Clone Information

BLAST Search Result

Clone Name	rbastl44d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476056.1\| Oryza sativa (japonica cultivar-group), predic...	107	3e-20
2	gb\|AC087553.3\| Oryza sativa (japonica cultivar-group) chromosome...	107	3e-20
3	gb\|AC084817.5\| Oryza sativa (japonica cultivar-group) chromosome...	107	3e-20
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	107	3e-20
5	gb\|AC098613.2\| Homo sapiens chromosome 3 clone RP11-24F11, compl...	42	1.5
6	gb\|AC104304.2\| Homo sapiens chromosome 3 clone RP11-509I21, comp...	42	1.5
7	gb\|AC162801.2\| Mus musculus BAC clone RP24-65E6 from chromosome ...	42	1.5
8	gb\|AC156798.2\| Mus musculus BAC clone RP23-378B3 from chromosome...	42	1.5
9	gb\|CP000252.1\| Syntrophus aciditrophicus SB, complete genome	42	1.5
10	gb\|AF508798.1\| Homo sapiens lactoferrin gene, exons 1 through 6 ...	42	1.5
11	ref\|NM_101556.3\| Arabidopsis thaliana unknown protein AT1G16950 ...	40	6.0
12	ref\|XM_522330.1\| PREDICTED: Pan troglodytes similar to potassium...	40	6.0
13	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	6.0
14	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	6.0
15	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	6.0
16	gb\|AC124412.3\| Mus musculus BAC clone RP24-274J3 from chromosome...	40	6.0
17	ref\|NM_002234.2\| Homo sapiens potassium voltage-gated channel, s...	40	6.0
18	gb\|CP000316.1\| Polaromonas sp. JS666, complete genome	40	6.0
19	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	40	6.0
20	emb\|BX927155.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	6.0
21	emb\|AL513014.9\| Mouse DNA sequence from clone RP23-461O24 on chr...	40	6.0
22	gb\|BC099666.1\| Homo sapiens potassium voltage-gated channel, sha...	40	6.0
23	gb\|BC099665.1\| Homo sapiens potassium voltage-gated channel, sha...	40	6.0
24	gb\|BC096358.1\| Homo sapiens potassium voltage-gated channel, sha...	40	6.0
25	gb\|BC096357.1\| Homo sapiens potassium voltage-gated channel, sha...	40	6.0
26	dbj\|AP001204.1\| Rhodococcus equi plasmid pREAT701 DNA, complete ...	40	6.0
27	dbj\|AK134538.1\| Mus musculus adult male medulla oblongata cDNA, ...	40	6.0
28	gb\|AC005906.1\| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell P...	40	6.0
29	gb\|AC093926.6\| Genomic sequence for Mus musculus, clone RP23-342...	40	6.0
30	dbj\|AK163880.1\| Mus musculus 0 day neonate cerebellum cDNA, RIKE...	40	6.0
31	dbj\|AK039271.1\| Mus musculus adult male spinal cord cDNA, RIKEN ...	40	6.0
32	dbj\|AK031928.1\| Mus musculus adult male medulla oblongata cDNA, ...	40	6.0
33	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
34	gb\|AF116907.2\|AF116907 Rhodococcus equi virulence plasmid, compl...	40	6.0
35	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	6.0
36	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.0
37	gb\|AC026237.4\|AC026237 Arabidopsis thaliana chromosome I BAC F17...	40	6.0
38	gb\|AC051629.3\|AC051629 Arabidopsis thaliana chromosome I BAC F6I...	40	6.0
39	dbj\|AP004027.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
40	dbj\|AK107692.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.0
41	emb\|CT573326.1\| Pseudomonas entomophila str. L48 chromosome,comp...	40	6.0
42	dbj\|AK122269.1\| Mus musculus mRNA for mKIAA0386 protein	40	6.0
43	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	6.0
44	gb\|AF017435.1\|AF017435 Methylobacterium extorquens methanol oxid...	40	6.0
45	emb\|BX072579.14\| Human DNA sequence from clone RP11-199F6 on chr...	40	6.0
46	gb\|M60451.1\|HUMVENHK2 Human voltage-gated potassium channel (HK2...	40	6.0
47	gb\|M83254.1\|HUMPOTCH Human cardiac potassium channel (KCNA5) mRN...	40	6.0
48	gb\|M55513.1\|HUMPCA Human potassium channel (HPCN1) mRNA, complet...	40	6.0

