ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44f01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009262.1| Triticum aestivum clone wlk4.pk0022.b7:fis, full insert mRNA sequence Length = 2997 Score = 168 bits (85), Expect = 7e-39 Identities = 100/105 (95%) Strand = Plus / Minus Query: 112 tagtcactaccgcgtttctcaaccatgcacaccactgcgcttattaactgtcccacaact 171 |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 2712 tagtcactaccgtggttctcaaccatgcacaccactgcgcttattaacagtcccgcaact 2653 Query: 172 ataacaacctgctattttctgaaacacaagttctgaatcaccaaa 216 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2652 ataacagcctgctattttctgaaacacaagttctgaatcaccaaa 2608 Score = 141 bits (71), Expect = 2e-30 Identities = 78/81 (96%) Strand = Plus / Minus Query: 260 atctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccgg 319 |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 2571 atctatgtggtgaggatggggggaaggtagtccgacttggcgccgaggatgcgggcccgg 2512 Query: 320 gtgtcggggaagaactccatg 340 ||||||||||||||||||||| Sbjct: 2511 gtgtcggggaagaactccatg 2491 Score = 111 bits (56), Expect = 1e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 3 caactaaacattgacaatttataattaaacagtaatacaaacatcagaaaccgtgtaaag 62 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 2787 caactaaacattgacaatttataattaaacagtgatacaaacagcagaaaccgtgtaaag 2728 Query: 63 tatc 66 |||| Sbjct: 2727 tatc 2724
>gb|AY109642.1| Zea mays CL1830_1 mRNA sequence Length = 2876 Score = 81.8 bits (41), Expect = 1e-12 Identities = 63/71 (88%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 ||||||||||||||||||| || |||| ||||||||| | ||||||| |||||| |||| Sbjct: 2546 tctatgtggtgaggatgggcgggaggtaatccgacttgttcccgaggacgcgggcgcggg 2487 Query: 321 tgtcggggaag 331 ||||||||||| Sbjct: 2486 tgtcggggaag 2476
>dbj|D73410.1|MZEPHD1 Zea mays mRNA for phospholipase D, complete cds Length = 2793 Score = 81.8 bits (41), Expect = 1e-12 Identities = 63/71 (88%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 ||||||||||||||||||| || |||| ||||||||| | ||||||| |||||| |||| Sbjct: 2546 tctatgtggtgaggatgggcgggaggtaatccgacttgttcccgaggacgcgggcgcggg 2487 Query: 321 tgtcggggaag 331 ||||||||||| Sbjct: 2486 tgtcggggaag 2476
>gb|AY105267.1| Zea mays PCO139922 mRNA sequence Length = 541 Score = 79.8 bits (40), Expect = 5e-12 Identities = 62/70 (88%) Strand = Plus / Plus Query: 262 ctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccgggt 321 |||||||||||||||||| || |||| ||||||||| ||||||||| |||||| ||||| Sbjct: 353 ctatgtggtgaggatgggcgggaggtaatccgacttgttgccgaggacgcgggcacgggt 412 Query: 322 gtcggggaag 331 ||| |||||| Sbjct: 413 gtcagggaag 422
>dbj|AK061865.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H06, full insert sequence Length = 1084 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 769 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 710 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 709 tgtcaggaaagtactccat 691
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Plus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 3723982 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 3724041 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 3724042 tgtcaggaaagtactccat 3724060
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Plus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 132462 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 132521 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 132522 tgtcaggaaagtactccat 132540
>dbj|AK119523.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E03, full insert sequence Length = 2831 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 2559 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 2500 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 2499 tgtcaggaaagtactccat 2481
>dbj|AK065102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N03, full insert sequence Length = 2851 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 2553 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 2494 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 2493 tgtcaggaaagtactccat 2475
