ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_948594.1| Theileria annulata strain Ankara elongation fac... 42 0.50
2dbj|AP000787.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 0.50
3emb|CT030572.1| Xenopus tropicalis finished cDNA, clone TNeu071k23 40 2.0
4gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Canc... 40 2.0
5emb|X94357.1|SCHRVIILT S.cerevisiae left telomeric region from c... 40 2.0
6emb|X67787.1|SCFZF1 S.cerevisiae FZF1, HXK2 genes and ORF1 for z... 40 2.0
7gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Canc... 40 2.0
8gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Canc... 40 2.0
9dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome 40 2.0
10dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 2.0
11gb|DQ369984.1| HIV-1 isolate 03ZAPS046MB1 from South Africa, com... 40 2.0
12emb|AL929340.4| Zebrafish DNA sequence from clone CH211-248N16 i... 40 2.0
13emb|Z72777.1|SCYGL255W S.cerevisiae chromosome VII reading frame... 40 2.0
14gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, comple... 40 2.0
15emb|AL031635.1|CEY47D3B Caenorhabditis elegans YAC Y47D3B, compl... 38 7.8
16gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete... 38 7.8
17gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, comp... 38 7.8
18gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 7.8
19emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chro... 38 7.8
20emb|CR450789.9| Zebrafish DNA sequence from clone DKEY-7P12 in l... 38 7.8
21gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 38 7.8
22gb|AC094105.3| Homo sapiens chromosome 5 clone RP11-468D11, comp... 38 7.8
23gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic le... 38 7.8
24gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q1... 38 7.8
25gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q1... 38 7.8
26dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
27gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 38 7.8
28dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
29gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, co... 38 7.8
30gb|AC127291.4| Mus musculus BAC clone RP23-365H24 from 8, comple... 38 7.8
31emb|AL627328.17| Mouse DNA sequence from clone RP23-299J22 on ch... 38 7.8

>ref|XM_948594.1| Theileria annulata strain Ankara elongation factor 2 (TA16255)
            partial mRNA
          Length = 3681

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 71   tagttattattctccagggcgtcaa 95
            |||| ||||||||||||||||||||
Sbjct: 3193 tagtcattattctccagggcgtcaa 3169



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>dbj|AP000787.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-712B9, complete
             sequence
          Length = 173441

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    ataaaatcatataccagtagt 74
             |||||||||||||||||||||
Sbjct: 58939 ataaaatcatataccagtagt 58919



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>emb|CT030572.1| Xenopus tropicalis finished cDNA, clone TNeu071k23
          Length = 1750

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 47  ctttgatataaaatcatata 66
           ||||||||||||||||||||
Sbjct: 762 ctttgatataaaatcatata 781



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>gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 32143

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ccagtagttattattctcca 86
             ||||||||||||||||||||
Sbjct: 19111 ccagtagttattattctcca 19130



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>emb|X94357.1|SCHRVIILT S.cerevisiae left telomeric region from chromosome VII
          Length = 39411

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tcaaaaaaggaattatgagc 111
             ||||||||||||||||||||
Sbjct: 20964 tcaaaaaaggaattatgagc 20983



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>emb|X67787.1|SCFZF1 S.cerevisiae FZF1, HXK2 genes and ORF1 for zinc finger protein and
           hexokinase PII
          Length = 4430

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcaaaaaaggaattatgagc 111
           ||||||||||||||||||||
Sbjct: 716 tcaaaaaaggaattatgagc 735



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>gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39373

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ccagtagttattattctcca 86
             ||||||||||||||||||||
Sbjct: 19842 ccagtagttattattctcca 19823



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>gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 205657

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     aaaatcatataccagtagtt 75
              ||||||||||||||||||||
Sbjct: 141192 aaaatcatataccagtagtt 141211



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>dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome
          Length = 43785

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   agattttttctttagctgaa 139
             ||||||||||||||||||||
Sbjct: 25638 agattttttctttagctgaa 25619



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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     tttttctttagctgaaacaa 143
               ||||||||||||||||||||
Sbjct: 1315615 tttttctttagctgaaacaa 1315596



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>gb|DQ369984.1| HIV-1 isolate 03ZAPS046MB1 from South Africa, complete genome
          Length = 9101

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 118  aaagattttttctttagctgaaacaaca 145
            ||||||| |||||||| |||||||||||
Sbjct: 3390 aaagattatttctttaactgaaacaaca 3417



