Clone Name | rbastl44d06 |
---|---|
Clone Library Name | barley_pub |
>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7| Length = 695 Score = 31.2 bits (69), Expect = 0.65 Identities = 20/63 (31%), Positives = 27/63 (42%) Frame = +1 Query: 163 PSAIPCSSTICPQLQSRFTSRLLSSLPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQ 342 PS P S P + TS ++ ASTL P DT+GS S+ P S Sbjct: 374 PSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433 Query: 343 ISS 351 ++S Sbjct: 434 LAS 436
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Frame = +2 Query: 203 FKADLPLG---------CCLRCQG*GMMHPPCFPSKHLTLQVLKAHLSRDQTSLNKSAQL 355 F LPLG CCLR G +H P F S L + K+ L+ D+ L Sbjct: 267 FTQRLPLGYELHMGKERCCLR--GLDHLHGPTFHSICGNLMIYKSSLTNDRLMFEHDESL 324 Query: 356 H 358 H Sbjct: 325 H 325
>LHR2A_RAT (Q75WE7) Loss of heterozygosity 11 chromosomal region 2 gene A| protein homolog (Mast cell surface antigen 1) (Masa-1) Length = 822 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = +1 Query: 244 GIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQISSASLKL 366 GIG AST L K SG + I D Q + SLKL Sbjct: 420 GIGQGASTSLIKNIARVSGGTAEFITGKDRMQAKALGSLKL 460
>AAER_ECOLI (P67662) HTH-type transcriptional activator aaeR| Length = 309 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +1 Query: 172 IPCSSTICPQLQSRFTSRLLSSLPGIGNDASTLLPKQTLDTSG 300 I CSST+ + + T+++L PG+ + T +P L G Sbjct: 96 IGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADG 138
>AAER_ECOL6 (P67663) HTH-type transcriptional activator aaeR| Length = 309 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +1 Query: 172 IPCSSTICPQLQSRFTSRLLSSLPGIGNDASTLLPKQTLDTSG 300 I CSST+ + + T+++L PG+ + T +P L G Sbjct: 96 IGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADG 138
>AAER_ECO57 (P67664) HTH-type transcriptional activator aaeR| Length = 309 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +1 Query: 172 IPCSSTICPQLQSRFTSRLLSSLPGIGNDASTLLPKQTLDTSG 300 I CSST+ + + T+++L PG+ + T +P L G Sbjct: 96 IGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADG 138
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = +1 Query: 160 PPSAIPCSSTICPQLQSRFTS----RL--LSSLPGIGNDASTLLPKQTLDTSGSKSTLIK 321 PP+ P +S P+ + + RL SLP +G+ S ++L G + ++ Sbjct: 817 PPTVRPATSQQPPKEDQKIPTLAEYRLHGTGSLPPLGSWRSGFTRAESLVRGGGEGSMAN 876 Query: 322 RPDESQQISSASLK 363 RP+ + +S +LK Sbjct: 877 RPNNANHLSPQALK 890 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,919,362 Number of Sequences: 219361 Number of extensions: 779617 Number of successful extensions: 2173 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2164 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)