>dbj|AB001920.1| Oryza sativa (japonica cultivar-group) gene for phospholipase D, complete cds Length = 5871 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 5333 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 5274 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 5273 tgtcaggaaagtactccat 5255
>dbj|D73411.1|RICPHD2 Oryza sativa (japonica cultivar-group) mRNA for phospholipase D, complete cds Length = 2990 Score = 73.8 bits (37), Expect = 3e-10 Identities = 68/79 (86%) Strand = Plus / Minus Query: 261 tctatgtggtgaggatggggggaaggtnntccgacttggtgccgaggatgcgggcccggg 320 |||||| ||||||||||||||| | || |||||||||| |||||||| ||||||||| | Sbjct: 2621 tctatgaggtgaggatggggggcatgtaatccgacttggcgccgaggacgcgggcccgtg 2562 Query: 321 tgtcggggaagaactccat 339 |||| || ||| ||||||| Sbjct: 2561 tgtcaggaaagtactccat 2543
>gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complete sequence Length = 209156 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 263 tatgtggtgaggatggggggaag 285 ||||||||||||||||||||||| Sbjct: 92801 tatgtggtgaggatggggggaag 92779
>gb|AC006663.1| Caenorhabditis elegans fosmid H24K24, complete sequence Length = 32209 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 agtaatacaaacatcagaaacc 54 |||||||||||||||||||||| Sbjct: 22145 agtaatacaaacatcagaaacc 22166
>emb|CR391935.9| Zebrafish DNA sequence from clone DKEY-256K13 in linkage group 23, complete sequence Length = 197191 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 caatttataattaaacagtaat 38 |||||||||||||||||||||| Sbjct: 66507 caatttataattaaacagtaat 66486
>emb|BX469903.9| Zebrafish DNA sequence from clone CH211-46H12 in linkage group 23, complete sequence Length = 175747 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 caatttataattaaacagtaat 38 |||||||||||||||||||||| Sbjct: 92895 caatttataattaaacagtaat 92874
>ref|NM_070954.2| Caenorhabditis elegans H24K24.2 (H24K24.2) mRNA, complete cds Length = 1473 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 agtaatacaaacatcagaaacc 54 |||||||||||||||||||||| Sbjct: 469 agtaatacaaacatcagaaacc 490
>emb|BX548247.6| Zebrafish DNA sequence from clone DKEY-177G18 in linkage group 23, complete sequence Length = 180406 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 aattaaacagtaatacaaaca 45 ||||||||||||||||||||| Sbjct: 131290 aattaaacagtaatacaaaca 131270
>gb|BC032099.2| Homo sapiens pygopus homolog 2 (Drosophila), mRNA (cDNA clone MGC:20502 IMAGE:4126360), complete cds Length = 3190 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 936 gtggtgaggatggggggaag 955
>gb|BC013725.1| Homo sapiens pygopus homolog 2 (Drosophila), mRNA (cDNA clone IMAGE:3859726), partial cds Length = 2508 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 246 gtggtgaggatggggggaag 265
>ref|XM_525221.1| PREDICTED: Pan troglodytes similar to Pygopus homolog 2 (LOC469836), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 626 gtggtgaggatggggggaag 645
>ref|XM_593770.2| PREDICTED: Bos taurus similar to Pygopus homolog 2 (LOC540401), mRNA Length = 1773 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 1106 gtggtgaggatggggggaag 1125
>ref|NM_138300.3| Homo sapiens pygopus homolog 2 (Drosophila) (PYGO2), mRNA Length = 3227 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 970 gtggtgaggatggggggaag 989
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tttctgaaacacaagttctg 206 |||||||||||||||||||| Sbjct: 136964 tttctgaaacacaagttctg 136945
>gb|AC127316.3| Mus musculus BAC clone RP23-222G16 from 13, complete sequence Length = 203032 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tttataattaaacagtaata 39 |||||||||||||||||||| Sbjct: 123470 tttataattaaacagtaata 123451
