>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence
          Length = 1871

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 315  ttcaccaaa-cccgtaggagctgaagtgcttcactctgaacttccactcgcccttg 369
            ||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct: 1579 ttcaccaaagcccgtaggcgctgaagtgcttcaccctgaacttccactctcccttg 1524

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                           
Query: 313     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 372
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 3343074 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3343015

                                   
Query: 373     ccatcaaacgagataaactc 392
                |||| || ||||| |||||
Sbjct: 3343014 gcatcgaatgagatgaactc 3342995



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                           
Query: 313     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 372
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 3351809 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351750

                                   
Query: 373     ccatcaaacgagataaactc 392
                |||| || ||||| |||||
Sbjct: 3351749 gcatcgaaagagatgaactc 3351730

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                           
Query: 313     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 372
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 3343019 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3342960

                                   
Query: 373     ccatcaaacgagataaactc 392
                |||| || ||||| |||||
Sbjct: 3342959 gcatcgaatgagatgaactc 3342940



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                           
Query: 313     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 372
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 3351754 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351695

                                   
Query: 373     ccatcaaacgagataaactc 392
                |||| || ||||| |||||
Sbjct: 3351694 gcatcgaaagagatgaactc 3351675

>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                         
Query: 313   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 372
             ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 22127 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 22068

                                 
Query: 373   ccatcaaacgagataaactc 392
              |||| || ||||| |||||
Sbjct: 22067 gcatcgaatgagatgaactc 22048



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 313   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 372
             ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 30862 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 30803

                                 
Query: 373   ccatcaaacgagataaactc 392
              |||| || ||||| |||||
Sbjct: 30802 gcatcgaaagagatgaactc 30783

>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence
          Length = 625

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 328 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaa 380
           |||| ||||||||||||||| |||||||||||||| ||||||||  |||||||
Sbjct: 184 taggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236

>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence
          Length = 1900

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 328  taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaacgagata 387
            |||| |||||| |||||||| |||||||||||||| ||||||||  ||||||| || | |
Sbjct: 1730 taggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggacaca 1671

                               
Query: 388  aactccactccctgttcct 406
            |||||| | ||||| ||||
Sbjct: 1670 aactccgcgccctgctcct 1652

>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds
          Length = 732

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 332 agctgaagtgcttcactctgaacttccactc 362
           |||||||||||||||| ||||||||||||||
Sbjct: 418 agctgaagtgcttcaccctgaacttccactc 388

>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 240 atcatccaaaagaggcagcaattacaaca 268
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522

>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 240 atcatccaaaagaggcagcaattacaaca 268
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522

>emb|AL669823.7| Mouse DNA sequence from clone RP23-456O1 on chromosome 11 Contains a
             novel gene and the 5' end of a novel gene, complete
             sequence
          Length = 197012

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 72    ggtgccagaatgtaacttttgtgca 96
             |||||||||||||| ||||||||||
Sbjct: 18507 ggtgccagaatgtatcttttgtgca 18483

>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence
          Length = 150864

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 120   acagaaaaacatgggaaggaactca 144
             ||||||||||||| |||||||||||
Sbjct: 93457 acagaaaaacatgagaaggaactca 93481

>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16,
             complete sequence
          Length = 145536

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 158   agaacaaaagcatcacaaccaatat 182
             ||||||||||||||||||| |||||
Sbjct: 40528 agaacaaaagcatcacaactaatat 40552

>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence
          Length = 175296

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 329    aggagctgaagtgcttcactctgaa 353
              |||||||| ||||||||||||||||
Sbjct: 135270 aggagctgtagtgcttcactctgaa 135294

>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 240    atcatccaaaagaggcagcaattacaaca 268
              ||||||||||||| |||| ||||||||||
Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803

>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 158   agaacaaaagcatcacaaccaatat 182
             ||||||||||||||||||| |||||
Sbjct: 17970 agaacaaaagcatcacaactaatat 17994

>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
              sequence
          Length = 214861

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 329    aggagctgaagtgcttcactctgaa 353
              |||||||| ||||||||||||||||
Sbjct: 206265 aggagctgtagtgcttcactctgaa 206241

>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence
          Length = 256126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 158    agaacaaaagcatcacaaccaatat 182
              ||||||||||||||||||| |||||
Sbjct: 208905 agaacaaaagcatcacaactaatat 208929

>emb|AL845490.8| Mouse DNA sequence from clone RP23-259M16 on chromosome 2, complete
             sequence
          Length = 200794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    atttcattcaggacagtaaca 43
             |||||||||||||||||||||
Sbjct: 81009 atttcattcaggacagtaaca 80989

>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence
          Length = 154657

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaaaagatatgtacagaaaa 127
             ||||||||||||||||||||
Sbjct: 28955 aaaaagatatgtacagaaaa 28936

>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 117    tgtacagaaaaacatgggaaggaa 140
              ||||||||| ||||||||||||||
Sbjct: 120123 tgtacagaagaacatgggaaggaa 120100

>gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA
            clone MGC:80771 IMAGE:5512777), complete cds
          Length = 3361

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 138  gaactcatagcagcattcagagaa 161
            ||||| ||||||||||||||||||
Sbjct: 1829 gaactaatagcagcattcagagaa 1852

>gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA
           clone IMAGE:4682613), partial cds
          Length = 1593

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 gaactcatagcagcattcagagaa 161
           ||||| ||||||||||||||||||
Sbjct: 67  gaactaatagcagcattcagagaa 90

>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence
          Length = 131133

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   atgaaaaaagatatgtacagaaaa 127
             ||||||||||||||||| ||||||
Sbjct: 74940 atgaaaaaagatatgtatagaaaa 74917

>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence
          Length = 40487

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   cagcattcagagaacaaaag 167
             ||||||||||||||||||||
Sbjct: 11828 cagcattcagagaacaaaag 11809

>gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Lawrence Livermore X library)
            complete sequence
          Length = 16699

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  tcagccaggtggtcggcttc 311
            ||||||||||||||||||||
Sbjct: 8656 tcagccaggtggtcggcttc 8675

>emb|AL805903.12| Mouse DNA sequence from clone RP23-464N23 on chromosome 4, complete
              sequence
          Length = 136895

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     aaaaggatgcatttcattca 32
              ||||||||||||||||||||
Sbjct: 112793 aaaaggatgcatttcattca 112774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,811,412
Number of Sequences: 3902068
Number of extensions: 3811412
Number of successful extensions: 75319
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75232
Number of HSP's gapped (non-prelim): 87
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)