Clone Name | rbastl44f10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_456785.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A10736g) partial mRNA Length = 6636 Score = 46.1 bits (23), Expect = 0.031 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 atatttggtaataacaactggat 119 ||||||||||||||||||||||| Sbjct: 3510 atatttggtaataacaactggat 3488
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 46.1 bits (23), Expect = 0.031 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 atatttggtaataacaactggat 119 ||||||||||||||||||||||| Sbjct: 882559 atatttggtaataacaactggat 882537
>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 109003 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 tcatatttggtaataacaact 115 ||||||||||||||||||||| Sbjct: 98915 tcatatttggtaataacaact 98935
>gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome 16, complete sequence Length = 174804 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gcatagatgttcatatttgg 104 |||||||||||||||||||| Sbjct: 117779 gcatagatgttcatatttgg 117798
>gb|AC127353.3| Mus musculus BAC clone RP23-81P21 from chromosome 18, complete sequence Length = 225658 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tctttgtacaatttccaggt 69 |||||||||||||||||||| Sbjct: 50132 tctttgtacaatttccaggt 50151
>gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosome 18, complete sequence Length = 167394 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 tctttgtacaatttccaggt 69 |||||||||||||||||||| Sbjct: 8385 tctttgtacaatttccaggt 8366
>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete sequence Length = 175171 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tgtacaatttccaggtcaca 73 |||||||||||||||||||| Sbjct: 171680 tgtacaatttccaggtcaca 171699
>gb|U51033.2|YSCP9513 Saccharomyces cerevisiae chromosome XVI cosmid 9513 Length = 44455 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcatgtgaggttccttttgt 152 |||||||||||||||||||| Sbjct: 29995 tcatgtgaggttccttttgt 29976
>emb|CR627489.6| Zebrafish DNA sequence from clone DKEY-116O23 in linkage group 16, complete sequence Length = 49539 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ttaagtttgatcaaacatccaaat 50 |||||||| ||||||||||||||| Sbjct: 12727 ttaagtttaatcaaacatccaaat 12704
>gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, complete sequence Length = 148858 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gcatagatgttcatatttgg 104 |||||||||||||||||||| Sbjct: 104826 gcatagatgttcatatttgg 104807
>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence Length = 190527 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tgtacaatttccaggtcaca 73 |||||||||||||||||||| Sbjct: 58064 tgtacaatttccaggtcaca 58045
>gb|AC101834.8| Mus musculus chromosome 15, clone RP24-497O17, complete sequence Length = 135427 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 gcatagatgttcatatttg 103 ||||||||||||||||||| Sbjct: 55051 gcatagatgttcatatttg 55033
>ref|XM_707577.1| Candida albicans SC5314 aspartate transcarbamylase (CaO19.9896), mRNA Length = 6651 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 97 atatttggtaataacaactggat 119 |||||||||||| |||||||||| Sbjct: 3540 atatttggtaatgacaactggat 3518
>ref|XM_707557.1| Candida albicans SC5314 aspartate transcarbamylase (CaO19.2360), mRNA Length = 6651 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 97 atatttggtaataacaactggat 119 |||||||||||| |||||||||| Sbjct: 3540 atatttggtaatgacaactggat 3518
>ref|XM_454643.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E15444g predicted mRNA Length = 6687 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 97 atatttggtaataacaactggat 119 ||||||||| ||||||||||||| Sbjct: 3519 atatttggtgataacaactggat 3497
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 tgatgtttaagtttgatca 39 ||||||||||||||||||| Sbjct: 19536174 tgatgtttaagtttgatca 19536156
>gb|AC113030.5| Mus musculus chromosome 6, clone RP23-211L5, complete sequence Length = 187655 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 atgtttaagtttgatcaaa 41 ||||||||||||||||||| Sbjct: 28586 atgtttaagtttgatcaaa 28568
>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 Length = 340000 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 56 tacaatttccaggtcacatggaa 78 |||||||||| |||||||||||| Sbjct: 233534 tacaatttccgggtcacatggaa 233556
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 97 atatttggtaataacaactggat 119 ||||||||| ||||||||||||| Sbjct: 1374259 atatttggtgataacaactggat 1374237
