>PODXL_MOUSE (Q9R0M4) Podocalyxin-like protein 1 precursor|
          Length = 503

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +2

Query: 113 PLELMALASVSFPWRTLLSDAELYFSSVDDATTKPEPTFQYFPSPA-----QHLP-PLPC 274
           P   + L +VS     L + ++L  +   D TT P+      PS A     QH P  +P 
Sbjct: 137 PTTTLGLINVSSQPTDLNTTSKLLSTPTTDNTTSPQQPVDSSPSTASHPVGQHTPAAVPS 196

Query: 275 TSGSSPSEFDTDTS 316
           +SGS+PS   TD S
Sbjct: 197 SSGSTPS---TDNS 207

>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC|
           2.7.11.1)
          Length = 742

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 203 ATTKPEPTFQYFPSPAQHLPPLPCTSGSSPSEFDTDTSLQLP 328
           ATT P P+    P P  H PP P      P +   + S + P
Sbjct: 290 ATTSPNPSLAIEPPPPSHGPPRPSEPLPDPGDDADEPSAEKP 331

>LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 protein)|
          Length = 350

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -3

Query: 196 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGFFSKMFVYGWL----FPVSKL 35
           D  +VQL   +    ++A GG  H+L GL   L C  F    F + W     FP+  L
Sbjct: 210 DVSDVQLEFTKLNIYFKARGGAYHRLHGLVANLGCLSF---CFCWFWFRLYWFPLKVL 264

>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 882

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 140 VSFPWRTLLSDAELYFSSVDDATTKPEPTF 229
           V FP  + LSDA L  S ++ ATT+PE  F
Sbjct: 204 VDFPTNSNLSDASLVPSFLEIATTRPETMF 233

>IPNS_STRCT (Q53932) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 321

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
 Frame = -3

Query: 262 WQVLRRGREVLEGW------LGLGRRVVDGG----EVQLGVGEQRSPWEAHGGERHQLQG 113
           + + R GRE +E W       G    ++  G    EV +   E+R P     GE++  + 
Sbjct: 90  YYMARPGRETVESWCYLNPSFGEDHPMMKAGTPMHEVNVWPDEERHPDFGSFGEQYHREV 149

Query: 112 LAVRLACCG 86
            A R  CCG
Sbjct: 150 SASRRCCCG 158

>VGLG_BRSVA (P62648) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 128 ALASVSFPWRTLLSDAELYFSSVDDATTKP--EPTFQYFPSPAQHLPPLPCTSGSSPSEF 301
           AL S++    T L    + + SV +A  KP  +PT Q    P  H P LP       +  
Sbjct: 42  ALTSLAMITLTSLVITAIIYISVGNAKAKPTSKPTTQQTQQPQNHTPLLPTEHNHKSTHT 101

Query: 302 DT-DTSLQLP 328
            T  T+L  P
Sbjct: 102 STQSTTLSQP 111

>VGLG_BRSV2 (O10685) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 128 ALASVSFPWRTLLSDAELYFSSVDDATTKP--EPTFQYFPSPAQHLPPLPCTSGSSPSEF 301
           AL S++    T L    + + SV +A  KP  +PT Q    P  H P LP       +  
Sbjct: 42  ALTSLAMITLTSLVITAIIYISVGNAKAKPTSKPTTQQTQQPQNHTPLLPTEHNHKSTHT 101

Query: 302 DT-DTSLQLP 328
            T  T+L  P
Sbjct: 102 STQSTTLSQP 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,032,564
Number of Sequences: 219361
Number of extensions: 818617
Number of successful extensions: 3277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)