ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44f01 |
|---|---|
| Clone Library Name | barley_pub |
>PLDA1_BRAOC (O82549) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 810 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/24 (87%), Positives = 22/24 (91%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT+ARILGTKS LPPILTT Sbjct: 787 EFFPDTKARILGTKSDYLPPILTT 810
>PLDA1_ARATH (Q38882) Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD| alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) Length = 810 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/24 (87%), Positives = 22/24 (91%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT+ARILGTKS LPPILTT Sbjct: 787 EFFPDTKARILGTKSDYLPPILTT 810
>PLDA1_RICCO (Q41142) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT+AR+LG KS LPPILTT Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
>PLDA1_PIMBR (O04883) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT+AR+LG KS LPPILTT Sbjct: 785 EFFPDTKARVLGAKSDFLPPILTT 808
>PLDA1_ORYSA (Q43007) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha| 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -2 Query: 339 MEFFPDTRARILGTKSXXLPPILTT 265 ME+FPDTRAR+LG KS +PPILT+ Sbjct: 788 MEYFPDTRARVLGAKSDYMPPILTS 812
>PLDA1_MAIZE (Q43270) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/25 (80%), Positives = 21/25 (84%) Frame = -2 Query: 339 MEFFPDTRARILGTKSXXLPPILTT 265 ME FPDTRAR+LG KS LPPILTT Sbjct: 788 MENFPDTRARVLGNKSDYLPPILTT 812
>PLDA2_ARATH (Q9SSQ9) Phospholipase D alpha 2 (EC 3.1.4.4) (AtPLDalpha2) (PLD| alpha 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 810 Score = 43.5 bits (101), Expect = 1e-04 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT+ARILG KS +PPILTT Sbjct: 787 EFFPDTKARILGVKSDYMPPILTT 810
>PLDA1_TOBAC (P93400) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 E FPDT+AR+LGTKS LPPILTT Sbjct: 785 EHFPDTKARVLGTKSDYLPPILTT 808
>PLDA1_VIGUN (O04865) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 809 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT+ARILG K+ LPPILTT Sbjct: 786 EFFPDTKARILGAKADYLPPILTT 809
>PLDA2_BRAOC (P55939) Phospholipase D alpha 2 precursor (EC 3.1.4.4) (PLD 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 812 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/24 (75%), Positives = 20/24 (83%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPD++ARILG K LPPILTT Sbjct: 789 EFFPDSKARILGNKVDYLPPILTT 812
>PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzeta) (PLD zeta)| Length = 820 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/24 (66%), Positives = 20/24 (83%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 EFFPDT A+++G KS LPPILT+ Sbjct: 797 EFFPDTNAKVVGEKSNYLPPILTS 820
>PLDA2_ORYSA (P93844) Phospholipase D alpha 2 (EC 3.1.4.4) (PLD alpha 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 818 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 +FFPDT+A ++GTK LPP LTT Sbjct: 796 KFFPDTQAPVIGTKG-NLPPFLTT 818
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 30.8 bits (68), Expect = 0.87 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = -1 Query: 322 HPGPHPRHQVGXPSPHPHH 266 HP PHP H P PHPHH Sbjct: 212 HPHPHP-HPHPHPHPHPHH 229
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 30.8 bits (68), Expect = 0.87 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +1 Query: 220 TTKPRPHTGNAGRNLCGEDGGKVXRLGAEDAGPGVG 327 TT PR H G LC E G ED GPG+G Sbjct: 49 TTGPRAHIGGGALALCPESSGV-----REDGGPGLG 79
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 30.0 bits (66), Expect = 1.5 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -1 Query: 322 HPGPHPRHQVGXPSPHPHH 266 HP PHP+ SPHP H Sbjct: 399 HPAPHPQQHSQLQSPHPQH 417
>PLDE1_ARATH (Q9C888) Phospholipase D epsilon (EC 3.1.4.4) (AtPLDepsilon) (PLD| epsilon) (PLDalpha3) Length = 762 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 330 FPDTRARILGTKSXXLPPILTT 265 FPDT+ + G +S PP+LTT Sbjct: 741 FPDTKTLVKGKRSKMFPPVLTT 762
>ETS6_DROME (P29776) DNA-binding protein D-ETS-6| Length = 475 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 9/31 (29%) Frame = -1 Query: 331 LPRHPGP--------HPRHQVGXPS-PHPHH 266 L RHP P HP HQ+G P HPHH Sbjct: 370 LGRHPPPLHHHPQHSHPHHQLGQPHFLHPHH 400
>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Apoptosis-associated nuclear protein) (Proline- and histidine-rich protein) (Proline- and glutamine-rich protein) (PQ-rich protein) Length = 259 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -1 Query: 322 HPGPHPRHQVGXPSPHPH 269 HP PHP HQ+ P P PH Sbjct: 227 HPHPHP-HQIPHPHPQPH 243 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 5/25 (20%) Frame = -1 Query: 322 HPGPHPR-----HQVGXPSPHPHHI 263 HP PHP H P PHPH I Sbjct: 211 HPHPHPHSHPHSHPHPHPHPHPHQI 235
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -1 Query: 340 HGVLPRHPGPHPRHQVGXPSPHPHH 266 H P+HP PHP+ PH H Sbjct: 394 HPQRPQHPAPHPQQHSQLQPPHSQH 418