>gb|AC163670.3| Mus musculus BAC clone RP23-31C13 from chromosome 12, complete sequence Length = 214651 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 44 tccaaatctttgtacaatttcca 66 |||||||||||||||| |||||| Sbjct: 158855 tccaaatctttgtacattttcca 158833
>gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genomic sequence, complete sequence Length = 145155 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 tgatgtttaagtttgatca 39 ||||||||||||||||||| Sbjct: 16863 tgatgtttaagtttgatca 16881
>gb|AC159979.5| Mus musculus chromosome 15, clone RP24-262D18, complete sequence Length = 166004 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gcatagatgttcatatttg 103 ||||||||||||||||||| Sbjct: 7684 gcatagatgttcatatttg 7702
>emb|BX530022.5| Zebrafish DNA sequence from clone DKEY-29A22 in linkage group 21, complete sequence Length = 139415 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 92 tgttcatatttggtaataacaac 114 |||||||||||||||| |||||| Sbjct: 46383 tgttcatatttggtaaaaacaac 46361
>gb|AC006061.1| Homo sapiens X BAC GSHB-19O24 (Genome Systems Human BAC Library) complete sequence Length = 98056 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 ttagatgatgtttaagttt 34 ||||||||||||||||||| Sbjct: 11295 ttagatgatgtttaagttt 11277
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 ctggatggttcagttgcgc 132 ||||||||||||||||||| Sbjct: 387846 ctggatggttcagttgcgc 387864
>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence Length = 133862 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 91 atgttcatatttggtaataacaa 113 |||||||||||||||||| |||| Sbjct: 70758 atgttcatatttggtaattacaa 70736
>gb|AC158464.2| Medicago truncatula chromosome 2 BAC clone mth2-145m24, complete sequence Length = 89051 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tttagatgatgtttaagtt 33 ||||||||||||||||||| Sbjct: 24234 tttagatgatgtttaagtt 24252
>gb|AF064858.2|AF064858 Homo sapiens chromosome 21 clone BAC 28F9, map 21q22.3, complete sequence Length = 194769 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 56 tacaatttccaggtcacatggaa 78 |||||||||| |||||||||||| Sbjct: 120818 tacaatttccgggtcacatggaa 120840
>emb|BX547995.5| Mouse DNA sequence from clone RP23-356H23 on chromosome X, complete sequence Length = 212590 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 atgtgaggttccttttgta 153 ||||||||||||||||||| Sbjct: 32149 atgtgaggttccttttgta 32167
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 tgatgtttaagtttgatca 39 ||||||||||||||||||| Sbjct: 19529201 tgatgtttaagtttgatca 19529183
>emb|BX511264.7| Zebrafish DNA sequence from clone DKEY-31O6 in linkage group 21, complete sequence Length = 145605 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 92 tgttcatatttggtaataacaac 114 |||||||||||||||| |||||| Sbjct: 56595 tgttcatatttggtaaaaacaac 56573
>gb|AC104799.4| Homo sapiens BAC clone RP11-345F13 from 2, complete sequence Length = 159933 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tttagatgatgtttaagtt 33 ||||||||||||||||||| Sbjct: 17100 tttagatgatgtttaagtt 17118
>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence Length = 98620 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 91 atgttcatatttggtaataacaa 113 |||||||||||||||||| |||| Sbjct: 12663 atgttcatatttggtaattacaa 12641
>gb|AC153614.5| Mus musculus 6 BAC RP23-344N8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205813 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 atgtttaagtttgatcaaa 41 ||||||||||||||||||| Sbjct: 204959 atgtttaagtttgatcaaa 204941
>emb|CR381687.17| Zebrafish DNA sequence from clone DKEY-283C16 in linkage group 11, complete sequence Length = 202525 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 92 tgttcatatttggtaataacaac 114 |||||||||||||||| |||||| Sbjct: 140462 tgttcatatttggtaaaaacaac 140440
>dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT12N11, TM0066, complete sequence Length = 79585 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 ttaagtttgatcaaacatc 45 ||||||||||||||||||| Sbjct: 62342 ttaagtttgatcaaacatc 62324
>gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosome 12, complete sequence Length = 174961 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 44 tccaaatctttgtacaatttcca 66 |||||||||||||||| |||||| Sbjct: 26393 tccaaatctttgtacattttcca 26371 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,470,706 Number of Sequences: 3902068 Number of extensions: 1470706 Number of successful extensions: 106926 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106758 Number of HSP's gapped (non-prelim): 168 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)