ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAC11_YEAST (P40960) Protein PAC11 30 1.8
2Y3032_BACAN (Q6HX62) Putative adenine deaminase BA3032/GBAA3032/... 28 4.1
3XFP_BIFAN (Q9AEM9) Xylulose-5-phosphate/fructose-6-phosphate pho... 28 5.3
4S27A2_HUMAN (O14975) Very-long-chain acyl-CoA synthetase (EC 6.2... 25 6.7
5GRPE_MYCCA (P71499) Protein grpE (HSP-70 cofactor) 28 7.0
6ENGB_BUCAI (P57507) Probable GTP-binding protein engB 27 9.1
7YORA_BPP1 (Q06262) Hypothetical 36.0 kDa protein in doc-Gp10 int... 27 9.1

>PAC11_YEAST (P40960) Protein PAC11|
          Length = 533

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 276 PVPYRPL-RVEFDLCTQERRM*QV*SCDEIGLAYLCVPTEDYSFV 145
           PVP   L  +E D CT   R+ ++   DE+G+A +   +ED  +V
Sbjct: 354 PVPLSQLLSLENDTCTYTERLQRLAKFDEVGIACMAYTSEDPQYV 398



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>Y3032_BACAN (Q6HX62) Putative adenine deaminase BA3032/GBAA3032/BAS2818 (EC|
           3.5.4.2) (Adenase) (Adenine aminase)
          Length = 584

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = +3

Query: 189 RSHHKTKPATFFFLGYISRTPHAKVYMVQDRA------QPDELHDCTMLQLCFLSTQPGF 350
           RS HK      +   YI     A +++  DR        P++LH+C ++        P +
Sbjct: 24  RSPHKLLKNATYLNSYIREWMQANIWIYDDRIIYVGEKLPEQLHECEVIDCDGKYVVPSY 83

Query: 351 HAPH 362
             PH
Sbjct: 84  IEPH 87



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>XFP_BIFAN (Q9AEM9) Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase|
           (EC 4.1.2.9) (EC 4.1.2.22)
          Length = 825

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 156 NLLLAHINRLIRSHHKTKPATFFFLG 233
           N LLAHINRLI  H +    T F +G
Sbjct: 72  NFLLAHINRLIADHQQN---TVFIMG 94



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>S27A2_HUMAN (O14975) Very-long-chain acyl-CoA synthetase (EC 6.2.1.-) (VLCS)|
           (Very-long-chain-fatty-acid-CoA ligase) (VLACS)
           (THCA-CoA ligase) (Fatty-acid-coenzyme A ligase, very
           long-chain 1) (Long-chain-fatty-acid--CoA ligase) (EC
           6.2.1.3) (Fatty acid
          Length = 620

 Score = 24.6 bits (52), Expect(2) = 6.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 153 YNLLLAHINRLIRSHHKTKPATFF---FLGYISRTPHAKVYMVQD 278
           Y L +A + R +RS+ + +PA      FL    +TPH    + +D
Sbjct: 32  YFLKVAAVGRRVRSYGQRRPARTILRAFLEKARQTPHKPFLLFRD 76



 Score = 21.6 bits (44), Expect(2) = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 43 PYYISDIGYCISAA 84
          PY+  DIGY +  A
Sbjct: 24 PYFFQDIGYFLKVA 37



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>GRPE_MYCCA (P71499) Protein grpE (HSP-70 cofactor)|
          Length = 206

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 123 NSTTIRNQQNYNLLLAHINRLIRSHH 200
           N   +RN + + ++++ IN ++ SHH
Sbjct: 118 NEVVLRNVKGFEMIVSQINNVLESHH 143



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>ENGB_BUCAI (P57507) Probable GTP-binding protein engB|
          Length = 205

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 239 YVPKKEECSRFSLVMRSD*PIYVCQQKIIVLLVPDCCTIQPQLVLLSEC 93
           Y+ K+E+   F L+M    P+    QKII + V    +I   LVLL++C
Sbjct: 102 YLEKREQIKLFVLLMDIRYPLKKLDQKIISIAVQKKISI---LVLLTKC 147



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>YORA_BPP1 (Q06262) Hypothetical 36.0 kDa protein in doc-Gp10 intergenic|
           region (ORFA)
          Length = 312

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 85  QCQHSDSSTSWG*IVQQSGTNKTIIFCWH 171
           QCQ +D S     IV     N  ++ CWH
Sbjct: 58  QCQAADRSWCDNHIVHAERDNSAVLLCWH 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,586,967
Number of Sequences: 219361
Number of extensions: 1087075
Number of successful extensions: 2595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2595
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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