Clone Name | rbastl44e04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 799 bits (403), Expect = 0.0 Identities = 418/423 (98%) Strand = Plus / Plus Query: 5 aaaaatctctggtaggtagaatataactgacacaacagtcttcgaactggagatacaaac 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 aaaaatctctggtaggtagaatataactgacacaacagtcttcgaactggagatacaaac 899 Query: 65 atgatgaacacggaggtgaagccacaatagtcgtcgccgccacttatcttatctcgattg 124 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 900 atgatgaacacggaggtgaagccacaatagtcgtcgttgccacttatcttatctcgattg 959 Query: 125 tgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcatatgct 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcatatgct 1019 Query: 185 gcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggggcaggagacgtc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 gcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggggcaggagacgtc 1079 Query: 245 cttctgcccgcggtagatcgggacaaaggttgccccgcagacgacgaacgggtttctgaa 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1080 cttctgcccgcggtagatcgggacaaaggttgccccgcagacgacgaacgggtttctgaa 1139 Query: 305 gtcgtagttcagccggtgggcgtccttcctgtcaccgcaggcctgcaggacctgtcgggc 364 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 gtcgtagttcagctggtgggcgtccttcctgtcaccgcaggcctgcaggacctgtcgggc 1199 Query: 365 cttcttcgcctgggcctcgttcgggccgttgtccaggagcatgcgggcaaagtttgccgc 424 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1200 cttctttgcctgggcctcgttcgggccattgtccaggagcatgcgggcaaagtttgccgc 1259 Query: 425 ggt 427 ||| Sbjct: 1260 ggt 1262
>gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA, partial cds Length = 1826 Score = 81.8 bits (41), Expect = 2e-12 Identities = 155/193 (80%) Strand = Plus / Minus Query: 121 attgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcata 180 |||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||| Sbjct: 1591 attgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccacagccagctcgcata 1532 Query: 181 tgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggggcaggaga 240 || | || ||||| || || | || || |||||||| ||||||| | ||| |||| Sbjct: 1531 tggtacaaagctgcccttcaatgttaggaacaaaccgggatccgcagtatgcgcacgaga 1472 Query: 241 cgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacgaacgggtttc 300 ||||| || ||||||||||| || ||| | || | || |||||||||||||| |||| Sbjct: 1471 tatccttttggccgcggtagatgggaacatacgtcgagccacagacgacgaacggatttc 1412 Query: 301 tgaagtcgtagtt 313 || |||||||||| Sbjct: 1411 tgtagtcgtagtt 1399 Score = 40.1 bits (20), Expect = 5.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 354 acctgtcgggccttcttcgcctgggcctcgttcgggccgttgtccaggagca 405 ||||| || ||||||||||| ||| ||||||| |||| ||| || ||||||| Sbjct: 1358 acctgccgagccttcttcgcttggacctcgttggggctgttctcgaggagca 1307
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 1e-10 Identities = 164/206 (79%) Strand = Plus / Plus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 28424885 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28424944 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28424945 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28425004 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || |||||||| || ||| | || || || ||||| || | Sbjct: 28425005 ggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaa 28425064 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 28425065 atggatttctgtagtcatagttcagc 28425090
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 1e-10 Identities = 164/206 (79%) Strand = Plus / Plus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 28516209 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28516268 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28516269 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28516328 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || |||||||| || ||| | || || || ||||| || | Sbjct: 28516329 ggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaa 28516388 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 28516389 atggatttctgtagtcatagttcagc 28516414
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 75.8 bits (38), Expect = 1e-10 Identities = 164/206 (79%) Strand = Plus / Plus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 19015 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 19074 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 19075 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 19134 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || |||||||| || ||| | || || || ||||| || | Sbjct: 19135 ggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaa 19194 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 19195 atggatttctgtagtcatagttcagc 19220
>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full insert sequence Length = 4221 Score = 75.8 bits (38), Expect = 1e-10 Identities = 164/206 (79%) Strand = Plus / Minus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 3802 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 3743 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3742 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 3683 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || |||||||| || ||| | || || || ||||| || | Sbjct: 3682 ggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaa 3623 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 3622 atggatttctgtagtcatagttcagc 3597
>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full insert sequence Length = 1032 Score = 75.8 bits (38), Expect = 1e-10 Identities = 164/206 (79%) Strand = Plus / Minus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 906 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 847 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 846 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 787 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || |||||||| || ||| | || || || ||||| || | Sbjct: 786 ggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaa 727 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 726 atggatttctgtagtcatagttcagc 701