>ref|XM_476056.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3354

 Score =  107 bits (54), Expect = 3e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                        
Query: 315  ccctccagttgccccacatcctgagcattatgtacagcagagccatgcacacagtggccg 374
            |||||||||||| ||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 3112 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 3053

                                      
Query: 375  agacgatggcgatggccgccacgatg 400
            | |||| |||||||||||||||||||
Sbjct: 3052 acacgacggcgatggccgccacgatg 3027



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 224  accttccagtacttcccgtccccggcgcagcacttgcc 261
            |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 3212 accttccagtacttgccgtcgccggcgcaccacttgcc 3175



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  cgacgccgagctgtacttctc 189
            |||||||||||||||||||||
Sbjct: 3267 cgacgccgagctgtacttctc 3247

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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score =  107 bits (54), Expect = 3e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                         
Query: 315   ccctccagttgccccacatcctgagcattatgtacagcagagccatgcacacagtggccg 374
             |||||||||||| ||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 43712 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 43653

                                       
Query: 375   agacgatggcgatggccgccacgatg 400
             | |||| |||||||||||||||||||
Sbjct: 43652 acacgacggcgatggccgccacgatg 43627



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 224   accttccagtacttcccgtccccggcgcagcacttgcc 261
             |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 43812 accttccagtacttgccgtcgccggcgcaccacttgcc 43775



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   cgacgccgagctgtacttctc 189
             |||||||||||||||||||||
Sbjct: 43867 cgacgccgagctgtacttctc 43847

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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
              complete sequence
          Length = 136713

 Score =  107 bits (54), Expect = 3e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                          
Query: 315    ccctccagttgccccacatcctgagcattatgtacagcagagccatgcacacagtggccg 374
              |||||||||||| ||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 131927 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 131868

                                        
Query: 375    agacgatggcgatggccgccacgatg 400
              | |||| |||||||||||||||||||
Sbjct: 131867 acacgacggcgatggccgccacgatg 131842



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 224    accttccagtacttcccgtccccggcgcagcacttgcc 261
              |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 132027 accttccagtacttgccgtcgccggcgcaccacttgcc 131990



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    cgacgccgagctgtacttctc 189
              |||||||||||||||||||||
Sbjct: 132082 cgacgccgagctgtacttctc 132062

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  107 bits (54), Expect = 3e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                           
Query: 315     ccctccagttgccccacatcctgagcattatgtacagcagagccatgcacacagtggccg 374
               |||||||||||| ||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 4157233 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 4157174

                                         
Query: 375     agacgatggcgatggccgccacgatg 400
               | |||| |||||||||||||||||||
Sbjct: 4157173 acacgacggcgatggccgccacgatg 4157148



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 224     accttccagtacttcccgtccccggcgcagcacttgcc 261
               |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 4157333 accttccagtacttgccgtcgccggcgcaccacttgcc 4157296



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 169     cgacgccgagctgtacttctc 189
               |||||||||||||||||||||
Sbjct: 4157388 cgacgccgagctgtacttctc 4157368

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>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 52     acagccacccatacacaaaca 72
              |||||||||||||||||||||
Sbjct: 125559 acagccacccatacacaaaca 125539

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>gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, complete sequence
          Length = 202933

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 52   acagccacccatacacaaaca 72
            |||||||||||||||||||||
Sbjct: 1416 acagccacccatacacaaaca 1396

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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    cacccatacacaaacattttt 77
             |||||||||||||||||||||
Sbjct: 13462 cacccatacacaaacattttt 13442

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>gb|AC156798.2| Mus musculus BAC clone RP23-378B3 from chromosome 12, complete sequence
          Length = 220547

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    cacccatacacaaacattttt 77
             |||||||||||||||||||||
Sbjct: 16245 cacccatacacaaacattttt 16265

