>ARGC_XYLFT (Q87EL1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 327

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 VSLT*NLWLNQMFHRQHTFRIYTTDFGSQPI 243
           ++LT NLWL +   R+H   +Y T + + P+
Sbjct: 219 ITLTANLWLQRPLTREHIKTLYATRYANDPL 249

>ARGC_XYLFA (Q9PEM6) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 333

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 VSLT*NLWLNQMFHRQHTFRIYTTDFGSQPI 243
           ++LT NLWL +   R+H   +Y T + + P+
Sbjct: 219 ITLTANLWLQRPLTREHIKILYATRYANDPL 249

>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 302

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 303 VLLQRLLVNRMGRVYTVIKFNRLRTKIGCVNP 208
           +L Q+L    + R YT I   +LRTK G +NP
Sbjct: 156 ILDQQLEKKTLKRTYTAIAEGKLRTKKGTINP 187

>KITH_SFVKA (P07605) Thymidine kinase (EC 2.7.1.21)|
          Length = 176

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 364 LLAVRSLRGTQRGSPI--LKMVCALAKTIGKQNGTCLHCYQ 248
           +L V +L GT +  P   +  +  LA+ + K N  C++CY+
Sbjct: 103 VLIVAALDGTFQRKPFSNISELIPLAENVTKLNAVCMYCYK 143

>KITH_MYXVU (P28851) Thymidine kinase (EC 2.7.1.21)|
          Length = 178

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 364 LLAVRSLRGTQRGSPILKM--VCALAKTIGKQNGTCLHCYQ 248
           +L V +L GT +  P   +  +  LA+ + K N  C++CY+
Sbjct: 105 VLIVAALDGTFQRKPFTNICELIPLAENVTKLNAVCMYCYK 145

>KITH_MYXVL (Q9Q8N6) Thymidine kinase (EC 2.7.1.21)|
          Length = 178

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 364 LLAVRSLRGTQRGSPILKM--VCALAKTIGKQNGTCLHCYQ 248
           +L V +L GT +  P   +  +  LA+ + K N  C++CY+
Sbjct: 105 VLIVAALDGTFQRKPFTNICELIPLAENVTKLNAVCMYCYK 145

>VAL1_WDV (P06847) AL1 protein (Putative composite protein) (C1 protein)|
          Length = 264

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 48  CNELGGSIIKQRMLQANKFQTRTLIGCYIEDRIPRVLDMKPVVKPNVS*ATYLQDLHNRF 227
           CN++   I K+     N  +  T +      R  R  DMK +++ + S   +L  + NRF
Sbjct: 100 CNQVRDYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRF 159

Query: 228 WF 233
            F
Sbjct: 160 PF 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,888,365
Number of Sequences: 219361
Number of extensions: 1075449
Number of successful extensions: 1691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)