Clone Name | rbastl44d12 |
---|---|
Clone Library Name | barley_pub |
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating inorganic pyrophosphatase, complete cds Length = 2649 Score = 452 bits (228), Expect = e-124 Identities = 280/292 (95%), Gaps = 9/292 (3%) Strand = Plus / Minus Query: 5 caatcatcatgatatcattgttcaagggtgggttcaaacattatcgtcgtcatcatggga 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2649 caatcatcatgatatcattgttcaagggtgggttcaaacattatcgtcgtcatcatggga 2590 Query: 65 cgaggaaaatttgccaggcacataccaacgagggaggacatctggtctctctcttctact 124 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2589 cgaggaaaatttgccagacacataccaacgagggaggacatctggtctctctcttctact 2530 Query: 125 acatggagctacaagccggtaatgtaatggtgagactaacataacgccttcaagaggcca 184 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 2529 acatggagctacaagcc-gtaatgtaat-gtgagactaacataacg-cttcaagaggcca 2473 Query: 185 ggggaaaggggggtaggtaaccgcggcaatcctggaatgacattgacaaccaaaaataac 244 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 2472 ggggaaaggggggtaggtaactgcggcaatcctgg-atgacattgacaaccaaaaataac 2414 Query: 245 agcagcgcacaacgtacgaa-----ggcgggcggtcaggcaggcgggggagt 291 |||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 2413 agcagcgcacaacgtacgaacggcgggcgggcgggcaggcaggcgggggagt 2362
>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA, complete cds Length = 2671 Score = 180 bits (91), Expect = 2e-42 Identities = 215/249 (86%), Gaps = 18/249 (7%) Strand = Plus / Minus Query: 34 gggttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccaggcacatacc--- 90 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 2617 gggttcaaacattatcgtcgtcatcacgggacgaggaaaatttgccagacacataccaat 2558 Query: 91 aacgagggaggacatctggtctctctcttctactacatggagctacaagccggtaatgta 150 || || ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2557 aatgaccgaggacatctggtctctctcttctactacatggagctacaagccg-----gta 2503 Query: 151 atggtgagactaacataacgccttcaagaggcc-aggggaaag-gggggtaggtaaccgc 208 |||||||||||||| |||| | ||||||||| | ||||||| ||||||| ||| || Sbjct: 2502 atggtgagactaacgtaacacacccaagaggccaaagggaaagtgggggta---aactgc 2446 Query: 209 ggcaatcctgg---aatgacattgacaaccaaaaataacagcagcgcacaacgtacgaa- 264 ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||| Sbjct: 2445 ggcaatcctggaataatgaca-caagaaccaaaaataacagcagcgcacaacatacgaac 2387 Query: 265 ggcgggcgg 273 ||||||||| Sbjct: 2386 ggcgggcgg 2378
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 36 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 81 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3935071 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 3935026
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 36 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 81 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40947 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 40902
>dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F19, full insert sequence Length = 2738 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 36 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 81 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2692 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 2647
>dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds Length = 5985 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 36 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 81 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5951 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 5906
>dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds Length = 2710 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 36 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 81 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2677 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 2632
>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21, complete sequence Length = 153142 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 ggcgggcggtcaggcaggcggg 286 |||||||||||||||||||||| Sbjct: 66712 ggcgggcggtcaggcaggcggg 66691
>emb|BX957342.5| Zebrafish DNA sequence from clone CH211-120P12 in linkage group 13, complete sequence Length = 182888 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tggtctctctcttctactaca 127 ||||||||||||||||||||| Sbjct: 109831 tggtctctctcttctactaca 109851
>gb|BC108910.1| Homo sapiens ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5, mRNA (cDNA clone MGC:119670 IMAGE:40011279), complete cds Length = 1953 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcggtcaggcaggcggggga 289 |||||||||||||||||||| Sbjct: 107 gcggtcaggcaggcggggga 88
>gb|BC108911.1| Homo sapiens ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5, mRNA (cDNA clone MGC:119671 IMAGE:40011281), complete cds Length = 1953 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcggtcaggcaggcggggga 289 |||||||||||||||||||| Sbjct: 107 gcggtcaggcaggcggggga 88
>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence Length = 158943 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 acattgacaaccaaaaataa 243 |||||||||||||||||||| Sbjct: 66522 acattgacaaccaaaaataa 66503
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tctctctcttctactacatg 129 |||||||||||||||||||| Sbjct: 137646 tctctctcttctactacatg 137627
>gb|AC146132.3| Pan troglodytes BAC clone RP43-23H13 from 7, complete sequence Length = 164355 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 ttcaagaggccaggggaaag 192 |||||||||||||||||||| Sbjct: 84354 ttcaagaggccaggggaaag 84335
>gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, complete sequence Length = 207139 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ctctctcttctactacatgg 130 |||||||||||||||||||| Sbjct: 166627 ctctctcttctactacatgg 166608
>gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosome 18, complete sequence Length = 195911 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ctctctcttctactacatgg 130 |||||||||||||||||||| Sbjct: 178571 ctctctcttctactacatgg 178590
>ref|XM_808881.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506661.50) partial mRNA Length = 2991 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tcatgggacgaggaaaattt 76 |||||||||||||||||||| Sbjct: 1392 tcatgggacgaggaaaattt 1411
>gb|AC072039.19| Homo sapiens 3 BAC RP11-305O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154964 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tctggtctctctcttctact 124 |||||||||||||||||||| Sbjct: 108378 tctggtctctctcttctact 108359
>ref|XM_812966.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511245.110) partial mRNA Length = 2988 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tcatgggacgaggaaaattt 76 |||||||||||||||||||| Sbjct: 1392 tcatgggacgaggaaaattt 1411
>ref|NM_013305.4| Homo sapiens ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (ST8SIA5), mRNA Length = 2627 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcggtcaggcaggcggggga 289 |||||||||||||||||||| Sbjct: 464 gcggtcaggcaggcggggga 445
>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence Length = 184010 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acattgacaaccaaaaataa 243 |||||||||||||||||||| Sbjct: 38446 acattgacaaccaaaaataa 38465
>gb|AC142299.1| Pan troglodytes BAC clone RP43-121O18 from 7, complete sequence Length = 146878 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ttcaagaggccaggggaaag 192 |||||||||||||||||||| Sbjct: 105556 ttcaagaggccaggggaaag 105575
>emb|AL035692.10|HS329N18 Human DNA sequence from clone RP3-329N18 on chromosome 6q22.1-22.33, complete sequence Length = 84764 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tctggtctctctcttctact 124 |||||||||||||||||||| Sbjct: 50835 tctggtctctctcttctact 50816
>gb|AC090311.12| Homo sapiens chromosome 18, clone RP11-742D12, complete sequence Length = 97882 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcggtcaggcaggcggggga 289 |||||||||||||||||||| Sbjct: 1857 gcggtcaggcaggcggggga 1838
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acattgacaaccaaaaataa 243 |||||||||||||||||||| Sbjct: 77255 acattgacaaccaaaaataa 77274
>gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, complete sequence Length = 166194 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcggtcaggcaggcggggga 289 |||||||||||||||||||| Sbjct: 148679 gcggtcaggcaggcggggga 148660
>dbj|AK056270.1| Homo sapiens cDNA FLJ31708 fis, clone NT2RI2006271, highly similar to Human alpha2,8-sialyltransferase mRNA Length = 2594 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcggtcaggcaggcggggga 289 |||||||||||||||||||| Sbjct: 557 gcggtcaggcaggcggggga 538
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence Length = 181462 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acattgacaaccaaaaataa 243 |||||||||||||||||||| Sbjct: 33181 acattgacaaccaaaaataa 33200
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 aggcgggcggtcaggcaggcgggg 287 |||||||||||||||| ||||||| Sbjct: 2719251 aggcgggcggtcaggcgggcgggg 2719228
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183111 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 acattgacaaccaaaaataa 243 |||||||||||||||||||| Sbjct: 80094 acattgacaaccaaaaataa 80075
>gb|AC004695.1|AC004695 Homo sapiens BAC clone CTA-317H1 from 3p13-3p14.2, complete sequence Length = 149572 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 gaaggcgggcggtcaggcaggcgg 285 |||||||||||| ||||||||||| Sbjct: 102371 gaaggcgggcgggcaggcaggcgg 102394
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 aggcgggcggtcaggcaggcgggg 287 |||||||||||||||| ||||||| Sbjct: 2719195 aggcgggcggtcaggcgggcgggg 2719172
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 aggcgggcggtcaggcaggcgggg 287 |||||||||||||||| ||||||| Sbjct: 88177 aggcgggcggtcaggcgggcgggg 88154
>dbj|AB044479.1| Volvox rousseletii chloroplast psbC gene for photosystem II CP43 apoprotein, strain:UTEX 1862 Length = 780 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 aaccaaaaataacagcagcg 251 |||||||||||||||||||| Sbjct: 370 aaccaaaaataacagcagcg 351
>dbj|AB044478.1| Volvox globator chloroplast psbC gene for photosystem II CP43 apoprotein, strain:UTEX 955 Length = 780 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 aaccaaaaataacagcagcg 251 |||||||||||||||||||| Sbjct: 370 aaccaaaaataacagcagcg 351
>dbj|AB044477.1| Volvox barberi chloroplast psbC gene for photosystem II CP43 apoprotein, strain:UTEX 804 Length = 780 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 aaccaaaaataacagcagcg 251 |||||||||||||||||||| Sbjct: 370 aaccaaaaataacagcagcg 351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,433,578 Number of Sequences: 3902068 Number of extensions: 2433578 Number of successful extensions: 46820 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46719 Number of HSP's gapped (non-prelim): 96 length of query: 291 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 269 effective length of database: 17,147,199,772 effective search space: 4612596738668 effective search space used: 4612596738668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)