ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
2ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predic... 72 2e-09
3emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 72 2e-09
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
6gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete... 44 0.40
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
10dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
13emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 44 0.40
14emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.40
15emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.40
16ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.6
17gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosom... 42 1.6
18gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, compl... 42 1.6
19gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete... 42 1.6
20gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se... 42 1.6
21emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19,... 42 1.6
22emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in... 42 1.6
23gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 6.3
24ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 6.3
25ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding ca... 40 6.3
26ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 6.3
27gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRN... 40 6.3
28gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 6.3
29ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 6.3
30ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-bind... 40 6.3
31ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 6.3
32gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, co... 40 6.3
33gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, co... 40 6.3
34gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete se... 40 6.3
35gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete s... 40 6.3
36emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chro... 40 6.3
37emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 6.3
38emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chro... 40 6.3
39gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, com... 40 6.3
40emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 40 6.3
41gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, c... 40 6.3
42gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, c... 40 6.3
43ref|XM_627943.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 6.3
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
45gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co... 40 6.3
46dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
47emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on ch... 40 6.3
48dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.3
49gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3... 40 6.3 
>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full
            insert sequence
          Length = 3170

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 92/109 (84%), Gaps = 6/109 (5%)
 Strand = Plus / Minus

                                                                        
Query: 353  catcatatattccacctcttatcagatggattgtgaggaacagcaac-gc-----tgctc 406
            |||||||||| ||| ||| ||||||||| |||| ||||||||| ||| ||     |||| 
Sbjct: 2848 catcatatatgccatctcctatcagatgaattgggaggaacaggaacagcaccattgctt 2789

                                                             
Query: 407  ttcacattttgctgagcctgggaagatgaccgttgcatgcgaggagatg 455
            |||||||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 2788 ttcacattctgctgagcttgggatgatgatcgttgcatgcgaggagatg 2740
to top
>ref|XM_474230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2682

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 388  aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 447
            |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 2643 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 2584

                    
Query: 448  aggagatg 455
            ||||||||
Sbjct: 2583 aggagatg 2576
to top
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 388   aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 447
             |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 90590 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 90531

                     
Query: 448   aggagatg 455
             ||||||||
Sbjct: 90530 aggagatg 90523
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 388      aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 447
                |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 33878691 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 33878632

                        
Query: 448      aggagatg 455
                ||||||||
Sbjct: 33878631 aggagatg 33878624
to top
>gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09,
             complete sequence
          Length = 95755

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 328   ggcacctcgtcgatgtgctgccatcc 353
             ||||||||||||||||||||| ||||
Sbjct: 29872 ggcacctcgtcgatgtgctgcaatcc 29847
to top
>gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete sequence
          Length = 97137

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 225   attccaaggaaaaaatattaag 246
             ||||||||||||||||||||||
Sbjct: 56791 attccaaggaaaaaatattaag 56770
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 328     ggcacctcgtcgatgtgctgccatcc 353
               ||||||||||||||||||||| ||||
Sbjct: 2462850 ggcacctcgtcgatgtgctgcaatcc 2462825
to top
>dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C10, full
            insert sequence
          Length = 2109

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 328  ggcacctcgtcgatgtgctgccatcc 353
            ||||||||||||||||||||| ||||
Sbjct: 1789 ggcacctcgtcgatgtgctgcaatcc 1814
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816
to top
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767
to top
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816
to top
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaccaataagatcaaccaacaa 184
             ||||||||||||||||||||||
Sbjct: 13404 aaccaataagatcaaccaacaa 13425
to top
>ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           (LOC452752), mRNA
          Length = 4056

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  acagatcatcattttttcaaa 76
           |||||||||||||||||||||
Sbjct: 744 acagatcatcattttttcaaa 724
to top
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete
            sequence
          Length = 162676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 167  aataagatcaaccaacaaatgtaca 191
            ||||||||||||||||||| |||||
Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551
to top
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence
          Length = 182661

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 167   aataagatcaaccaacaaatgtaca 191
             ||||||||||||||||||| |||||
Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902
to top
>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 308   ttctagatatttgatttgatggcac 332
             ||||||||||| |||||||||||||
Sbjct: 94586 ttctagatattggatttgatggcac 94610
to top
>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence
          Length = 165682

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    atcaaccaacaaatgtacata 193
              |||||||||||||||||||||
Sbjct: 131886 atcaaccaacaaatgtacata 131866
to top
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence
          Length = 148298

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 394  agcaacgctgctcttcacatt 414
            |||||||||||||||||||||
Sbjct: 4974 agcaacgctgctcttcacatt 4994
to top
>emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22,
             complete sequence
          Length = 159207