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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 379     gatggcgatggccgccacgatgccg 403
               ||||||||||||||||| |||||||
Sbjct: 2331962 gatggcgatggccgccaggatgccg 2331986

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>gb|AF508798.1| Homo sapiens lactoferrin gene, exons 1 through 6 and partial cds
          Length = 19899

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 52   acagccacccatacacaaaca 72
            |||||||||||||||||||||
Sbjct: 5171 acagccacccatacacaaaca 5191

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>ref|NM_101556.3| Arabidopsis thaliana unknown protein AT1G16950 mRNA, complete cds
          Length = 551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 61  catacacaaacatttttgagaaga 84
           |||||||||||||| |||||||||
Sbjct: 469 catacacaaacattcttgagaaga 446

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>ref|XM_522330.1| PREDICTED: Pan troglodytes similar to potassium voltage-gated
           channel, shaker-related subfamily, member 5; potassium
           channel protein; voltage-gated potassium channel;
           cardiac potassium channel; potassium channel 1;
           insulinoma and islet potassium channel; voltage-gated
           potass... (LOC466930), mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 736 ccgagacgatggcgatggcc 717

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     acgccgagctgtacttctcc 190
               ||||||||||||||||||||
Sbjct: 1697490 acgccgagctgtacttctcc 1697509

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     acgccgagctgtacttctcc 190
               ||||||||||||||||||||
Sbjct: 1527150 acgccgagctgtacttctcc 1527169

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     acgccgagctgtacttctcc 190
               ||||||||||||||||||||
Sbjct: 4391754 acgccgagctgtacttctcc 4391735

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>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence
          Length = 175945

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     tttttgagaagaaaccacag 92
              ||||||||||||||||||||
Sbjct: 168367 tttttgagaagaaaccacag 168386

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>ref|NM_002234.2| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5 (KCNA5), mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 998 ccgagacgatggcgatggcc 979

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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 377    acgatggcgatggccgccacgatg 400
              |||||||| |||||||||||||||
Sbjct: 438630 acgatggcaatggccgccacgatg 438653

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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    atggcgatggccgccacgatgccg 403
              |||||||||||||||| |||||||
Sbjct: 435952 atggcgatggccgccatgatgccg 435929

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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    cttccagtacttcccgtccc 245
              ||||||||||||||||||||
Sbjct: 133877 cttccagtacttcccgtccc 133858

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>emb|AL513014.9| Mouse DNA sequence from clone RP23-461O24 on chromosome 13 Contains the
             5' end of the gene for a novel protein similar to C6orf32
             (KIAA0386, DIFF48), complete sequence
          Length = 80460

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tgccgtgcacctccggctcc 286
             ||||||||||||||||||||
Sbjct: 11955 tgccgtgcacctccggctcc 11936

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>gb|BC099666.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117059
           IMAGE:40010236), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|BC099665.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117058
           IMAGE:40010234), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|BC096358.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117061
           IMAGE:40010240), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|BC096357.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117060
           IMAGE:40010237), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence
          Length = 80610

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   acgctgctctccgacgccga 177
             ||||||||||||||||||||
Sbjct: 54339 acgctgctctccgacgccga 54320

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>dbj|AK134538.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330405L09 product:neurotrophic
           tyrosine kinase, receptor, type 2, full insert sequence
          Length = 5528

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgccgtgcacctccggctcc 286
           ||||||||||||||||||||
Sbjct: 138 tgccgtgcacctccggctcc 119

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>gb|AC005906.1| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 185952

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    ccgagacgatggcgatggcc 391
              ||||||||||||||||||||
Sbjct: 108433 ccgagacgatggcgatggcc 108452

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>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence
          Length = 210913

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    tttttgagaagaaaccacag 92
             ||||||||||||||||||||
Sbjct: 59070 tttttgagaagaaaccacag 59089

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>dbj|AK163880.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230006N14 product:Diff48
           protein homolog [Homo sapiens], full insert sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgccgtgcacctccggctcc 286
           ||||||||||||||||||||
Sbjct: 143 tgccgtgcacctccggctcc 124

