ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUNA_PSEFL (P10476) Endoglucanase A precursor (EC 3.2.1.4) (Endo... 31 0.87
2CCNL2_RAT (Q5I0H5) Cyclin-L2 28 5.6
3CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression ... 28 5.6
4CCNL2_MOUSE (Q9JJA7) Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enh... 28 5.6
5CCNL1_CHICK (Q5ZJP9) Cyclin-L1 28 5.6
6YIZI_SCHPO (Q9US42) Hypothetical protein C1002.18 in chromosome I 28 7.4
7RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance ... 27 9.6
8PUR2_CHICK (P21872) Trifunctional purine biosynthetic protein ad... 27 9.6
9ZBT7B_MOUSE (Q64321) Zinc finger and BTB domain-containing prote... 27 9.6
10CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains:... 27 9.6

>GUNA_PSEFL (P10476) Endoglucanase A precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase) (EGA)
          Length = 962

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 17  MATSHLNLQLASNVLHPLSLTRLLDLYSWINGKIRKNKL*IGALAYAFTG 166
           +A++HL  Q AS    PLS       Y W +  +  NKL +  LAY F+G
Sbjct: 440 IASTHLTTQSASGYPAPLSSLE----YYWGSNSVIANKLVLMGLAYDFSG 485



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>CCNL2_RAT (Q5I0H5) Cyclin-L2|
          Length = 520

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 211 SKRSDVNGSWQPANLPCKCI--SKRTNLELVLPNFP 110
           S R+DV   +QP ++ C CI  + RT LE+ LPN P
Sbjct: 224 SLRTDVFVRFQPESIACACIYLAART-LEIPLPNRP 258



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>CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression protein)|
          Length = 520

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 211 SKRSDVNGSWQPANLPCKCI--SKRTNLELVLPNFP 110
           S R+DV   +QP ++ C CI  + RT LE+ LPN P
Sbjct: 226 SLRTDVFVRFQPESIACACIYLAART-LEIPLPNRP 260



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>CCNL2_MOUSE (Q9JJA7) Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced|
           expression protein) (PCEE)
          Length = 518

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 211 SKRSDVNGSWQPANLPCKCI--SKRTNLELVLPNFP 110
           S R+DV   +QP ++ C CI  + RT LE+ LPN P
Sbjct: 224 SLRTDVFVRFQPESIACACIYLAART-LEIPLPNRP 258



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>CCNL1_CHICK (Q5ZJP9) Cyclin-L1|
          Length = 534

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 211 SKRSDVNGSWQPANLPCKCI--SKRTNLELVLPNFP 110
           S R+DV   +QP ++ C CI  + RT LE+ LPN P
Sbjct: 237 SLRTDVFVRFQPESIACACIYLAART-LEIPLPNRP 271



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>YIZI_SCHPO (Q9US42) Hypothetical protein C1002.18 in chromosome I|
          Length = 399

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 32  LNLQLASNVLHPLSLTRLLDLYSWINGKIRKNKL 133
           +N +L   +  PLSL ++L+  SW +G+I   KL
Sbjct: 348 VNERLKPELSEPLSLAQMLEAGSWKSGRIIAKKL 381



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>RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance to Peronospora|
           parasitica protein 8)
          Length = 908

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 47  ASNVLHPLSLTRLLDLYSWINGKIRKNKL*IGALAY-----AFTGQISRLPRTI 193
           +++V H L+L R+LDL SW+  +  K    IG L +      +  ++S LP T+
Sbjct: 568 SASVFHNLTLLRVLDL-SWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTM 620



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>PUR2_CHICK (P21872) Trifunctional purine biosynthetic protein adenosine-3|
           [Includes: Phosphoribosylamine--glycine ligase (EC
           6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase)
           (Phosphoribosylglycinamide synthetase);
           Phosphoribosylformylglycinamidin
          Length = 1003

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 53  NVLHPLSLTRLLDLYSWINGKIRKNKL*IGAL 148
           N+L  L   R L ++S I GKI+ NK+ +  L
Sbjct: 778 NLLQALQANRSLSVHSHIQGKIQTNKVKVAVL 809



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>ZBT7B_MOUSE (Q64321) Zinc finger and BTB domain-containing protein 7B (Zinc|
           finger protein 67) (Zfp-67) (Zinc finger protein Th-POK)
           (T-helper-inducing POZ/Kruppel-like factor)
           (Kruppel-related zinc finger protein cKrox) (c-Krox)
          Length = 544

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 232 RKRRKSAKENASPHFPNSSTPSFFQALINLATKHM 336
           R RR+   + A+PH+P  ST +   A ++L+  H+
Sbjct: 462 RTRRRRKDDVAAPHYPPPSTTTSSPAGLDLSNGHL 496



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>CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D|
           light chain; Cathepsin D heavy chain]
          Length = 345

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 13  LHGYFASQSTISIQCSASVIADSAVGPIFVDQ 108
           L GY +SQ T+S+ C++++   S VG I V++
Sbjct: 83  LSGYLSSQDTVSVPCNSAL---SGVGGIKVER 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,181,218
Number of Sequences: 219361
Number of extensions: 713560
Number of successful extensions: 1559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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