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -1 Query: 322 HPGPHPRHQVGXPSPHPHH 266 HP PH H P+P PHH Sbjct: 46 HPHPHTPHPHTTPTPTPHH 64
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Frame = -1 Query: 325 RHPGPHPRHQVGXPSPHPH---HIDCVLHFRCVAS 230 +HP HQ P PHPH H V H R +S Sbjct: 211 QHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSS 245
>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Proline- and glutamine-rich protein) (PQR protein) Length = 261 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 3/21 (14%) Frame = -1 Query: 322 HPGPHPR---HQVGXPSPHPH 269 HP PHP HQ P PHPH Sbjct: 207 HPHPHPYSHPHQHPHPHPHPH 227
>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22| Length = 954 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = +2 Query: 92 ATHQSSYSHYRVSQPCTPLRLLTVPQL*QPAIF*NTS---SESPKEPPNRGHTPEMQDAI 262 A +SSY S+ +P+R + + P++ +S S SP PN+G P + + Sbjct: 882 AKGRSSYRAASYSRSRSPVRRVGYSRSRSPSVSGGSSRSPSRSPCRSPNKGRAPTPEKGL 941 Query: 263 YVVRMGGRXSDL 298 R R SDL Sbjct: 942 SPPRKRVRASDL 953
>MEF2A_XENLA (Q03414) Myocyte-specific enhancer factor 2A homolog (Serum| response factor-like protein 2) (SL-2) Length = 516 Score = 28.5 bits (62), Expect = 4.3 Identities = 24/81 (29%), Positives = 27/81 (33%) Frame = +1 Query: 79 YKGRGNTSVLL*SLPRFSTMHTTALINCPTTITTCYFLKHKF*ITKGTTKPRPHTGNAGR 258 Y GNT V S L PTT+ H+ +G P TGNAG Sbjct: 195 YSSPGNTMVTASLAASASLTDARMLSPPPTTL-------HRNVFPQGYPSEPPSTGNAGV 247 Query: 259 NLCGEDGGKVXRLGAEDAGPG 321 LC D G G G Sbjct: 248 MLCSSDLSVPNGAGTSPVGNG 268
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = +2 Query: 89 VATHQSSYSHYRVSQPCTPLRL----LTVPQL*QPAIF*NTSSESPKEPPNRGHTP 244 V+ Q S S V+ P P + PQL QPA+ N+ S P P HTP Sbjct: 791 VSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPHHTP 846
>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor| [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase); Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase)] Length = 654 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -2 Query: 237 WPRFGGSFGDSELVFQKIAGCYSCGTVNKRSGVH 136 WPR G+FG+ + +K+ Y G N ++G++ Sbjct: 225 WPRIDGTFGEDPDLTKKMVRGYVTGMQNGKNGLN 258
>O51V1_HUMAN (Q9H2C8) Olfactory receptor 51V1 (Odorant receptor HOR3'beta1)| (Olfactory receptor OR11-36) Length = 321 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 57 VKYPSLILQRSWQHISPPIVTTAFLNHAHHCAY*LSHNY 173 +K I+ RS+ I+PPI+ F N+ H + LSH++ Sbjct: 151 IKIGLTIIGRSFFFITPPIICLKFFNYCHF--HILSHSF 187
>BRD2_CANFA (Q5TJG6) Bromodomain-containing protein 2| Length = 803 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = +1 Query: 214 KGTTKPRPHTGNAGRNLCGEDGGKVXRLGAEDAGPGVG 327 KG+ PRP + G GG LG GP G Sbjct: 575 KGSRAPRPSQPKKSKKASGSGGGSAATLGPPGFGPSGG 612
>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 457 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +3 Query: 105 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSM 266 P + A L HH A+ + NNL+ SE Q + +HQ K Q M Sbjct: 356 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVM 409
>YN78_YEAST (P53820) Hypothetical 6.0 kDa protein in COS1 5'region| Length = 52 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = -1 Query: 319 PGPHPRHQVGXPSPHPH 269 P P P H P+PHPH Sbjct: 20 PTPTPTHHTHTPTPHPH 36
>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 459 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +3 Query: 105 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSM 266 P + A L HH A+ + NNL+ SE Q + +HQ K Q M Sbjct: 357 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVM 410
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 27.7 bits (60), Expect = 7.4 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Frame = +2 Query: 47 QKPCKVSKSHITKVVATHQSSYSHYRVSQPCTPLRLLT-VPQL*QPAIF*NT---SSESP 214 QK S+ + + + SS H + C P R L P L ++ SESP Sbjct: 1475 QKRNSPSQEELLQPAGSEASSEPHNSTGESCLPRRELEGTPYLGSGISLFSSRDPESESP 1534 Query: 215 KEPPNRGHTP 244 KEP + G TP Sbjct: 1535 KEPAHIGTTP 1544
>LAC3_TRAVI (Q99049) Laccase 3 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) Length = 473 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -1 Query: 316 GPHPRHQVGXPSPHPHHIDCVLHFRCVASV 227 GPHP H G +P P + C + F A + Sbjct: 408 GPHPFHLHGTDNPGPWFLHCHIDFHLQAGL 437
>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD| delta) Length = 868 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 336 EFFPDTRARILGTKSXXLPPILTT 265 E FPD +I+G S LP LTT Sbjct: 845 ETFPDVGGKIIGAHSMALPDTLTT 868
>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 458 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +3 Query: 105 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSM 266 P + A L HH A+ + NNL+ SE Q + +HQ K Q M Sbjct: 356 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKTYEQVM 409 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,822,262 Number of Sequences: 219361 Number of extensions: 1048089 Number of successful extensions: 2854 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2837 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
