ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44e09 |
|---|---|
| Clone Library Name | barley_pub |
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 33.9 bits (76), Expect = 0.095 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -3 Query: 404 EQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 303 +QG +F + G W F+V HFS YG +++ + Sbjct: 857 KQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 890
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 33.9 bits (76), Expect = 0.095 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -3 Query: 404 EQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 303 +QG +F + G W F+V HFS YG +++ + Sbjct: 858 KQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 891
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -3 Query: 392 EFISFDGAKGEWKFRVKHFSSYGFGEAEAD 303 EFI F+ G+W F+V+HFS YG + E + Sbjct: 918 EFIDFND--GKWIFKVQHFSRYGLLDDEEE 945
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 143 EFLPMFFCTYLFSLKNAQKLH 81 EF+P FF LF+LKNA +H Sbjct: 148 EFIPYFFLNQLFNLKNATTIH 168
>Y387_LISIN (Q92ES1) Putative Nudix hydrolase lin0387 (EC 3.6.-.-)| Length = 169 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -3 Query: 143 EFLPMFFCTYLFSLKNAQKLH 81 EF+P FF LF LKNA +H Sbjct: 148 EFIPYFFLNQLFELKNATTIH 168
>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +2 Query: 131 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 298 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +2 Query: 131 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 298 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodeling factor| snf22 (EC 3.6.1.-) (ATP-dependent helicase snf22) Length = 1680 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/68 (25%), Positives = 33/68 (48%) Frame = +1 Query: 31 QDSNKIPIHARATLVPECNFCAFFNEKRYVQKNMGRNS*QHSENKSITTNILPDQISYID 210 Q + K + RA N+ + + + YV+ + + SEN S+ ++LP IS+ D Sbjct: 544 QSTGKTEVAKRAQFPTNVNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSISW-D 602 Query: 211 QSYIESSV 234 ++ S + Sbjct: 603 DVFLSSEI 610
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +2 Query: 116 MYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQ 295 ++R+T + S RT+ + + S+ R S ++T R NH E+ + P ++ R + Sbjct: 90 LFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRR 149
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -3 Query: 395 VEFISFDGAKGEWKFRVKHFSSYGF-GEAEADHLADSL 285 + +IS++ G W F+V HFS +G E +A+ D L Sbjct: 586 MNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEIDEDDL 623
>YHD5_YEAST (P38735) Probable ATP-dependent permease YHL035C| Length = 1592 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +1 Query: 7 ATKRMHFIQDSNKIPI--HARATLVPECNFCAFFNEKRYVQKNMGR 138 A++ + + K PI H TLV C AF +E+R++ +NM + Sbjct: 1162 ASRELKRLDSITKSPIFQHFSETLVGVCTIRAFGDERRFILENMNK 1207
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 289 PCSFIDRCCNCCL 251 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 289 PCSFIDRCCNCCL 251 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 289 PCSFIDRCCNCCL 251 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>AB1IP_XENLA (Q6DCV1) Amyloid beta A4 precursor protein-binding family B member| 1-interacting protein (APBB1-interacting protein 1) Length = 653 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +2 Query: 74 CQNVTFVHSSMKKDMYRKTWEGTHSSIQRTKASQPIFSQTRSATST 211 CQNVT + SS + W+ ++ Q K+S+ +T+SAT T Sbjct: 447 CQNVTTISSS-----FSDAWKHGEANKQEKKSSEVNKPETKSATPT 487
>MRP3_RAT (O88563) Canalicular multispecific organic anion transporter 2| (Multidrug resistance-associated protein 3) (MRP-like protein 2) (MLP-2) Length = 1522 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 102 EECTKVTFWHQCSTCVDWNLVTVLNE 25 E+CT +T H+ +T +D+N V VL++ Sbjct: 1468 EDCTVLTIAHRLNTIMDYNRVLVLDK 1493
>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed| message 1 protein) (Castration-induced prostatic apoptosis-related protein 1) (CIPAR-1) Length = 296 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 128 TWEGTHSSIQRTKASQPIFSQTRSAT---STKAT*NRVFTNHPKEAAITTP 271 TW T S+ A+ P+ S T +A+ +T A+ HP+E A+T+P Sbjct: 41 TW--TTSAQHTAMATTPVASATHNASVLRTTAASLTSQLPTHPREEAVTSP 89
>YP96_CAEEL (Q09476) Hypothetical protein C28H8.6 in chromosome III| Length = 256 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +3 Query: 123 EKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIECSPIIQKRQQLQ 266 E++G+ AF E+ +HNQ+SP+ HR R C ++ K ++ Sbjct: 59 ERNGR----AFCEEDYHNQFSPKCQGCHRAITDR--CVSVMNKNFHIE 100
