ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009369.1| Triticum aestivum clone wlm96.pk028.e8:fis, full ... 250 3e-63
2ref|NM_191586.2| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
4dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
5dbj|AK121690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
6emb|AJ535079.1|OSA535079 Oryza sativa (japonica cultivar-group) ... 56 9e-05
7gb|AF532601.1| Triticum aestivum multidrug resistance associated... 48 0.023
8gb|U88179.1| Caenorhabditis elegans cosmid R57, complete sequence 42 1.4
9emb|X05651.1|GMGLY4MU Soybean mutant Gy(4) glycinin gene (null-a... 42 1.4
10dbj|AB004062.1| Glycine max A5A4B3 glycinin gene, complete cds 42 1.4
11gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome... 40 5.5
12ref|NM_016716.2| Mus musculus cullin 3 (Cul3), mRNA 40 5.5
13gb|AC166157.5| Mus musculus BAC clone RP24-193D9 from chromosome... 40 5.5
14gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequ... 40 5.5
15gb|AC091576.11| Homo sapiens chromosome 18, clone RP11-711I10, c... 40 5.5
16gb|AC091843.3| Homo sapiens chromosome 5 clone CTD-2185O23, comp... 40 5.5
17ref|XM_217454.3| PREDICTED: Rattus norvegicus cullin 3 (predicte... 40 5.5
18dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 5.5
19dbj|AK129174.1| Mus musculus mRNA for mKIAA0617 protein 40 5.5
20emb|AL137079.1|ATT27B3 Arabidopsis thaliana DNA chromosome 3, BA... 40 5.5
21gb|AF129738.1|AF129738 Mus musculus cullin 3 (Cul3) mRNA, comple... 40 5.5
22gb|BC027304.1| Mus musculus cullin 3, mRNA (cDNA clone MGC:28933... 40 5.5
23gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, compl... 40 5.5 
>gb|BT009369.1| Triticum aestivum clone wlm96.pk028.e8:fis, full insert mRNA sequence
          Length = 1328

 Score =  250 bits (126), Expect = 3e-63
 Identities = 206/230 (89%), Gaps = 2/230 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  ttcagctttatccttcaaaacatgtgaagttaccgtgcgagtattagtagcaccaacacc 240
            |||||| || ||||||| || |||| ||||||||||||| |||| |||||||||||||||
Sbjct: 1116 ttcagccttttccttcagaaaatgtaaagttaccgtgcgcgtatcagtagcaccaacacc 1057

                                                                        
Query: 241  gtggtagatc-gagagtacttcacatcacatctaccagtaatttttcggcattatcgacg 299
            |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 gtggcagatccgagagcacttcacatcacatctaccagtaatttttcggcattatcgacg 997

                                                                        
Query: 300  gccagactcattcaggaagcttcaacggcatggaagaa-tgcctggaggatctactcgtt 358
            |||||||||| ||| ||||| ||||||||||||||||| |  |||||||||||| |||||
Sbjct: 996  gccagactcactcaagaagcctcaacggcatggaagaatttgctggaggatctattcgtt 937

                                                              
Query: 359  ggctatgtatgcgtcgctctcatcgtgtactctgctacgagctttgagaa 408
            ||||| |  ||||||||||| ||||||||||| || || |||||||||||
Sbjct: 936  ggctacgcgtgcgtcgctctgatcgtgtactccgccacaagctttgagaa 887



 Score =  176 bits (89), Expect = 4e-41
 Identities = 142/159 (89%), Gaps = 3/159 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   ccacttcatttatttatccgggcatcagacagcacatca---aattaccaagtcccaaaa 71
            ||||||||||||||||||| || |||| |||| ||||||   |||||| ||| |||||||
Sbjct: 1293 ccacttcatttatttatcccggtatcacacagtacatcatcaaattactaagccccaaaa 1234

                                                                        
Query: 72   ctttttccgcgtgtatggtccgccgtaaagtaagtggctactaccagggttcagtttttt 131
            ||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||| | || 
Sbjct: 1233 ctttttcggcgtgtatggtccgccgtaaagtgagtgactactaccatggttcaggtcttg 1174

                                                   
Query: 132  ctatccttaactaactactttcttcaaacactaaacttt 170
            ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1173 ctatccttaacgaactactttcttcaaacactaaacttt 1135
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>ref|NM_191586.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5018

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 368  tgcgtcgctctcatcgtgtactctgctacgagctttgagaagag 411
            ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 4544 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagag 4501



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  atttttcggcattatcgacg 299
            ||||||||||||||||||||
Sbjct: 4625 atttttcggcattatcgacg 4606
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                           
Query: 368     tgcgtcgctctcatcgtgtactctgctacgagctttgagaagag 411
               ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 3809246 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagag 3809203



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 280     atttttcggcattatcgacg 299
               ||||||||||||||||||||
Sbjct: 3809327 atttttcggcattatcgacg 3809308
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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0089K24
          Length = 154137

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 368   tgcgtcgctctcatcgtgtactctgctacgagctttgagaagag 411
             ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 82788 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagag 82745



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   atttttcggcattatcgacg 299
             ||||||||||||||||||||
Sbjct: 82869 atttttcggcattatcgacg 82850
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>dbj|AK121690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F24, full
            insert sequence
          Length = 5017