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   caaggaaaaaatattaagaaa 249
             |||||||||||||||||||||
Sbjct: 46798 caaggaaaaaatattaagaaa 46778
to top
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 226   ttccaaggaaaaaatattaagaaa 249
             ||||||||||||||||| ||||||
Sbjct: 42422 ttccaaggaaaaaatatgaagaaa 42445
to top
>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 3
           (LOC529923), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 tgaagctgctgctcttctcc 218
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315
to top
>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 2
           (LOC529923), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 tgaagctgctgctcttctcc 218
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315
to top
>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 4
           (LOC529923), mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 tgaagctgctgctcttctcc 218
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315
to top
>gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone
            MGC:81517 IMAGE:6637322), complete cds
          Length = 3425

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   actgctgttgctcgttccaa 101
            ||||||||||||||||||||
Sbjct: 3043 actgctgttgctcgttccaa 3024
to top
>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    gctgctcttcacattttgct 419
              ||||||||||||||||||||
Sbjct: 126157 gctgctcttcacattttgct 126138
to top
>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 4 (LOC477456), mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 tgaagctgctgctcttctcc 218
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519
to top
>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 1 (LOC477456), mRNA
          Length = 2376

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 tgaagctgctgctcttctcc 218
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519
to top
>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 3 (LOC477456), mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 tgaagctgctgctcttctcc 218
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519
to top
>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence
          Length = 211178

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   aaggaaaaaatattaagaaa 249
             ||||||||||||||||||||
Sbjct: 22941 aaggaaaaaatattaagaaa 22922
to top
>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence
          Length = 197964

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 226   ttccaaggaaaaaatattaagaaa 249
             ||||||||||||||||| ||||||
Sbjct: 11400 ttccaaggaaaaaatatgaagaaa 11377
to top
>gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete sequence
          Length = 118625

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   gtattccaaggaaaaaatattaag 246
             |||||||||||||||||| |||||
Sbjct: 27191 gtattccaaggaaaaaattttaag 27214
to top
>gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete sequence
          Length = 125865

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   gtattccaaggaaaaaatattaag 246
             |||||||||||||||||| |||||
Sbjct: 90882 gtattccaaggaaaaaattttaag 90859
to top
>emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 103728

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   atcagtattccaaggaaaaa 238
             ||||||||||||||||||||
Sbjct: 47242 atcagtattccaaggaaaaa 47223
to top
>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part
              of the PARD3 gene for par-3 partitioning defective 3
              homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    gctgctcttcacattttgct 419
              ||||||||||||||||||||
Sbjct: 122764 gctgctcttcacattttgct 122745
to top
>emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chromosome 20 Contains the
            3' end of the C20orf152 gene and a CpG island, complete
            sequence
          Length = 38545

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  tattccaaggaaaaaatatt 243
            ||||||||||||||||||||
Sbjct: 8197 tattccaaggaaaaaatatt 8178
to top
>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence
          Length = 164213

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   aaggaaaaaatattaagaaa 249
             ||||||||||||||||||||
Sbjct: 23018 aaggaaaaaatattaagaaa 22999
to top
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    tctagatatttgatttgatg 328
              ||||||||||||||||||||
Sbjct: 119377 tctagatatttgatttgatg 119358
to top
>gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, complete sequence
          Length = 88688

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 222   agtattccaaggaaaaaatattaagaaa 249
             |||||||||||||||||| ||| |||||
Sbjct: 17332 agtattccaaggaaaaaaaattgagaaa 17305
to top
>gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence
          Length = 87833

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   atgaagctgctgctcttctc 217
             ||||||||||||||||||||
Sbjct: 84973 atgaagctgctgctcttctc 84954
to top
>ref|XM_627943.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_970),
           partial mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 ttccaaggaaaaaatattaa 245
           ||||||||||||||||||||
Sbjct: 966 ttccaaggaaaaaatattaa 985
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     aggaaaaaatattaagaaac 250
               ||||||||||||||||||||
Sbjct: 7050069 aggaaaaaatattaagaaac 7050050
to top
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   atgaagctgctgctcttctc 217
             ||||||||||||||||||||
Sbjct: 46103 atgaagctgctgctcttctc 46084
to top
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   aggaaaaaatattaagaaac 250
             ||||||||||||||||||||
Sbjct: 37649 aggaaaaaatattaagaaac 37630
to top
>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    aaggaaaaaatattaagaaa 249
              ||||||||||||||||||||
Sbjct: 142524 aaggaaaaaatattaagaaa 142543
to top
>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
              sequence
          Length = 186656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    cttctagatatttgatttga 326
              ||||||||||||||||||||
Sbjct: 110819 cttctagatatttgatttga 110800
to top
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence
          Length = 196745

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 222    agtattccaaggaaaaaatattaagaaa 249
              |||||||||||||||||| ||| |||||
Sbjct: 144471 agtattccaaggaaaaaaaattgagaaa 144444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,581,681
Number of Sequences: 3902068
Number of extensions: 5581681
Number of successful extensions: 113767
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113432
Number of HSP's gapped (non-prelim): 335
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top