>ref|XM_469513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3657 Score = 73.8 bits (37), Expect = 4e-10 Identities = 163/205 (79%) Strand = Plus / Minus Query: 113 ttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagag 172 ||||||||| || ||||||||||||||||||||||| || || || || ||||| | || Sbjct: 3657 ttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaag 3598 Query: 173 ctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggg 232 ||| |||||| | || ||||| || |||| || || || |||||||| | ||||| || Sbjct: 3597 ctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacgg 3538 Query: 233 gcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacgaa 292 |||||| || |||||||| || |||||||| || ||| | || || || ||||| || || Sbjct: 3537 gcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaaa 3478 Query: 293 cgggtttctgaagtcgtagttcagc 317 || |||||| |||| ||||||||| Sbjct: 3477 tggatttctgtagtcatagttcagc 3453
>ref|XM_450153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1736 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Minus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || ||||| || || ||| | || || || |||||||| | Sbjct: 1396 ggcaggaaacatccttctggccacggtaaattggaacatatgtggcaccacagacgacaa 1337 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 1336 atggatttctgtagtcatagttcagc 1311
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Plus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 2074192 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2074251 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2074252 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2074311 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || ||||| || || ||| | || || || |||||||| | Sbjct: 2074312 ggcaggaaacatccttctggccacggtaaattggaacatatgtggcaccacagacgacaa 2074371 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 2074372 atggatttctgtagtcatagttcagc 2074397
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1352_A10 Length = 111655 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Plus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 109559 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 109618 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 109619 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 109678 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || ||||| || || ||| | || || || |||||||| | Sbjct: 109679 ggcaggaaacatccttctggccacggtaaattggaacatatgtggcaccacagacgacaa 109738 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 109739 atggatttctgtagtcatagttcagc 109764
>dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A08, full insert sequence Length = 3045 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Minus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 2581 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2522 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2521 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2462 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || ||||| || || ||| | || || || |||||||| | Sbjct: 2461 ggcaggaaacatccttctggccacggtaaattggaacatatgtggcaccacagacgacaa 2402 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 2401 atggatttctgtagtcatagttcagc 2376
>dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I16, full insert sequence Length = 4284 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Minus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 3885 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 3826 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3825 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 3766 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || ||||| || || ||| | || || || |||||||| | Sbjct: 3765 ggcaggaaacatccttctggccacggtaaattggaacatatgtggcaccacagacgacaa 3706 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 3705 atggatttctgtagtcatagttcagc 3680
>dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B07, full insert sequence Length = 1736 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Minus Query: 112 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 171 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 172 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 231 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 232 ggcaggagacgtccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacga 291 ||||||| || |||||||| || ||||| || || ||| | || || || |||||||| | Sbjct: 1396 ggcaggaaacatccttctggccacggtaaattggaacatatgtggcaccacagacgacaa 1337 Query: 292 acgggtttctgaagtcgtagttcagc 317 | || |||||| |||| ||||||||| Sbjct: 1336 atggatttctgtagtcatagttcagc 1311
>gb|AY104039.1| Zea mays PCO096800 mRNA sequence Length = 1207 Score = 46.1 bits (23), Expect = 0.093 Identities = 32/35 (91%) Strand = Plus / Minus Query: 126 gtaggggagcagaggaggcctgaggcgtccgcccc 160 ||||||||||||| |||||||||||||| ||||| Sbjct: 880 gtaggggagcagaccaggcctgaggcgtctgcccc 846
>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence Length = 198267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 gaactggagatacaaacatga 68 ||||||||||||||||||||| Sbjct: 145020 gaactggagatacaaacatga 145000
>gb|AC005021.1| Homo sapiens BAC clone GS1-293C5 from 7, complete sequence Length = 64607 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaaaatctctggtaggtaga 24 |||||||||||||||||||| Sbjct: 61607 aaaaatctctggtaggtaga 61626
>gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, complete sequence Length = 145993 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 128 aggggagcagaggaggcctgaggcgtcc 155 |||| |||||||||||| |||||||||| Sbjct: 90006 agggcagcagaggaggcatgaggcgtcc 89979
>gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence Length = 162336 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 128 aggggagcagaggaggcctgaggcgtcc 155 |||| |||||||||||| |||||||||| Sbjct: 97972 agggcagcagaggaggcatgaggcgtcc 97945
>gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, complete sequence Length = 71715 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaaaaatctctggtaggtag 23 |||||||||||||||||||| Sbjct: 42043 aaaaaatctctggtaggtag 42062
>gb|AY210982.1| Homo sapiens paraoxonase 2 (PON2) gene, complete cds Length = 32705 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaaaatctctggtaggtaga 24 |||||||||||||||||||| Sbjct: 2452 aaaaatctctggtaggtaga 2433
>ref|XM_308807.2| Anopheles gambiae str. PEST ENSANGP00000021654 (ENSANGG00000019165), partial mRNA Length = 2516 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ggcgtccgccccgaccaccg 168 |||||||||||||||||||| Sbjct: 1017 ggcgtccgccccgaccaccg 998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,540,826 Number of Sequences: 3902068 Number of extensions: 2540826 Number of successful extensions: 46164 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46079 Number of HSP's gapped (non-prelim): 84 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)