>RIR1_ARATH (Q9SJ20) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase R1
           subunit) (AtRNR1)
          Length = 816

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLAC 253
           R+RAAADAIKFTVDT  LK              ++ EED+E K+AQ+VCSL N EECLAC
Sbjct: 759 RSRAAADAIKFTVDTAMLK----EKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814

Query: 252 GS 247
           GS
Sbjct: 815 GS 816

>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
          Length = 812

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 36/62 (58%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLAC 253
           RT+ AA+AI+FTV+     V             +  EED E KMA +VCSL N++ C++C
Sbjct: 751 RTKPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810

Query: 252 GS 247
           GS
Sbjct: 811 GS 812

>RIR1_MOUSE (P07742) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
          Length = 792

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 27/62 (43%), Positives = 33/62 (53%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLAC 253
           RTR AA+ I+FT++   LK                 EE+ E   A +VCSL NREECL C
Sbjct: 740 RTRPAANPIQFTLNKEKLKDKEKALKE---------EEEKERNTAAMVCSLENREECLMC 790

Query: 252 GS 247
           GS
Sbjct: 791 GS 792

>RIR1_HUMAN (P23921) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
          Length = 792

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 26/62 (41%), Positives = 33/62 (53%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLAC 253
           RTR AA+ I+FT++   LK                 EE+ E   A +VCSL NR+ECL C
Sbjct: 740 RTRPAANPIQFTLNKEKLK---------DKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790

Query: 252 GS 247
           GS
Sbjct: 791 GS 792

>RIR1_BRARE (P79732) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
           (Ribonucleotide reductase protein R1 class I)
          Length = 794

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/62 (38%), Positives = 30/62 (48%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLAC 253
           RT+  A+ I+FT++   LK                 EE  E   A +VCSL NR ECL C
Sbjct: 740 RTKPGANPIQFTLNKEKLKETQKTTSSED-------EETKERNKAAMVCSLENRHECLMC 792

Query: 252 GS 247
           GS
Sbjct: 793 GS 794

>RIR1_PLAF4 (P50648) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase R1 subunit)
          Length = 806

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEED---DEAKMAQVVCSL--NNRE 268
           RT+AA DAIKFTVDT   K              +    +    E+ + Q VC L  NN E
Sbjct: 740 RTQAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDE 799

Query: 267 ECLAC 253
           +CL C
Sbjct: 800 QCLMC 804

>RIR1_PLAFG (P50647) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase R1 subunit)
          Length = 804

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -2

Query: 432 RTRAAADAIKFTVDTGFLK-VXXXXXXXXXXXXGKLAEEDDEAKMAQVVC---SLNNREE 265
           RT+AA DAIKFTVDT   K               +++ E  +       C     NN E+
Sbjct: 739 RTQAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQ 798

Query: 264 CLAC 253
           CL C
Sbjct: 799 CLMC 802

>SODM_CANAL (O13401) Superoxide dismutase [Mn], mitochondrial precursor (EC|
           1.15.1.1)
          Length = 234

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 78  ATQPSRAAQQRNSSVLKHNRTYINDSLLALFNAN-DQTVWLCNAALVKRKIDATDPSNFR 254
           AT+P  + Q       KH++TY+N+      NA+ +Q V   +   VK+ +      NF 
Sbjct: 47  ATEPYISGQINEIHYTKHHQTYVNN-----LNASIEQAVEAKSKGEVKKLVALEKAINFN 101

Query: 255 MPGTLPGCSRSRQLAP 302
             G L  C   + LAP
Sbjct: 102 GGGYLNHCLWWKNLAP 117

>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 147 LCRCGCV*ELMSSFAGQPLMAELPMLACYLY--YLKTWVAAAVYICIIVCV 1
           LC C C   L+SSF     ++ L      LY   + +W+   +Y+C+  CV
Sbjct: 238 LCVCLCFYLLLSSFLFTLSISSLYKSVSLLYSKVILSWMFLCMYMCVCACV 288

>NU160_HUMAN (Q12769) Nuclear pore complex protein Nup160 (Nucleoporin Nup160)|
           (160 kDa nucleoporin)
          Length = 1316

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 222 KIDATDPSNFRMPGTLPGCSRSRQLAPFWL 311
           K+D TDP N+++   +PG S +   +  WL
Sbjct: 158 KVDFTDPCNYQLIPAVPGISPNSTASTAWL 187

>ARGJ1_ANASP (Q8YVA8) Arginine biosynthesis bifunctional protein argJ 1|
           [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35)
           (Ornithine acetyltransferase) (Ornithine transacetylase)
           (OATase); Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate
          Length = 413

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 90  SRAAQQRNSSVLKHNRTYINDSLLALFNANDQTVWLCNAALVKRKIDA 233
           +RAA +  +S+     T  NDSL+AL N   +T  +        K++A
Sbjct: 212 TRAADRSFNSITVDGDTSTNDSLIALANGQSRTPAITEVGAESEKLEA 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,697,834
Number of Sequences: 219361
Number of extensions: 1073927
Number of successful extensions: 2330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)