ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
3dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
4dbj|AK111851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
5dbj|AK063039.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
6gb|AC137748.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.68
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
8ref|NM_189878.2| Oryza sativa (japonica cultivar-group), mRNA 40 2.7
9ref|XM_506481.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.7
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
11gb|AY207043.1| Oryza sativa (indica cultivar-group) abcisic acid... 40 2.7
12dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
13dbj|AB125303.1| Oryza sativa (japonica cultivar-group) sapk2 mRN... 40 2.7
14dbj|AB124833.1| Solanum tuberosum StEIG-A51 mRNA for CC-NB-LRR p... 40 2.7
15dbj|AK103945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
16dbj|AK070965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7

>dbj|AK119892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-A10, full
            insert sequence
          Length = 3415

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 171  cgtgcaccacgaagttgccgctgtcctcgtcgtcgncgnccc 212
            ||||||||||||| ||||||||||| ||||||||| || |||
Sbjct: 3181 cgtgcaccacgaaattgccgctgtcatcgtcgtcgtcgtccc 3140



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 171      cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205
                ||||||||||||| ||||||||||| |||||||||
Sbjct: 20910774 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 20910740



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>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090E14
          Length = 161119

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 171   cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205
             ||||||||||||| ||||||||||| |||||||||
Sbjct: 37698 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 37664



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>dbj|AK111851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150C23, full
            insert sequence
          Length = 3975

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 171  cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205
            ||||||||||||| ||||||||||| |||||||||
Sbjct: 3190 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 3156



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>dbj|AK063039.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D03, full
           insert sequence
          Length = 599

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 171 cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205
           ||||||||||||| ||||||||||| |||||||||
Sbjct: 55  cgtgcaccacgaaattgccgctgtcatcgtcgtcg 89



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>gb|AC137748.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0076A09, complete sequence
          Length = 157010

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   ttgccgctgtcctcgtcgtcg 205
             |||||||||||||||||||||
Sbjct: 76929 ttgccgctgtcctcgtcgtcg 76909



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 185      ttgccgctgtcctcgtcgtcg 205
                |||||||||||||||||||||
Sbjct: 15048179 ttgccgctgtcctcgtcgtcg 15048159



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>ref|NM_189878.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 178  cacgaagttgccgctgtcctcgtcgtcg 205
            |||||||| ||||||||||||| |||||
Sbjct: 1230 cacgaagtcgccgctgtcctcgacgtcg 1203



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>ref|XM_506481.1| PREDICTED Oryza sativa (japonica cultivar-group), P0594D10.134 mRNA
          Length = 1414

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 178  cacgaagttgccgctgtcctcgtcgtcg 205
            |||||||| ||||||||||||| |||||
Sbjct: 1232 cacgaagtcgccgctgtcctcgacgtcg 1205



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 178      cacgaagttgccgctgtcctcgtcgtcg 205
                |||||||| ||||||||||||| |||||
Sbjct: 25668247 cacgaagtcgccgctgtcctcgacgtcg 25668220



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>gb|AY207043.1| Oryza sativa (indica cultivar-group) abcisic acid-inducible protein
            kinanase mRNA, partial cds
          Length = 1089

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 178  cacgaagttgccgctgtcctcgtcgtcg 205
            |||||||| ||||||||||||| |||||
Sbjct: 1051 cacgaagtcgccgctgtcctcgacgtcg 1024



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>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 178    cacgaagttgccgctgtcctcgtcgtcg 205
              |||||||| ||||||||||||| |||||
Sbjct: 122220 cacgaagtcgccgctgtcctcgacgtcg 122193



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>dbj|AB125303.1| Oryza sativa (japonica cultivar-group) sapk2 mRNA for
            serine/threonine protein kinase SAPK2, complete cds
          Length = 1401

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 178  cacgaagttgccgctgtcctcgtcgtcg 205
            |||||||| ||||||||||||| |||||
Sbjct: 1233 cacgaagtcgccgctgtcctcgacgtcg 1206



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>dbj|AB124833.1| Solanum tuberosum StEIG-A51 mRNA for CC-NB-LRR protein, complete cds
          Length = 3229

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 3    cacttattgctacactcaagatgcatatttac 34
            |||| ||| |||||||||||| ||||||||||
Sbjct: 2992 cactgatttctacactcaagaggcatatttac 3023



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>dbj|AK103945.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A05, full
            insert sequence
          Length = 1397

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 178  cacgaagttgccgctgtcctcgtcgtcg 205
            |||||||| ||||||||||||| |||||
Sbjct: 1229 cacgaagtcgccgctgtcctcgacgtcg 1202



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>dbj|AK070965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068H23, full
            insert sequence
          Length = 1414

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 178  cacgaagttgccgctgtcctcgtcgtcg 205
            |||||||| ||||||||||||| |||||
Sbjct: 1232 cacgaagtcgccgctgtcctcgacgtcg 1205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,123,412
Number of Sequences: 3902068
Number of extensions: 1123412
Number of successful extensions: 72205
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72080
Number of HSP's gapped (non-prelim): 125
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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