>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = -1

Query: 427  TAANFARMLLDNGPNEAQAKKARQVLQACGDRK-DAHRLNYDFRNPFVVCGATFVPIYRG 251
            TAA FAR LL+ GP    A++ R++L AC     DA++LNYD  NPF +C A++ PIYRG
Sbjct: 1120 TAATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRG 1179

Query: 250  QKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 116
            +    CP   + + P  +GQ+C +  ++ +G D  GL  SP Q R
Sbjct: 1180 KPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224

>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = -1

Query: 427  TAANFARMLLDNGPNEAQAKKARQVLQACGDRK-DAHRLNYDFRNPFVVCGATFVPIYRG 251
            TAA FAR LL+ GP    A++ R++L AC     DA++LNYD  NPF +C A++ PIYRG
Sbjct: 1120 TAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRG 1179

Query: 250  QKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 116
            +    CP   + + P  +GQ+C +  ++ +G D  GL  SP Q R
Sbjct: 1180 KPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPLQFR 1224

>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 29/88 (32%), Positives = 48/88 (54%)
 Frame = -1

Query: 403  LLDNGPNEAQAKKARQVLQACGDRKDAHRLNYDFRNPFVVCGATFVPIYRGQKDVSCPYC 224
            ++ +GP   QA+K +   +A     DA  +++D    F +C AT+ PIY     VS P  
Sbjct: 1112 IISSGPRAEQARKIKN--KADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLT 1169

Query: 223  ASRFVPSVEGQLCSICELSVVGADASGL 140
             S++V + + ++  I  +S +GA ASGL
Sbjct: 1170 GSKYVITEKDKIDRIAMISKIGAPASGL 1197

>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = -2

Query: 255 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNR 118
           AGR   P P +  GSCP +R+     A +R  GR        TP+A ++P   R
Sbjct: 522 AGRCLLPRPKSLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERR 575

>SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitochondrial|
           precursor (EC 6.1.1.20) (Phenylalanine--tRNA ligase)
           (PheRS)
          Length = 453

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 264 RSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASS 136
           +ST    +S AP   P S PQ  VS + YA+  W+  TP+  S
Sbjct: 15  KSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILS 57

>NHR48_CAEEL (Q94407) Nuclear hormone receptor family member nhr-48|
          Length = 780

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -1

Query: 394 NGPNEAQAKK-ARQVLQACGDRKDAHRLNYDFRNPFVVCGATFVPIYRGQKDVSCPYCAS 218
           +G NE ++K+ A +V + CGD+  ++  N         C A F      +K++ CP+   
Sbjct: 85  SGGNEKESKRTANKVCRVCGDKAFSYNFNVITCES---CKAFFRRNANKEKEIRCPFNEQ 141

Query: 217 RFVPSVEGQLCSICELS 167
             +  V  + C  C L+
Sbjct: 142 CEINMVSRRFCQRCRLT 158

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
 Frame = -2

Query: 276  QPLSRSTAGRRTSPA------PTARPGSCP------QSRVSCAAYASSRWSGRTPQASSA 133
            QP +RSTA   + PA      PT  PG  P      +   S    A +   GR PQA SA
Sbjct: 3817 QPTTRSTAPAASHPAGKPQPGPTTAPGPQPAGLPRAEQAGSSKPAAKAPQQGRAPQAQSA 3876

Query: 132  P 130
            P
Sbjct: 3877 P 3877

>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 276 QPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAP 130
           Q  SRS +    SP+  +R  S   S VS ++Y+SS  S RT   SS+P
Sbjct: 505 QGRSRSGSSSSGSPSSNSRTSST-SSTVSSSSYSSSSGSSRTSSRSSSP 552

>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 279 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 166
           G P +   AGR   P P   PG C P + +  +AYAS+R
Sbjct: 641 GSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASAR 679

>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 249 RRTSPAPTARPGSCPQSRVSCAAYASS 169
           R   P PT RPG+C  S    A Y SS
Sbjct: 357 RYNGPVPTPRPGACIDSEARAANYTSS 383

>PI2R_MOUSE (P43252) Prostacyclin receptor (Prostanoid IP receptor) (PGI|
           receptor) (Prostaglandin I2 receptor)
          Length = 415

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -2

Query: 273 PLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPLHNRDKISGG 100
           PLSR  +GRR  PAPT+      Q++       SS  +G+    ++ PL   D  S G
Sbjct: 349 PLSRPASGRRDPPAPTSL-----QAKEGSWVPLSSWGTGQVAPLTAVPLTGGDGCSVG 401

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 282 AGQPLSRSTAGRRTSPAPTARPG 214
           AG+P  R   G R SP PT RPG
Sbjct: 595 AGEPGPRGLLGPRGSPGPTGRPG 617

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 279 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 166
           G P +   AGR   P P   PG C P + +  +AY S+R
Sbjct: 640 GSPGAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSAR 678

>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1305

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -2

Query: 255 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDK 112
           AGR   P P +  GS P +R+     A +R  GR        TP+  ++P+  R +
Sbjct: 546 AGRCLLPRPKSLAGSSPSTRLLTLEEAQARTQGRLGTPTEPTTPKTPASPVERRKR 601

