Clone Name | rbastl44f05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-A10, full insert sequence Length = 3415 Score = 56.0 bits (28), Expect = 5e-05 Identities = 38/42 (90%) Strand = Plus / Minus Query: 171 cgtgcaccacgaagttgccgctgtcctcgtcgtcgncgnccc 212 ||||||||||||| ||||||||||| ||||||||| || ||| Sbjct: 3181 cgtgcaccacgaaattgccgctgtcatcgtcgtcgtcgtccc 3140
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 171 cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205 ||||||||||||| ||||||||||| ||||||||| Sbjct: 20910774 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 20910740
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 171 cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205 ||||||||||||| ||||||||||| ||||||||| Sbjct: 37698 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 37664
>dbj|AK111851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150C23, full insert sequence Length = 3975 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 171 cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205 ||||||||||||| ||||||||||| ||||||||| Sbjct: 3190 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 3156
>dbj|AK063039.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D03, full insert sequence Length = 599 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 171 cgtgcaccacgaagttgccgctgtcctcgtcgtcg 205 ||||||||||||| ||||||||||| ||||||||| Sbjct: 55 cgtgcaccacgaaattgccgctgtcatcgtcgtcg 89
>gb|AC137748.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0076A09, complete sequence Length = 157010 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 ttgccgctgtcctcgtcgtcg 205 ||||||||||||||||||||| Sbjct: 76929 ttgccgctgtcctcgtcgtcg 76909
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 ttgccgctgtcctcgtcgtcg 205 ||||||||||||||||||||| Sbjct: 15048179 ttgccgctgtcctcgtcgtcg 15048159
>ref|NM_189878.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1398 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 1230 cacgaagtcgccgctgtcctcgacgtcg 1203
>ref|XM_506481.1| PREDICTED Oryza sativa (japonica cultivar-group), P0594D10.134 mRNA Length = 1414 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 1232 cacgaagtcgccgctgtcctcgacgtcg 1205
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 25668247 cacgaagtcgccgctgtcctcgacgtcg 25668220
>gb|AY207043.1| Oryza sativa (indica cultivar-group) abcisic acid-inducible protein kinanase mRNA, partial cds Length = 1089 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 1051 cacgaagtcgccgctgtcctcgacgtcg 1024
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 122220 cacgaagtcgccgctgtcctcgacgtcg 122193
>dbj|AB125303.1| Oryza sativa (japonica cultivar-group) sapk2 mRNA for serine/threonine protein kinase SAPK2, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 1233 cacgaagtcgccgctgtcctcgacgtcg 1206
>dbj|AB124833.1| Solanum tuberosum StEIG-A51 mRNA for CC-NB-LRR protein, complete cds Length = 3229 Score = 40.1 bits (20), Expect = 2.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 3 cacttattgctacactcaagatgcatatttac 34 |||| ||| |||||||||||| |||||||||| Sbjct: 2992 cactgatttctacactcaagaggcatatttac 3023
>dbj|AK103945.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A05, full insert sequence Length = 1397 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 1229 cacgaagtcgccgctgtcctcgacgtcg 1202
>dbj|AK070965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068H23, full insert sequence Length = 1414 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 cacgaagttgccgctgtcctcgtcgtcg 205 |||||||| ||||||||||||| ||||| Sbjct: 1232 cacgaagtcgccgctgtcctcgacgtcg 1205 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,123,412 Number of Sequences: 3902068 Number of extensions: 1123412 Number of successful extensions: 72205 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72080 Number of HSP's gapped (non-prelim): 125 length of query: 212 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 190 effective length of database: 17,147,199,772 effective search space: 3257967956680 effective search space used: 3257967956680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)