ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPI16_SCHPO (O94380) GPI transamidase component PIG-T homolog pr... 29 2.3
2VGLX_EHV1K (P32514) Glycoprotein GX precursor 28 4.0
3VGLG_EHV1V (P84393) Glycoprotein G precursor 28 4.0
4VGLG_EHV1B (P28967) Glycoprotein G precursor 28 4.0
5VGLG_EHV4 (P32650) Glycoprotein G precursor 27 8.8
6STAT1_CAEEL (Q9NAD6) Signal transducer and activator of transcri... 27 8.8

>GPI16_SCHPO (O94380) GPI transamidase component PIG-T homolog precursor|
          Length = 545

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 42  DSTSNYQVPKLFPRVWSAVK*VATTRVQFFLSLTNYFLQTLNFQPLFQLYPSK 200
           DS++ YQ    +P  +S      +   Q+F SL    + T N  PLF+L P K
Sbjct: 149 DSSNTYQPQLSYPGSFSF-----SNNTQYFASLPQEDVCTENLSPLFKLLPCK 196



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>VGLX_EHV1K (P32514) Glycoprotein GX precursor|
          Length = 411

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 296 DGQTHSG-SFNGMEECLEDLLVGYVCVALI 382
           D  TH+G + NG+++C   L   Y C+ALI
Sbjct: 338 DDSTHTGGASNGIQDCDSQLKTVYACLALI 367



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>VGLG_EHV1V (P84393) Glycoprotein G precursor|
          Length = 411

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 296 DGQTHSG-SFNGMEECLEDLLVGYVCVALI 382
           D  TH+G + NG+++C   L   Y C+ALI
Sbjct: 338 DDSTHTGGASNGIQDCDSQLKTVYACLALI 367



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>VGLG_EHV1B (P28967) Glycoprotein G precursor|
          Length = 411

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 296 DGQTHSG-SFNGMEECLEDLLVGYVCVALI 382
           D  TH+G + NG+++C   L   Y C+ALI
Sbjct: 338 DDSTHTGGASNGIQDCDSQLKTVYACLALI 367



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>VGLG_EHV4 (P32650) Glycoprotein G precursor|
          Length = 405

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 296 DGQTHSGSFNGMEECLEDLLVGYVCVALI 382
           D  T  G  +G+++C   L   Y+C+ALI
Sbjct: 371 DSITTGGVLHGLQDCDNQLKTVYICLALI 399



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>STAT1_CAEEL (Q9NAD6) Signal transducer and activator of transcription 1|
          Length = 706

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 VLHITSTSNFSALSTARLIQEASTAWKNAWRIYSLAM 365
           V+ +   +NF+ +   +LI E   +WKNA ++  + M
Sbjct: 89  VIKLNDGTNFATMLQTQLIGEKLFSWKNAQKLAQIGM 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,721,519
Number of Sequences: 219361
Number of extensions: 887920
Number of successful extensions: 1919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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