>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 267 SRSTAGRRTSPAPTARPGSCPQSRVSCA---AYASSRWSGRTPQASSAPLHNRDKISGGD 97
           SR+    +    PT  P S  +  ++ A   A++ S   GRTP+ +S+P  N+  ++ GD
Sbjct: 558 SRAAMSLQEEAEPTPSPPSPNRESLALALTAAHSRSGSEGRTPERASSPGLNKPLLATGD 617

>ZG58_XENLA (P18730) Gastrula zinc finger protein XLCGF58.1 (Fragment)|
          Length = 420

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
 Frame = -1

Query: 328 DAHRLNYDFRNPFVV--CGATFVP---------IYRGQKDVSCPYCASRF 212
           + H L +  + PF+   CG TF+          I+ G+K  +CP C   F
Sbjct: 50  NVHSLVHSTKKPFICTECGKTFIVKQLLHEHFLIHTGEKPYACPECGKLF 99

>GLYA_THEMA (Q9WZH9) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 427

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 403 LLDNGPNEAQAKKARQVLQACGDRKDAHRLNYDFRNPFVVCG 278
           L+D  P +   K A + L++CG   + + +  + R+PFV  G
Sbjct: 316 LVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASG 357

>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN|
           domain-containing protein 10)
          Length = 725

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
 Frame = -1

Query: 325 AHRLNYDFRNPFV--VCGATFVP---------IYRGQKDVSCPYCASRFV 209
           AHR  +    PF    CG +F           ++ G+K  +CP C  RFV
Sbjct: 484 AHRRVHTGERPFSCQACGRSFTQSSQLVSHQRVHTGEKPYACPQCGKRFV 533

>ZN710_MOUSE (Q3U288) Zinc finger protein 710|
          Length = 666

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
 Frame = -1

Query: 286 VCGATFVPIYR---------GQKDVSCPYCASRFVPSVEGQLC-------SICELSVVGA 155
           VCG +F  +Y          G K   CPYC+S+F  +++G L         + ++S+   
Sbjct: 553 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF--NLKGNLSRHMKVKHGVMDISLDSQ 610

Query: 154 DASGLLCSPTQSR*D 110
           D    L  P  S  D
Sbjct: 611 DPMMELAGPDPSELD 625

>GLNE_VIBVU (Q8DEH6) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 950

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 424 AANFARMLLDNGPNEAQAKKARQVLQACGDRKDAHRLNYDFRN 296
           A +   ML      EA   +  + LQAC D    HR+   FRN
Sbjct: 56  AESLPEMLAQESRQEAYRTRLAEQLQACHDEVAGHRVLRQFRN 98

>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710|
          Length = 664

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
 Frame = -1

Query: 286 VCGATFVPIYR---------GQKDVSCPYCASRF 212
           VCG +F  +Y          G K   CPYC+S+F
Sbjct: 551 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF 584

>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1156

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 283 CGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELS 167
           CG TF       K  +CPYC S F+ S E  + ++ +LS
Sbjct: 661 CGKTFTI-----KSNTCPYCGSVFISSSEKVVSALRKLS 694

>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 985

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 267 SRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSRWSGRTPQASSAPL 127
           SR+T  R+T PAP ++ P   P      A   +SR S  +  A   PL
Sbjct: 11  SRATPARKTPPAPASQTPAPSPGGTAGTALGPTSRRSSGSAAAKDQPL 58

>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)|
          Length = 5065

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +2

Query: 128  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 247
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 4612 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4651



 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +2

Query: 128  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 247
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 4078 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4117



 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +2

Query: 128  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 247
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 3544 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3583



 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +2

Query: 128  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 247
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 3010 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3049



 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +2

Query: 128  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 247
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 2476 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 2515

>GLNE_VIBVY (Q7MNY4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 950

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 424 AANFARMLLDNGPNEAQAKKARQVLQACGDRKDAHRLNYDFRN 296
           A     ML      EA   +  + LQAC D    HR+   FRN
Sbjct: 56  AEGLPEMLAQESRQEAYRTRLAEQLQACHDEVAGHRVLRQFRN 98

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -2

Query: 276  QPLSRSTAGRRTSPA------PTARPGSCP-------QSRVSCAAYASSRWSGRTPQASS 136
            QP +R TA   + PA      PT  PG  P       Q+  S    A +   GR PQA +
Sbjct: 3818 QPTTRGTAPAASQPAGKPQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQQGRAPQAQT 3877

Query: 135  AP 130
             P
Sbjct: 3878 TP 3879

>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1237

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -2

Query: 279  GQPLSRSTAGRRTSPAPTARPGSC-----PQSRVSCAAYASSRWSGR 154
            G P    T   R +P P ARP +C       SR SC   + +RW  R
Sbjct: 954  GPPGGGRTPLARRAPQPPARPATCGPPLPDVSRPSCRHASDARWPVR 1000

>VE7_BPV5 (Q8BDG6) Protein E7|
          Length = 124

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 283 CGATFVPIYRGQKDVSCPYCASR 215
           C + F  + RG  D+ CP+CASR
Sbjct: 98  CISQFEQLLRGPLDLLCPHCASR 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,830,246
Number of Sequences: 219361
Number of extensions: 869404
Number of successful extensions: 3276
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)