ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
3dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
4dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
5dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
6dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
7dbj|AK072159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
8gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section ... 40 5.2
9emb|AL392184.7| Human DNA sequence from clone RP3-382B1 on chrom... 40 5.2
10emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on ch... 40 5.2
11gb|AC156611.10| Mus musculus chromosome 5, clone RP23-163P2, com... 40 5.2
12emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 i... 40 5.2
13dbj|AK140922.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.2
14gb|AC090950.3| Homo sapiens chromosome 3 clone RP11-44D5 map 3p,... 40 5.2
15dbj|AK090011.1| Mus musculus RCB-0464 Meth-A cDNA, RIKEN full-le... 40 5.2
16gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complet... 40 5.2
17gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome ... 40 5.2
18emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 ... 40 5.2
19gb|DQ355026.1| Homo sapiens caspase 8, apoptosis-related cystein... 40 5.2
20emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-8... 40 5.2
21gb|AC154200.1| Mus musculus BAC clone RP24-81G10 from 17, comple... 40 5.2
22gb|AC102056.17| Mus musculus chromosome 5, clone RP23-190H2, com... 40 5.2

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                     
Query: 354      gaaagatcagcaatgcat-atgtacatggtgcacagc 389
                |||||||||||| ||||| |||||||||||| |||||
Sbjct: 11505235 gaaagatcagcattgcattatgtacatggtgtacagc 11505271



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                    
Query: 354     gaaagatcagcaatgcat-atgtacatggtgcacagc 389
               |||||||||||| ||||| |||||||||||| |||||
Sbjct: 8114677 gaaagatcagcattgcattatgtacatggtgtacagc 8114641



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>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1034_C08
          Length = 154441

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                  
Query: 354   gaaagatcagcaatgcat-atgtacatggtgcacagc 389
             |||||||||||| ||||| |||||||||||| |||||
Sbjct: 59369 gaaagatcagcattgcattatgtacatggtgtacagc 59405



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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0624H09
          Length = 158719

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                 
Query: 354  gaaagatcagcaatgcat-atgtacatggtgcacagc 389
            |||||||||||| ||||| |||||||||||| |||||
Sbjct: 7040 gaaagatcagcattgcattatgtacatggtgtacagc 7004



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>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0592E11
          Length = 153734

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                   
Query: 354    gaaagatcagcaatgcat-atgtacatggtgcacagc 389
              |||||||||||| ||||| |||||||||||| |||||
Sbjct: 138446 gaaagatcagcattgcattatgtacatggtgtacagc 138410



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>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1114E07
          Length = 135511

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                   
Query: 354    gaaagatcagcaatgcat-atgtacatggtgcacagc 389
              |||||||||||| ||||| |||||||||||| |||||
Sbjct: 119224 gaaagatcagcattgcattatgtacatggtgtacagc 119260



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>dbj|AK072159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132J03, full
            insert sequence
          Length = 3523

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                 
Query: 354  gaaagatcagcaatgcat-atgtacatggtgcacagc 389
            |||||||||||| ||||| |||||||||||| |||||
Sbjct: 3026 gaaagatcagcattgcattatgtacatggtgtacagc 2990



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>gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete
              sequence
          Length = 260929

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aaagcaacaaacatagctgc 129
              ||||||||||||||||||||
Sbjct: 204833 aaagcaacaaacatagctgc 204852



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>emb|AL392184.7| Human DNA sequence from clone RP3-382B1 on chromosome 6 Contains part
            of the gene for phenylalanine-tRNA synthetase (FARS1),
            complete sequence
          Length = 42892

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  caccaacaacagaaaaccct 273
            ||||||||||||||||||||
Sbjct: 7580 caccaacaacagaaaaccct 7561



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>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part
              of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG
              island, complete sequence
          Length = 162575

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     cagagtgcagcccaagggcg 57
              ||||||||||||||||||||
Sbjct: 132033 cagagtgcagcccaagggcg 132014



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>gb|AC156611.10| Mus musculus chromosome 5, clone RP23-163P2, complete sequence
          Length = 200155

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    gaaaaggtaaaagcaacaaa 120
              ||||||||||||||||||||
Sbjct: 154534 gaaaaggtaaaagcaacaaa 154515



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>emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 in linkage group 12,
             complete sequence
          Length = 136645

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   taggtggggcaatggcacca 258
             ||||||||||||||||||||
Sbjct: 52065 taggtggggcaatggcacca 52084



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>dbj|AK140922.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130072C02 product:unclassifiable, full
            insert sequence
          Length = 4219

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aaaggtaaaagcaacaaaca 122
            ||||||||||||||||||||
Sbjct: 3333 aaaggtaaaagcaacaaaca 3314



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>gb|AC090950.3| Homo sapiens chromosome 3 clone RP11-44D5 map 3p, complete sequence
          Length = 199288

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    gtaaaagcaacaaacatagc 126
              ||||||||||||||||||||
Sbjct: 148821 gtaaaagcaacaaacatagc 148840



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>dbj|AK090011.1| Mus musculus RCB-0464 Meth-A cDNA, RIKEN full-length enriched
            library, clone:G430059M05 product:RIKEN cDNA 2010110K24
            gene, full insert sequence
          Length = 1597

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aaaggtaaaagcaacaaaca 122
            ||||||||||||||||||||
Sbjct: 1467 aaaggtaaaagcaacaaaca 1448



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>gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complete sequence
          Length = 181150

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      gcaaccactttcagttttta 27
              ||||||||||||||||||||
Sbjct: 135952 gcaaccactttcagttttta 135971



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>gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome 18, complete sequence
          Length = 211149

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ctaatttctgtccaaagtca 198
              ||||||||||||||||||||
Sbjct: 127159 ctaatttctgtccaaagtca 127140



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>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12,
              complete sequence
          Length = 203958

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    taggtggggcaatggcacca 258
              ||||||||||||||||||||
Sbjct: 152628 taggtggggcaatggcacca 152609



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>gb|DQ355026.1| Homo sapiens caspase 8, apoptosis-related cysteine peptidase (CASP8)
             gene, complete cds
          Length = 57727

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gcaaccactttcagttttta 27
             ||||||||||||||||||||
Sbjct: 49537 gcaaccactttcagttttta 49518



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>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210869

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    aggtggggcaatggcaccaa 259
              ||||||||||||||||||||
Sbjct: 174610 aggtggggcaatggcaccaa 174629



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>gb|AC154200.1| Mus musculus BAC clone RP24-81G10 from 17, complete sequence
          Length = 216721

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    aaaggtaaaagcaacaaaca 122
              ||||||||||||||||||||
Sbjct: 122665 aaaggtaaaagcaacaaaca 122646



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>gb|AC102056.17| Mus musculus chromosome 5, clone RP23-190H2, complete sequence
          Length = 184495

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gaaaaggtaaaagcaacaaa 120
             ||||||||||||||||||||
Sbjct: 37005 gaaaaggtaaaagcaacaaa 36986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,215,013
Number of Sequences: 3902068
Number of extensions: 3215013
Number of successful extensions: 58577
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 58524
Number of HSP's gapped (non-prelim): 56
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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