ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YSYF_CAEEL (Q8TA81) Hypothetical F-box protein ZK328.6 28 5.9
2ACHG_CHICK (P02713) Acetylcholine receptor protein, gamma subuni... 28 7.7

>YSYF_CAEEL (Q8TA81) Hypothetical F-box protein ZK328.6|
          Length = 394

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 18  FISGATRLSYNITITFKFKAVRLET-KN*VKWINNT-TEGSH--SHRPDETTKILETKLE 185
           F  G T +SYN   TF+  +  +ET  N VK I  T ++G+H     P +  K++  K E
Sbjct: 257 FADGTTPVSYNPLDTFRISSCSIETVDNLVKSIQMTASQGTHVDGVPPTKKKKVIRKKKE 316



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>ACHG_CHICK (P02713) Acetylcholine receptor protein, gamma subunit precursor|
          Length = 514

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 196 GG*HYLP---HRHSYSPNISYFPFTWSLPTQT*KGTTY 300
           G  ++LP   +R S S +++YFPF W   T   +  TY
Sbjct: 136 GSIYWLPPAIYRSSCSIHVTYFPFDWQNCTMVFQSQTY 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,628,013
Number of Sequences: 219361
Number of extensions: 996866
Number of successful extensions: 2517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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