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>emb|AL929340.4| Zebrafish DNA sequence from clone CH211-248N16 in linkage group 20,
              complete sequence
          Length = 163231

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tgatataaaatcatatacca 69
              ||||||||||||||||||||
Sbjct: 115172 tgatataaaatcatatacca 115153



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>emb|Z72777.1|SCYGL255W S.cerevisiae chromosome VII reading frame ORF YGL255w
          Length = 5996

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   tcaaaaaaggaattatgagc 111
            ||||||||||||||||||||
Sbjct: 4657 tcaaaaaaggaattatgagc 4676



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>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence
          Length = 214377

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aaaatcatataccagtagtt 75
             ||||||||||||||||||||
Sbjct: 96152 aaaatcatataccagtagtt 96171



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>emb|AL031635.1|CEY47D3B Caenorhabditis elegans YAC Y47D3B, complete sequence
          Length = 95968

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 123   ttttttctttagctgaaac 141
             |||||||||||||||||||
Sbjct: 16982 ttttttctttagctgaaac 16964



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>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence
          Length = 159722

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    tttgatataaaatcatata 66
             |||||||||||||||||||
Sbjct: 14621 tttgatataaaatcatata 14603



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>gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, complete sequence
          Length = 192927

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     tttgatataaaatcatata 66
              |||||||||||||||||||
Sbjct: 184344 tttgatataaaatcatata 184326



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 127     ttctttagctgaaacaaca 145
               |||||||||||||||||||
Sbjct: 1790007 ttctttagctgaaacaaca 1790025



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>emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chromosome 13 Contains part
             of the DLEU1 gene for deleted in lymphocytic leukemia 1
             (BCMS LEU1), complete sequence
          Length = 123209

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    tttgatataaaatcatata 66
             |||||||||||||||||||
Sbjct: 86377 tttgatataaaatcatata 86359



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>emb|CR450789.9| Zebrafish DNA sequence from clone DKEY-7P12 in linkage group 8, complete
              sequence
          Length = 144569

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 61     catataccagtagttattattct 83
              ||||||||| |||||||||||||
Sbjct: 118539 catataccattagttattattct 118517



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 107     tgagcggccgtaaagattt 125
               |||||||||||||||||||
Sbjct: 2572547 tgagcggccgtaaagattt 2572565



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>gb|AC094105.3| Homo sapiens chromosome 5 clone RP11-468D11, complete sequence
          Length = 186314

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   tttctttagctgaaacaac 144
             |||||||||||||||||||
Sbjct: 71658 tttctttagctgaaacaac 71676



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>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section
              2 of 2
          Length = 440917

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     tttgatataaaatcatata 66
              |||||||||||||||||||
Sbjct: 165078 tttgatataaaatcatata 165060



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>gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q14, complete sequence
          Length = 143107

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    tttgatataaaatcatata 66
             |||||||||||||||||||
Sbjct: 54710 tttgatataaaatcatata 54728



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>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence
          Length = 154065

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   tttgatataaaatcatata 66
            |||||||||||||||||||
Sbjct: 4867 tttgatataaaatcatata 4885



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 116     gtaaagattttttctttag 134
               |||||||||||||||||||
Sbjct: 4604889 gtaaagattttttctttag 4604907



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>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166966

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 116    gtaaagattttttctttag 134
              |||||||||||||||||||
Sbjct: 104355 gtaaagattttttctttag 104373



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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   gtaaagattttttctttag 134
             |||||||||||||||||||
Sbjct: 57758 gtaaagattttttctttag 57776



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>gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, complete sequence
          Length = 209515

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 63     tataccagtagttattatt 81
              |||||||||||||||||||
Sbjct: 130495 tataccagtagttattatt 130513



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>gb|AC127291.4| Mus musculus BAC clone RP23-365H24 from 8, complete sequence
          Length = 208452

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     tcatataccagtagttatt 78
              |||||||||||||||||||
Sbjct: 154747 tcatataccagtagttatt 154729



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>emb|AL627328.17| Mouse DNA sequence from clone RP23-299J22 on chromosome 4, complete
             sequence
          Length = 229494

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    cacaagccggctttgatat 55
             |||||||||||||||||||
Sbjct: 62344 cacaagccggctttgatat 62326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,148,918
Number of Sequences: 3902068
Number of extensions: 2148918
Number of successful extensions: 145445
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145277
Number of HSP's gapped (non-prelim): 168
length of query: 162
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 140
effective length of database: 17,147,199,772
effective search space: 2400607968080
effective search space used: 2400607968080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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