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>dbj|AK039271.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330012A19 product:hypothetical
           protein, full insert sequence
          Length = 2550

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgccgtgcacctccggctcc 286
           ||||||||||||||||||||
Sbjct: 172 tgccgtgcacctccggctcc 153

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>dbj|AK031928.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330500D04 product:DJ245M18.1
           (PLACENTAL PROTEIN DIFF40) (FRAGMENT) homolog [Homo
           sapiens], full insert sequence
          Length = 3370

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgccgtgcacctccggctcc 286
           ||||||||||||||||||||
Sbjct: 160 tgccgtgcacctccggctcc 141

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     cgatggccgccacgatgccg 403
               ||||||||||||||||||||
Sbjct: 7618328 cgatggccgccacgatgccg 7618347

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>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence
          Length = 80609

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   acgctgctctccgacgccga 177
             ||||||||||||||||||||
Sbjct: 54338 acgctgctctccgacgccga 54319

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     cttccagtacttcccgtccc 245
               ||||||||||||||||||||
Sbjct: 2606703 cttccagtacttcccgtccc 2606684

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     acgccgagctgtacttctcc 190
               ||||||||||||||||||||
Sbjct: 4111372 acgccgagctgtacttctcc 4111353

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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence,
            complete sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 61   catacacaaacatttttgagaaga 84
            |||||||||||||| |||||||||
Sbjct: 4459 catacacaaacattcttgagaaga 4482

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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    catacacaaacatttttgagaaga 84
             |||||||||||||| |||||||||
Sbjct: 51156 catacacaaacattcttgagaaga 51179

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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   cgatggccgccacgatgccg 403
             ||||||||||||||||||||
Sbjct: 41583 cgatggccgccacgatgccg 41602

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>dbj|AK107692.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C01, full
           insert sequence
          Length = 758

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 cgatggccgccacgatgccg 403
           ||||||||||||||||||||
Sbjct: 429 cgatggccgccacgatgccg 410

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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 381     tggcgatggccgccacgatg 400
               ||||||||||||||||||||
Sbjct: 3168558 tggcgatggccgccacgatg 3168539

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>dbj|AK122269.1| Mus musculus mRNA for mKIAA0386 protein
          Length = 5528

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgccgtgcacctccggctcc 286
           ||||||||||||||||||||
Sbjct: 139 tgccgtgcacctccggctcc 120

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 273     gcacctccggctcctcgccgtccg 296
               |||||||| |||||||||||||||
Sbjct: 1474348 gcacctccagctcctcgccgtccg 1474371

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>gb|AF017435.1|AF017435 Methylobacterium extorquens methanol oxidation genes, glmU-like gene,
            partial cds, and orfL2, orfL1, orfR genes, complete cds
          Length = 4301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  gccgtgcacctccggctcct 287
            ||||||||||||||||||||
Sbjct: 2197 gccgtgcacctccggctcct 2216

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>emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chromosome 13 Contains the
              GAS6 gene for growth arrest-specific 6, six novel genes and
              ten CpG islands, complete sequence
          Length = 170020

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ctccagttgccccacatcct 336
              ||||||||||||||||||||
Sbjct: 165401 ctccagttgccccacatcct 165420

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>gb|M60451.1|HUMVENHK2 Human voltage-gated potassium channel (HK2) mRNA, complete cds
          Length = 2118

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 945 ccgagacgatggcgatggcc 926

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>gb|M83254.1|HUMPOTCH Human cardiac potassium channel (KCNA5) mRNA, complete cds
          Length = 2755

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 925 ccgagacgatggcgatggcc 906

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>gb|M55513.1|HUMPCA Human potassium channel (HPCN1) mRNA, complete cds
          Length = 2867

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ccgagacgatggcgatggcc 391
           ||||||||||||||||||||
Sbjct: 997 ccgagacgatggcgatggcc 978


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,263,126
Number of Sequences: 3902068
Number of extensions: 3263126
Number of successful extensions: 70135
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69569
Number of HSP's gapped (non-prelim): 566
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result