>CXI7_CONRA (Q7Z095) I-superfamily conotoxin R11.7| Length = 46 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -1 Query: 289 PCSFIDRCCNCCL 251 PC + CCNCCL Sbjct: 11 PCEYHSDCCNCCL 23
>BCE1_HUMAN (O60756) Protein BCE-1| Length = 84 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 149 CYEFLPMFFCTYLFSLKNAQKLHSGTNVARAWIGILLL 36 C+ +L F C SLK Q +H N+ +++ +LLL Sbjct: 42 CFLYLRFFPCLSWMSLKWTQAVHCARNIVLSFMLLLLL 79
>RUMA_SHIFL (Q83QD5) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 432 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 320 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 351
>RUMA_ECOLI (P55135) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 432 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 320 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 351
>RUMA_ECOL6 (Q8FEG6) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 432 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 320 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 351
>RUMA_ECO57 (Q8XED8) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 432 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 320 VEKGQQNARLNCLQNVTFYHENLEEDVTKQPW 351
>METE_RALSO (Q8XS05) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 776 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 120 TEKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIE 230 T + EL+ AF E + N+ P +H P++ R+E Sbjct: 667 TSRSNMELLDAFGEFAYPNEIGPGVYDIHSPRVPRVE 703
>ROK1_ASPFU (Q4WRH5) ATP-dependent RNA helicase rok1 (EC 3.6.1.-)| Length = 739 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/75 (24%), Positives = 31/75 (41%) Frame = +3 Query: 156 REQKHHNQYSPRPDQLHRPKLHRIECSPIIQKRQQLQHLSIKLQGISQVVGFGFTKPVGA 335 ++ K + +P + + K R+ P++ ++ I + + GFT P Sbjct: 159 KKTKQQEESTPALTKKEQKKARRVYPQPLVSFKELRTRYKISRRLAENIAEQGFTVP--T 216 Query: 336 EVLHSELPLALGAIK 380 EV LPL LG K Sbjct: 217 EVQLGTLPLLLGGFK 231
>VTDB_RAT (P04276) Vitamin D-binding protein precursor (DBP) (Group-specific| component) (Gc-globulin) (VDB) Length = 476 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%) Frame = -3 Query: 161 FSECCYEFLPM--FFCTY 114 F ECCYE PM F C+Y Sbjct: 296 FEECCYETTPMGIFMCSY 313
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Frame = +3 Query: 159 EQKHHNQYSPRPDQLHRPKLHRIECSPIIQKRQQLQHL-------SIKLQGISQVVGFGF 317 +Q HH+ + P LH H + Q++QQ QH S+ Q Q Sbjct: 29 QQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTTH 88 Query: 318 TKPVGAEVLHSELPLALGAIKRDKL 392 + P A + P+ L A+++ L Sbjct: 89 STPTHAVMYEDPPPVPLVAVQQQHL 113
>BXCN_CLOBO (P46081) Botulinum neurotoxin type C1, nontoxic component| Length = 1196 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/52 (23%), Positives = 24/52 (46%) Frame = +1 Query: 157 ENKSITTNILPDQISYIDQSYIESSVHQSSKRGSNYNTYR*SYKESARWSAS 312 +N + ++ + SY+D SYI S + NY Y + E++ + + Sbjct: 1020 DNPITSEEVIRNYFSYLDNSYIRDSSKSLLEYNKNYQLYNYVFPETSLYEVN 1071
>RUMA_SHISS (Q3YY71) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 433 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352
>RUMA_SHIDS (Q32CD0) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 433 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352
>RUMA_SHIBS (Q31XK5) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 433 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 VTRFQSTHVLHWCQNVTFVHSSMKKDMYRKTW 133 V + Q L+ QNVTF H ++++D+ ++ W Sbjct: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352
>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1156 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -1 Query: 403 NREWSLSRLMAPRASGSSE*STSAPTGLVKPKPTTWLI 290 N W+L + R + S S SAPTGL K TT L+ Sbjct: 80 NEPWNLQKYWIKRLAKSESFSLSAPTGL--GKTTTLLV 115
>METE_BUCBP (Q89B24) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 756 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +3 Query: 120 TEKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIECSPIIQKRQQLQHLSIK 281 T + EL+ F+E K+ N P +H P + IE + RQ + ++ +K Sbjct: 668 TSRSDMELLEFFKEFKYPNDIGPGVYDIHSPNIPSIEWIMTL-LRQAMHYIPVK 720 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,646,852 Number of Sequences: 219361 Number of extensions: 1297346 Number of successful extensions: 3489 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3489 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
