

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   tctttgtacaatttccaggt 69
            ||||||||||||||||||||
Sbjct: 8385 tctttgtacaatttccaggt 8366



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>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete sequence
          Length = 175171

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     tgtacaatttccaggtcaca 73
              ||||||||||||||||||||
Sbjct: 171680 tgtacaatttccaggtcaca 171699



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>gb|U51033.2|YSCP9513 Saccharomyces cerevisiae chromosome XVI cosmid 9513
          Length = 44455

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tcatgtgaggttccttttgt 152
             ||||||||||||||||||||
Sbjct: 29995 tcatgtgaggttccttttgt 29976



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>emb|CR627489.6| Zebrafish DNA sequence from clone DKEY-116O23 in linkage group 16,
             complete sequence
          Length = 49539

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    ttaagtttgatcaaacatccaaat 50
             |||||||| |||||||||||||||
Sbjct: 12727 ttaagtttaatcaaacatccaaat 12704



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>gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, complete sequence
          Length = 148858

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     gcatagatgttcatatttgg 104
              ||||||||||||||||||||
Sbjct: 104826 gcatagatgttcatatttgg 104807



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>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence
          Length = 190527

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    tgtacaatttccaggtcaca 73
             ||||||||||||||||||||
Sbjct: 58064 tgtacaatttccaggtcaca 58045



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>gb|AC101834.8| Mus musculus chromosome 15, clone RP24-497O17, complete sequence
          Length = 135427

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gcatagatgttcatatttg 103
             |||||||||||||||||||
Sbjct: 55051 gcatagatgttcatatttg 55033



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>ref|XM_707577.1| Candida albicans SC5314 aspartate transcarbamylase (CaO19.9896), mRNA
          Length = 6651

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 97   atatttggtaataacaactggat 119
            |||||||||||| ||||||||||
Sbjct: 3540 atatttggtaatgacaactggat 3518



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>ref|XM_707557.1| Candida albicans SC5314 aspartate transcarbamylase (CaO19.2360), mRNA
          Length = 6651

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 97   atatttggtaataacaactggat 119
            |||||||||||| ||||||||||
Sbjct: 3540 atatttggtaatgacaactggat 3518



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>ref|XM_454643.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E15444g predicted mRNA
          Length = 6687

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 97   atatttggtaataacaactggat 119
            ||||||||| |||||||||||||
Sbjct: 3519 atatttggtgataacaactggat 3497



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 21       tgatgtttaagtttgatca 39
                |||||||||||||||||||
Sbjct: 19536174 tgatgtttaagtttgatca 19536156



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>gb|AC113030.5| Mus musculus chromosome 6, clone RP23-211L5, complete sequence
          Length = 187655

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    atgtttaagtttgatcaaa 41
             |||||||||||||||||||
Sbjct: 28586 atgtttaagtttgatcaaa 28568



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>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078
          Length = 340000

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 56     tacaatttccaggtcacatggaa 78
              |||||||||| ||||||||||||
Sbjct: 233534 tacaatttccgggtcacatggaa 233556



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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 97      atatttggtaataacaactggat 119
               ||||||||| |||||||||||||
Sbjct: 1374259 atatttggtgataacaactggat 1374237



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>gb|AC163670.3| Mus musculus BAC clone RP23-31C13 from chromosome 12, complete sequence
          Length = 214651

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 44     tccaaatctttgtacaatttcca 66
              |||||||||||||||| ||||||
Sbjct: 158855 tccaaatctttgtacattttcca 158833



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>gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genomic sequence, complete
             sequence
          Length = 145155

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tgatgtttaagtttgatca 39
             |||||||||||||||||||
Sbjct: 16863 tgatgtttaagtttgatca 16881



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>gb|AC159979.5| Mus musculus chromosome 15, clone RP24-262D18, complete sequence
          Length = 166004

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 85   gcatagatgttcatatttg 103
            |||||||||||||||||||
Sbjct: 7684 gcatagatgttcatatttg 7702



