>UBX_MUSDO (Q25451) Homeotic protein ultrabithorax (Fragment)|
          Length = 248

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 185 GERGVGNRGNPGMTLTTKNNSSAQRTKAGGQAGGG 289
           G  G G  G+ G      N ++ Q T  GG AGGG
Sbjct: 115 GGTGGGGGGSAGSANGANNTANGQNTSGGGGAGGG 149

>FRQ_SORFI (Q09033) Frequency clock protein|
          Length = 997

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 217  RIAAV-TYPPFPWPLEGVMLVSPLHYRLVAPCSRRERPDVLP---RWYVPGKFSSSHDDD 50
            R+A++ T  P P P    ++++PL    VA    R  P  LP    +Y P    SS DD 
Sbjct: 815  RLASIRTSSPLPPPRSRNLILAPLQIEYVAGEFHRLNPASLPPPAMFYPPFSTDSSWDDG 874

Query: 49   DNV 41
            D++
Sbjct: 875  DDL 877

>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)|
           (dRING protein) (Sex comb extra protein)
          Length = 435

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 188 ERGVGNRGNPGMTLTTKNNSSAQRTKAGGQAGGG 289
           ++ + N  N G+ L ++N     RTK GG  GGG
Sbjct: 132 QQALVNSINEGIKLQSQNRPQRFRTKGGGGGGGG 165

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +2

Query: 179 RPGERGVGNRGNPGMTLTTKNNSSAQRTKAGGQAGGG 289
           RPG    GNR NPGM          QR  AG + GGG
Sbjct: 295 RPGGAPGGNRPNPGM--------MPQRPAAGPRPGGG 323

>MAF_AVIS4 (P23091) Transforming protein Maf|
          Length = 369

 Score = 23.5 bits (49), Expect(2) = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   TAIIMISLFKGGFKHYRRHH 60
           +A+I  +  +GG  HY  HH
Sbjct: 159 SAVIAAAAAQGGAPHYHHHH 178



 Score = 23.1 bits (48), Expect(2) = 6.1
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
 Frame = +2

Query: 164 HNAFKRPGERGVGNRGN------PGMTLTTKNNSSAQRTKAGGQAGGG 289
           H+    P   G G  G       PG    +  +SSA  +  GG  GGG
Sbjct: 175 HHHHHHPHHGGGGGGGGHPHGAAPGSAPPSSASSSAAGSGGGGGGGGG 222

>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.4)
          Length = 1985

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 57   SWDEENLPGTYQRGRTSGLS 116
            S ++  +PGTY RGRTSG S
Sbjct: 1821 SCEDLPIPGTYHRGRTSGPS 1840


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,393,556
Number of Sequences: 219361
Number of extensions: 1069471
Number of successful extensions: 3012
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3012
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)