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 368  tgcgtcgctctcatcgtgtactctgctacgagctttgagaagag 411
            ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 4543 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagag 4500



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  atttttcggcattatcgacg 299
            ||||||||||||||||||||
Sbjct: 4624 atttttcggcattatcgacg 4605
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>emb|AJ535079.1|OSA535079 Oryza sativa (japonica cultivar-group) mrp3 gene for MRP-like ABC
            transporter, exons 1-10
          Length = 5514

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 368  tgcgtcgctctcatcgtgtactctgctacgagctttgagaagag 411
            ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 5507 tgcgtcgatctcatcgtgtattccgctacgagcttggagaagag 5464
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>gb|AF532601.1| Triticum aestivum multidrug resistance associated protein MRP2 mRNA,
            complete cds
          Length = 4857

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 377  ctcatcgtgtactctgctacgagctttgagaa 408
            ||||||||||| |||||||| |||||||||||
Sbjct: 4688 ctcatcgtgtattctgctacaagctttgagaa 4657
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>gb|U88179.1| Caenorhabditis elegans cosmid R57, complete sequence
          Length = 12322

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 8    aactgaaccacttcatttatttatc 32
            |||| ||||||||||||||||||||
Sbjct: 3224 aactcaaccacttcatttatttatc 3248
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>emb|X05651.1|GMGLY4MU Soybean mutant Gy(4) glycinin gene (null-allele)
          Length = 3543

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  cacatctaccagtaatttttc 286
            |||||||||||||||||||||
Sbjct: 2454 cacatctaccagtaatttttc 2474
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>dbj|AB004062.1| Glycine max A5A4B3 glycinin gene, complete cds
          Length = 3680

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  cacatctaccagtaatttttc 286
            |||||||||||||||||||||
Sbjct: 2542 cacatctaccagtaatttttc 2562
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>gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome 1, complete sequence
          Length = 196764

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 143    taactactttcttcaaacactaaa 166
              |||| |||||||||||||||||||
Sbjct: 142986 taacaactttcttcaaacactaaa 143009
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>ref|NM_016716.2| Mus musculus cullin 3 (Cul3), mRNA
          Length = 2804

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 taactactttcttcaaacactaaa 166
           |||| |||||||||||||||||||
Sbjct: 438 taacaactttcttcaaacactaaa 461
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>gb|AC166157.5| Mus musculus BAC clone RP24-193D9 from chromosome 1, complete sequence
          Length = 160305

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 143    taactactttcttcaaacactaaa 166
              |||| |||||||||||||||||||
Sbjct: 133549 taacaactttcttcaaacactaaa 133526
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>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     atccgggcatcagacagcacatca 53
              |||||| |||||||||||||||||
Sbjct: 202051 atccggccatcagacagcacatca 202074
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>gb|AC091576.11| Homo sapiens chromosome 18, clone RP11-711I10, complete sequence
          Length = 162600

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   gttttttctatccttaacta 144
             ||||||||||||||||||||
Sbjct: 83615 gttttttctatccttaacta 83596
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>gb|AC091843.3| Homo sapiens chromosome 5 clone CTD-2185O23, complete sequence
          Length = 177056

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   gttttttctatccttaacta 144
             ||||||||||||||||||||
Sbjct: 31087 gttttttctatccttaacta 31068
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>ref|XM_217454.3| PREDICTED: Rattus norvegicus cullin 3 (predicted) (Cul3_predicted),
           mRNA
          Length = 4200

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 taactactttcttcaaacactaaa 166
           |||| |||||||||||||||||||
Sbjct: 666 taacaactttcttcaaacactaaa 689
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     tcaaccactttttcagcttt 189
               ||||||||||||||||||||
Sbjct: 3354628 tcaaccactttttcagcttt 3354647
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>dbj|AK129174.1| Mus musculus mRNA for mKIAA0617 protein
          Length = 4359

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 taactactttcttcaaacactaaa 166
           |||| |||||||||||||||||||
Sbjct: 801 taacaactttcttcaaacactaaa 824
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>emb|AL137079.1|ATT27B3 Arabidopsis thaliana DNA chromosome 3, BAC clone T27B3
          Length = 80450

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 258   cttcacatcacatctaccagtaat 281
             ||||||||||| ||||||||||||
Sbjct: 53618 cttcacatcacctctaccagtaat 53641
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>gb|AF129738.1|AF129738 Mus musculus cullin 3 (Cul3) mRNA, complete cds
          Length = 2426

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 taactactttcttcaaacactaaa 166
           |||| |||||||||||||||||||
Sbjct: 303 taacaactttcttcaaacactaaa 326
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>gb|BC027304.1| Mus musculus cullin 3, mRNA (cDNA clone MGC:28933 IMAGE:3981170),
           complete cds
          Length = 2804

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 taactactttcttcaaacactaaa 166
           |||| |||||||||||||||||||
Sbjct: 438 taacaactttcttcaaacactaaa 461
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>gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   agttttttctatccttaact 143
             ||||||||||||||||||||
Sbjct: 72821 agttttttctatccttaact 72802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,700,495
Number of Sequences: 3902068
Number of extensions: 3700495
Number of successful extensions: 62674
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62611
Number of HSP's gapped (non-prelim): 60
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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