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>emb|BX530022.5| Zebrafish DNA sequence from clone DKEY-29A22 in linkage group 21,
             complete sequence
          Length = 139415

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 92    tgttcatatttggtaataacaac 114
             |||||||||||||||| ||||||
Sbjct: 46383 tgttcatatttggtaaaaacaac 46361



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>gb|AC006061.1| Homo sapiens X BAC GSHB-19O24 (Genome Systems Human BAC Library)
             complete sequence
          Length = 98056

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    ttagatgatgtttaagttt 34
             |||||||||||||||||||
Sbjct: 11295 ttagatgatgtttaagttt 11277



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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    ctggatggttcagttgcgc 132
              |||||||||||||||||||
Sbjct: 387846 ctggatggttcagttgcgc 387864



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>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    atgttcatatttggtaataacaa 113
             |||||||||||||||||| ||||
Sbjct: 70758 atgttcatatttggtaattacaa 70736



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>gb|AC158464.2| Medicago truncatula chromosome 2 BAC clone mth2-145m24, complete
             sequence
          Length = 89051

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    tttagatgatgtttaagtt 33
             |||||||||||||||||||
Sbjct: 24234 tttagatgatgtttaagtt 24252



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>gb|AF064858.2|AF064858 Homo sapiens chromosome 21 clone BAC 28F9, map 21q22.3, complete sequence
          Length = 194769

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 56     tacaatttccaggtcacatggaa 78
              |||||||||| ||||||||||||
Sbjct: 120818 tacaatttccgggtcacatggaa 120840



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>emb|BX547995.5| Mouse DNA sequence from clone RP23-356H23 on chromosome X, complete
             sequence
          Length = 212590

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 135   atgtgaggttccttttgta 153
             |||||||||||||||||||
Sbjct: 32149 atgtgaggttccttttgta 32167



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 21       tgatgtttaagtttgatca 39
                |||||||||||||||||||
Sbjct: 19529201 tgatgtttaagtttgatca 19529183



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>emb|BX511264.7| Zebrafish DNA sequence from clone DKEY-31O6 in linkage group 21,
             complete sequence
          Length = 145605

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 92    tgttcatatttggtaataacaac 114
             |||||||||||||||| ||||||
Sbjct: 56595 tgttcatatttggtaaaaacaac 56573



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>gb|AC104799.4| Homo sapiens BAC clone RP11-345F13 from 2, complete sequence
          Length = 159933

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    tttagatgatgtttaagtt 33
             |||||||||||||||||||
Sbjct: 17100 tttagatgatgtttaagtt 17118



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>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    atgttcatatttggtaataacaa 113
             |||||||||||||||||| ||||
Sbjct: 12663 atgttcatatttggtaattacaa 12641



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>gb|AC153614.5| Mus musculus 6 BAC RP23-344N8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205813

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     atgtttaagtttgatcaaa 41
              |||||||||||||||||||
Sbjct: 204959 atgtttaagtttgatcaaa 204941



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>emb|CR381687.17| Zebrafish DNA sequence from clone DKEY-283C16 in linkage group 11,
              complete sequence
          Length = 202525

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 92     tgttcatatttggtaataacaac 114
              |||||||||||||||| ||||||
Sbjct: 140462 tgttcatatttggtaaaaacaac 140440



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>dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT12N11, TM0066,
             complete sequence
          Length = 79585

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    ttaagtttgatcaaacatc 45
             |||||||||||||||||||
Sbjct: 62342 ttaagtttgatcaaacatc 62324



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>gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosome 12, complete
             sequence
          Length = 174961

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 44    tccaaatctttgtacaatttcca 66
             |||||||||||||||| ||||||
Sbjct: 26393 tccaaatctttgtacattttcca 26371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,470,706
Number of Sequences: 3902068
Number of extensions: 1470706
Number of successful extensions: 106926
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106758
Number of HSP's gapped (non-prelim): 168
length of query: 158
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 136
effective length of database: 17,147,199,772
effective search space: 2332019168992
effective search space used: 2332019168992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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