ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HTPG_BACHD (Q9KE51) Chaperone protein htpG (Heat shock protein h... 28 5.7
2SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (... 28 7.4
3SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SAL... 27 9.7
4PYRG_CAUCR (Q9A7K3) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 27 9.7

>HTPG_BACHD (Q9KE51) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 625

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 325 NSTAALRNGNPSDEQHDVILEVAWVLYSAGLIAPMFTVTCK 203
           + + A +  N S + HD+I +     YSA ++A   TVT K
Sbjct: 97  SGSLAFKTENESKDGHDIIGQFGVGFYSAFMVADKVTVTTK 137



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>SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (MSal)|
           (Fragment)
          Length = 1323

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 180 QLPVTKPTLHVTVNMGAISPAEYSTQATSKITSCCSSL 293
           QLP T P  H   +  +I+P   S Q  S  +S C+SL
Sbjct: 507 QLPPTVPGTHNYTDSPSITPVSRSPQRPSPASSECTSL 544



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>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)|
          Length = 1300

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 180 QLPVTKPTLHVTVNMGAISPAEYSTQATSKITSCCSSL 293
           QLP T P  H   +  + +PA  S Q  S  +S C+SL
Sbjct: 529 QLPPTVPGAHGYADSPSATPASRSPQRPSPASSECASL 566



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>PYRG_CAUCR (Q9A7K3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 550

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 4   WRHGVGYHPRAQVLPFADPDLFAN 75
           W  GV YHP  +  PFA   LFA+
Sbjct: 515 WFIGVQYHPELKSRPFAPHPLFAS 538


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,507,655
Number of Sequences: 219361
Number of extensions: 790751
Number of successful extensions: 2067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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