ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSR1_ASHGO (Q757H2) Phosphatidylinositol transfer protein CSR1 28 8.3
2ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disinteg... 28 8.3
3ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disinteg... 28 8.3

>CSR1_ASHGO (Q757H2) Phosphatidylinositol transfer protein CSR1|
          Length = 436

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 14  LPSLFGMEPPEFQG---VHTSYMLSVGIWLLVKN*VDSVVTQTLECTRCITDMDSLCPEI 184
           L + F    PE  G   +H +  +   IW ++KN +D VV   +  T+   D++   P  
Sbjct: 274 LITCFEAHYPECLGKLFIHKAPWIFPPIWNIIKNWLDPVVAAKIAFTKTAADLEEFIPAE 333

Query: 185 ATP 193
             P
Sbjct: 334 QIP 336



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>ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 903

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 190 CRNFWTKGIHVCNTPCTF*GLCDNRIN 110
           C+N    G+H C   C   G+C+NR N
Sbjct: 647 CQNISVFGVHKCAMQCHGRGVCNNRKN 673



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>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 909

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 190 CRNFWTKGIHVCNTPCTF*GLCDNRIN 110
           C+N    G+H C   C   G+C+NR N
Sbjct: 649 CQNISVFGVHECAMQCHGRGVCNNRKN 675


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,495,273
Number of Sequences: 219361
Number of extensions: 1175067
Number of successful extensions: 2487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2487
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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