ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYR_COREF (Q8FQ57) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 31 0.86
2WFS1_MOUSE (P56695) Wolframin 30 1.1
3ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disinteg... 30 1.9
4ERF_HUMAN (P50548) ETS domain-containing transcription factor ER... 29 2.5
5CAR10_MOUSE (P58660) Caspase recruitment domain-containing prote... 29 2.5
6PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate pho... 29 3.3
7DGK2_DROME (Q09103) Eye-specific diacylglycerol kinase (EC 2.7.1... 28 4.3
8NHR2_CAEEL (Q10902) Nuclear hormone receptor family member nhr-2 28 5.6
9PLSB_XANCP (Q8P3E3) Glycerol-3-phosphate acyltransferase (EC 2.3... 28 7.3
10SYR_CORGL (P35868) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 27 9.5
11PHP_MYCTU (P96413) Phosphotriesterase homology protein 27 9.5
12KITH_HUMAN (P04183) Thymidine kinase, cytosolic (EC 2.7.1.21) 27 9.5

>SYR_COREF (Q8FQ57) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 550

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -3

Query: 327 DRSASFSLFQFNLPIAPQGQPSPKDGKSGESVARMPPFAPVQAQPCSREQTDVKEYNLF- 151
           D       F  +L  A +G+P+P+DG  GE +  +   A V   P + ++T  +   LF 
Sbjct: 169 DHGRQIDRFALSLLAAAKGEPTPEDGYGGEYIREIAE-AIVAKHPDALDRTPEETQELFR 227

Query: 150 STDQSGYFPLSR*KQHTWGTCSSHFTVY 67
           S      F   R   H +GT    F VY
Sbjct: 228 SEGVEMMFSHIRESLHEFGT---DFDVY 252



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>WFS1_MOUSE (P56695) Wolframin|
          Length = 890

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -3

Query: 348 PDGNKLADRSASFSLFQFNLPIAPQGQPSPKDGKSGESVARMPPFAPVQAQPCSREQTD 172
           P      + +AS    +   P AP+ Q  P  G+S    A   P AP   Q  SRE+TD
Sbjct: 21  PQARARLNATASLEQDKIEPPRAPRPQADPSAGRSAGEAAAPEPRAP---QTGSREETD 76



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>ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 5) (ADAM-TS
           5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (ADAM-TS 11)
          Length = 930

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 318 ASFSLFQFNLPIAPQGQPS-PKDGKSGESVARMPPFAPVQAQPCSREQTDVKE 163
           AS  L  F LP+A  G  + P   K+G+     PP A   AQP  R+  +V+E
Sbjct: 6   ASLLLCAFRLPLAAVGPAATPAQDKAGQ-----PPTAAAAAQPRRRQGEEVQE 53



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>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2|
           repressor factor)
          Length = 548

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 288 PIAPQGQPSPKDGKSGESVARMPPFAPVQAQPCSREQTDVKEYNLFSTDQSG 133
           P+AP+  P P    S  S +  P    +Q  P  R Q    E  +   D+SG
Sbjct: 352 PMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSG 403



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>CAR10_MOUSE (P58660) Caspase recruitment domain-containing protein 10|
           (Bcl10-interacting MAGUK protein 1) (Bimp1)
          Length = 1021

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 270 QPSPKDGKSGESVARMPPFAPVQAQPCSREQTDVKEYNL 154
           +P P  G +G+S  ++P      A+PCS  +  +K Y+L
Sbjct: 792 RPKPAGGTAGDSAEQLP------AEPCSELERSLKPYSL 824



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>PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate|
           phosphodiesterase-like 4 (EC 3.1.4.11) (Phosphoinositide
           phospholipase C-like 4) (Phospholipase C-like 4)
           (Fragment)
          Length = 1182

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 285 IAPQGQPSPKDGKSGESVARMPPFAPVQA----QPCSREQTDVKEYNLFS 148
           I+ Q  P P+D   G+    + PF  V+       CSREQT V + N F+
Sbjct: 791 ISGQQLPKPRDSMLGDRGEIIDPFVEVEIIGLPVDCSREQTRVVDDNGFN 840



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>DGK2_DROME (Q09103) Eye-specific diacylglycerol kinase (EC 2.7.1.107) (Retinal|
           degeneration A protein) (Diglyceride kinase 2) (DGK 2)
           (DAG kinase 2)
          Length = 1457

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 294 NLPIAPQGQP-SPKDGKSGESVARMPPFAPVQAQPCSREQTD 172
           +LP+ P   P SP    SG    R+P  AP+ + PCS    D
Sbjct: 359 HLPLDPGSPPISPCSSNSG----RLPALAPIISTPCSSADAD 396



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>NHR2_CAEEL (Q10902) Nuclear hormone receptor family member nhr-2|
          Length = 359

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
 Frame = -3

Query: 348 PDGNKLADRSASFSLFQFNLPIA------PQGQPSPKDGKSGESVARMPPFAPVQAQPCS 187
           PD    AD   + S+ +   P +      P+G P  +       V +MP FAP       
Sbjct: 32  PDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTPMTVVPQMPQFAP------- 84

Query: 186 REQTDVKEYNLFSTDQSGYFPLSR*KQHTWGTCSSHFTVYSC 61
               D   YNL     S +F   R       +   H+ V SC
Sbjct: 85  ----DFSNYNLTMNAWSEFFKKDRCMVCGDNSTGYHYGVQSC 122



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>PLSB_XANCP (Q8P3E3) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)|
          Length = 886

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 279 PQGQ---PSPKDGKSGESVARMPPFAPV 205
           P GQ   PSP   ++G + A +PP APV
Sbjct: 10  PDGQSAPPSPAGAETGATAAALPPAAPV 37



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>SYR_CORGL (P35868) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 550

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 327 DRSASFSLFQFNLPIAPQGQPSPKDGKSGESV 232
           D       F  +L  A +G+P+P+DG  GE +
Sbjct: 169 DHGRQIDRFALSLLAAAKGEPTPEDGYGGEYI 200



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>PHP_MYCTU (P96413) Phosphotriesterase homology protein|
          Length = 326

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 176 VCSLEHGCA*TGAKGGIL--ATDSP 244
           V  +EHG A TG K GIL  ATD P
Sbjct: 127 VRDIEHGIADTGIKAGILKCATDEP 151



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>KITH_HUMAN (P04183) Thymidine kinase, cytosolic (EC 2.7.1.21)|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 288 PIAPQGQPS-PKDGKSGESVARMPPFAPVQAQPCS 187
           P  P  + + P  GK GE+VA    FAP Q   CS
Sbjct: 197 PAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCS 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,805,988
Number of Sequences: 219361
Number of extensions: 968253
Number of successful extensions: 2596
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2594
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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