>emb|AL451085.20| Human DNA sequence from clone RP11-307C12 on chromosome 1 Contains the PMVK gene for phosphomevalonate kinase, the PBXIP1 gene for pre-B-cell leukemia transcription factor interacting protein 1, the gene for pygopus 2 (PYGO2), the SHC1 gene for SHC (Src homology 2 domain containing) transforming protein 1, the CKS1B gene for CDC28 protein kinase regulatory subunit 1B, the gene for FAD-synthetase (PP591), the LENEP gene for lens epithelial protein, the ZFP67 gene for zinc finger protein 67 homolog (mouse), the gene for a novel protein (FLJ32934), a novel gene, the gene for a novel protein (FLJ32785) the 5' end of the ADAM15 gene for a disintegrin and metalloproteinase domain 15 (metargidin), and two CpG islands, complete sequence Length = 182166 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 87674 gtggtgaggatggggggaag 87655
>emb|CR860452.1| Pongo pygmaeus mRNA; cDNA DKFZp459G041 (from clone DKFZp459G041) Length = 3222 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 993 gtggtgaggatggggggaag 1012
>emb|CR624320.1| full-length cDNA clone CS0DL007YH03 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2734 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 540 gtggtgaggatggggggaag 559
>dbj|AK095899.1| Homo sapiens cDNA FLJ38580 fis, clone HCHON2008582, highly similar to FERRITIN HEAVY CHAIN Length = 2034 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 810 gtggtgaggatggggggaag 829
>dbj|AK092389.1| Homo sapiens cDNA FLJ35070 fis, clone PLACE5000139 Length = 3128 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 919 gtggtgaggatggggggaag 938
>dbj|AK090545.1| Homo sapiens cDNA FLJ33226 fis, clone ASTRO2001029 Length = 2497 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 288 gtggtgaggatggggggaag 307
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 taaagtatccaagtctcatattac 81 |||| ||||||||||||||||||| Sbjct: 2285010 taaactatccaagtctcatattac 2284987
>gb|AC008914.7| Homo sapiens chromosome 5 clone CTD-2270I16, complete sequence Length = 139677 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aatttataattaaacagtaa 37 |||||||||||||||||||| Sbjct: 36426 aatttataattaaacagtaa 36445
>gb|AF457208.1| Homo sapiens pygopus 2 (PYGO2) mRNA, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 764 gtggtgaggatggggggaag 783
>gb|AF289598.1|AF289598 Homo sapiens clone pp7910 unknown mRNA Length = 2977 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 720 gtggtgaggatggggggaag 739
>gb|AC016632.7| Homo sapiens chromosome 5 clone RP11-175M2, complete sequence Length = 177185 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aatttataattaaacagtaa 37 |||||||||||||||||||| Sbjct: 12231 aatttataattaaacagtaa 12212
>gb|BC006132.1| Homo sapiens pygopus homolog 2 (Drosophila), mRNA (cDNA clone MGC:13050 IMAGE:3627860), complete cds Length = 3193 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtggtgaggatggggggaag 285 |||||||||||||||||||| Sbjct: 936 gtggtgaggatggggggaag 955
>emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in linkage group 18, complete sequence Length = 94961 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ctataacaacctgctattttctga 193 |||||||| ||||||||||||||| Sbjct: 39144 ctataacaccctgctattttctga 39167
>gb|AY111616.1| Zea mays CL18897_1 mRNA sequence Length = 676 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aattaaacagtaatacaaac 44 |||||||||||||||||||| Sbjct: 73 aattaaacagtaatacaaac 92
>gb|AY294150.1| Platyamoeba placida small subunit ribosomal RNA gene, partial sequence Length = 1893 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tgaatcaccaaaggaaccac 224 |||||||||||||||||||| Sbjct: 238 tgaatcaccaaaggaaccac 219 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,890,831 Number of Sequences: 3902068 Number of extensions: 2890831 Number of successful extensions: 66277 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66205 Number of HSP's gapped (non-prelim): 72 length of query: 340 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 318 effective length of database: 17,147,199,772 effective search space: 5452809527496 effective search space used: 5452809527496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
