Clone Name | rbastl44d07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_948594.1| Theileria annulata strain Ankara elongation factor 2 (TA16255) partial mRNA Length = 3681 Score = 42.1 bits (21), Expect = 0.50 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 tagttattattctccagggcgtcaa 95 |||| |||||||||||||||||||| Sbjct: 3193 tagtcattattctccagggcgtcaa 3169
>dbj|AP000787.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-712B9, complete sequence Length = 173441 Score = 42.1 bits (21), Expect = 0.50 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ataaaatcatataccagtagt 74 ||||||||||||||||||||| Sbjct: 58939 ataaaatcatataccagtagt 58919
>emb|CT030572.1| Xenopus tropicalis finished cDNA, clone TNeu071k23 Length = 1750 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ctttgatataaaatcatata 66 |||||||||||||||||||| Sbjct: 762 ctttgatataaaatcatata 781
>gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 32143 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccagtagttattattctcca 86 |||||||||||||||||||| Sbjct: 19111 ccagtagttattattctcca 19130
>emb|X94357.1|SCHRVIILT S.cerevisiae left telomeric region from chromosome VII Length = 39411 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcaaaaaaggaattatgagc 111 |||||||||||||||||||| Sbjct: 20964 tcaaaaaaggaattatgagc 20983
>emb|X67787.1|SCFZF1 S.cerevisiae FZF1, HXK2 genes and ORF1 for zinc finger protein and hexokinase PII Length = 4430 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcaaaaaaggaattatgagc 111 |||||||||||||||||||| Sbjct: 716 tcaaaaaaggaattatgagc 735
>gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 39373 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ccagtagttattattctcca 86 |||||||||||||||||||| Sbjct: 19842 ccagtagttattattctcca 19823
>gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 205657 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaaatcatataccagtagtt 75 |||||||||||||||||||| Sbjct: 141192 aaaatcatataccagtagtt 141211
>dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome Length = 43785 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 agattttttctttagctgaa 139 |||||||||||||||||||| Sbjct: 25638 agattttttctttagctgaa 25619
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tttttctttagctgaaacaa 143 |||||||||||||||||||| Sbjct: 1315615 tttttctttagctgaaacaa 1315596
>gb|DQ369984.1| HIV-1 isolate 03ZAPS046MB1 from South Africa, complete genome Length = 9101 Score = 40.1 bits (20), Expect = 2.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 118 aaagattttttctttagctgaaacaaca 145 ||||||| |||||||| ||||||||||| Sbjct: 3390 aaagattatttctttaactgaaacaaca 3417
>emb|AL929340.4| Zebrafish DNA sequence from clone CH211-248N16 in linkage group 20, complete sequence Length = 163231 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 tgatataaaatcatatacca 69 |||||||||||||||||||| Sbjct: 115172 tgatataaaatcatatacca 115153
>emb|Z72777.1|SCYGL255W S.cerevisiae chromosome VII reading frame ORF YGL255w Length = 5996 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcaaaaaaggaattatgagc 111 |||||||||||||||||||| Sbjct: 4657 tcaaaaaaggaattatgagc 4676
>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence Length = 214377 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaaatcatataccagtagtt 75 |||||||||||||||||||| Sbjct: 96152 aaaatcatataccagtagtt 96171
>emb|AL031635.1|CEY47D3B Caenorhabditis elegans YAC Y47D3B, complete sequence Length = 95968 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 ttttttctttagctgaaac 141 ||||||||||||||||||| Sbjct: 16982 ttttttctttagctgaaac 16964
>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence Length = 159722 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 tttgatataaaatcatata 66 ||||||||||||||||||| Sbjct: 14621 tttgatataaaatcatata 14603
>gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, complete sequence Length = 192927 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 tttgatataaaatcatata 66 ||||||||||||||||||| Sbjct: 184344 tttgatataaaatcatata 184326
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ttctttagctgaaacaaca 145 ||||||||||||||||||| Sbjct: 1790007 ttctttagctgaaacaaca 1790025
>emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chromosome 13 Contains part of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1), complete sequence Length = 123209 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 tttgatataaaatcatata 66 ||||||||||||||||||| Sbjct: 86377 tttgatataaaatcatata 86359
>emb|CR450789.9| Zebrafish DNA sequence from clone DKEY-7P12 in linkage group 8, complete sequence Length = 144569 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 61 catataccagtagttattattct 83 ||||||||| ||||||||||||| Sbjct: 118539 catataccattagttattattct 118517
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 tgagcggccgtaaagattt 125 ||||||||||||||||||| Sbjct: 2572547 tgagcggccgtaaagattt 2572565
>gb|AC094105.3| Homo sapiens chromosome 5 clone RP11-468D11, complete sequence Length = 186314 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 tttctttagctgaaacaac 144 ||||||||||||||||||| Sbjct: 71658 tttctttagctgaaacaac 71676
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 tttgatataaaatcatata 66 ||||||||||||||||||| Sbjct: 165078 tttgatataaaatcatata 165060
>gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q14, complete sequence Length = 143107 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 tttgatataaaatcatata 66 ||||||||||||||||||| Sbjct: 54710 tttgatataaaatcatata 54728
>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence Length = 154065 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 tttgatataaaatcatata 66 ||||||||||||||||||| Sbjct: 4867 tttgatataaaatcatata 4885
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 gtaaagattttttctttag 134 ||||||||||||||||||| Sbjct: 4604889 gtaaagattttttctttag 4604907
>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166966 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 gtaaagattttttctttag 134 ||||||||||||||||||| Sbjct: 104355 gtaaagattttttctttag 104373
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 gtaaagattttttctttag 134 ||||||||||||||||||| Sbjct: 57758 gtaaagattttttctttag 57776
>gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, complete sequence Length = 209515 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 tataccagtagttattatt 81 ||||||||||||||||||| Sbjct: 130495 tataccagtagttattatt 130513
>gb|AC127291.4| Mus musculus BAC clone RP23-365H24 from 8, complete sequence Length = 208452 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 tcatataccagtagttatt 78 ||||||||||||||||||| Sbjct: 154747 tcatataccagtagttatt 154729
>emb|AL627328.17| Mouse DNA sequence from clone RP23-299J22 on chromosome 4, complete sequence Length = 229494 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cacaagccggctttgatat 55 ||||||||||||||||||| Sbjct: 62344 cacaagccggctttgatat 62326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,148,918 Number of Sequences: 3902068 Number of extensions: 2148918 Number of successful extensions: 145445 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145277 Number of HSP's gapped (non-prelim): 168 length of query: 162 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 140 effective length of database: 17,147,199,772 effective search space: 2400607968080 effective search space used: 2400607968080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)