Clone Name | rbastl44d11 |
---|---|
Clone Library Name | barley_pub |
>SYR_COREF (Q8FQ57) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 550 Score = 30.8 bits (68), Expect = 0.86 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Frame = -3 Query: 327 DRSASFSLFQFNLPIAPQGQPSPKDGKSGESVARMPPFAPVQAQPCSREQTDVKEYNLF- 151 D F +L A +G+P+P+DG GE + + A V P + ++T + LF Sbjct: 169 DHGRQIDRFALSLLAAAKGEPTPEDGYGGEYIREIAE-AIVAKHPDALDRTPEETQELFR 227 Query: 150 STDQSGYFPLSR*KQHTWGTCSSHFTVY 67 S F R H +GT F VY Sbjct: 228 SEGVEMMFSHIRESLHEFGT---DFDVY 252
>WFS1_MOUSE (P56695) Wolframin| Length = 890 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = -3 Query: 348 PDGNKLADRSASFSLFQFNLPIAPQGQPSPKDGKSGESVARMPPFAPVQAQPCSREQTD 172 P + +AS + P AP+ Q P G+S A P AP Q SRE+TD Sbjct: 21 PQARARLNATASLEQDKIEPPRAPRPQADPSAGRSAGEAAAPEPRAP---QTGSREETD 76
>ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 5) (ADAM-TS 5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (ADAM-TS 11) Length = 930 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -3 Query: 318 ASFSLFQFNLPIAPQGQPS-PKDGKSGESVARMPPFAPVQAQPCSREQTDVKE 163 AS L F LP+A G + P K+G+ PP A AQP R+ +V+E Sbjct: 6 ASLLLCAFRLPLAAVGPAATPAQDKAGQ-----PPTAAAAAQPRRRQGEEVQE 53
>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2| repressor factor) Length = 548 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = -3 Query: 288 PIAPQGQPSPKDGKSGESVARMPPFAPVQAQPCSREQTDVKEYNLFSTDQSG 133 P+AP+ P P S S + P +Q P R Q E + D+SG Sbjct: 352 PMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSG 403
>CAR10_MOUSE (P58660) Caspase recruitment domain-containing protein 10| (Bcl10-interacting MAGUK protein 1) (Bimp1) Length = 1021 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 270 QPSPKDGKSGESVARMPPFAPVQAQPCSREQTDVKEYNL 154 +P P G +G+S ++P A+PCS + +K Y+L Sbjct: 792 RPKPAGGTAGDSAEQLP------AEPCSELERSLKPYSL 824
>PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate| phosphodiesterase-like 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C-like 4) (Phospholipase C-like 4) (Fragment) Length = 1182 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = -3 Query: 285 IAPQGQPSPKDGKSGESVARMPPFAPVQA----QPCSREQTDVKEYNLFS 148 I+ Q P P+D G+ + PF V+ CSREQT V + N F+ Sbjct: 791 ISGQQLPKPRDSMLGDRGEIIDPFVEVEIIGLPVDCSREQTRVVDDNGFN 840
>DGK2_DROME (Q09103) Eye-specific diacylglycerol kinase (EC 2.7.1.107) (Retinal| degeneration A protein) (Diglyceride kinase 2) (DGK 2) (DAG kinase 2) Length = 1457 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -3 Query: 294 NLPIAPQGQP-SPKDGKSGESVARMPPFAPVQAQPCSREQTD 172 +LP+ P P SP SG R+P AP+ + PCS D Sbjct: 359 HLPLDPGSPPISPCSSNSG----RLPALAPIISTPCSSADAD 396
>NHR2_CAEEL (Q10902) Nuclear hormone receptor family member nhr-2| Length = 359 Score = 28.1 bits (61), Expect = 5.6 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 6/102 (5%) Frame = -3 Query: 348 PDGNKLADRSASFSLFQFNLPIA------PQGQPSPKDGKSGESVARMPPFAPVQAQPCS 187 PD AD + S+ + P + P+G P + V +MP FAP Sbjct: 32 PDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTPMTVVPQMPQFAP------- 84 Query: 186 REQTDVKEYNLFSTDQSGYFPLSR*KQHTWGTCSSHFTVYSC 61 D YNL S +F R + H+ V SC Sbjct: 85 ----DFSNYNLTMNAWSEFFKKDRCMVCGDNSTGYHYGVQSC 122
>PLSB_XANCP (Q8P3E3) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)| Length = 886 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%) Frame = -3 Query: 279 PQGQ---PSPKDGKSGESVARMPPFAPV 205 P GQ PSP ++G + A +PP APV Sbjct: 10 PDGQSAPPSPAGAETGATAAALPPAAPV 37
>SYR_CORGL (P35868) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 550 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -3 Query: 327 DRSASFSLFQFNLPIAPQGQPSPKDGKSGESV 232 D F +L A +G+P+P+DG GE + Sbjct: 169 DHGRQIDRFALSLLAAAKGEPTPEDGYGGEYI 200
>PHP_MYCTU (P96413) Phosphotriesterase homology protein| Length = 326 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = +2 Query: 176 VCSLEHGCA*TGAKGGIL--ATDSP 244 V +EHG A TG K GIL ATD P Sbjct: 127 VRDIEHGIADTGIKAGILKCATDEP 151
>KITH_HUMAN (P04183) Thymidine kinase, cytosolic (EC 2.7.1.21)| Length = 234 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = -3 Query: 288 PIAPQGQPS-PKDGKSGESVARMPPFAPVQAQPCS 187 P P + + P GK GE+VA FAP Q CS Sbjct: 197 PAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCS 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,805,988 Number of Sequences: 219361 Number of extensions: 968253 Number of successful extensions: 2596 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2594 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)