>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated protein|
            130) (SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b
            130 kDa subunit) (STAF130)
          Length = 1217

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 406  ADELXRTPGEILKKLEDIRNK 344
            ++EL RTP E+ KKLEDIR +
Sbjct: 1194 SEELDRTPPEVSKKLEDIRTR 1214

>PHF20_MOUSE (Q8BLG0) PHD finger protein 20 (Hepatocellular carcinoma-associated|
           antigen 58 homolog)
          Length = 1010

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 82  NCPFLFESTRQTEPVSTMSTVHQIRRLWVVGPVHSVD 192
           NC  + E+T +TEPVS ++ V ++  + V   +  VD
Sbjct: 403 NCKSMGENTMKTEPVSPLAEVQEVSTVEVPNTLKKVD 439

>GDA1_KLULA (Q9HEM6) Guanosine-diphosphatase (EC 3.6.1.42) (GDPase)|
          Length = 522

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 371 EEAGRHQKQNHLGSSNSMNESDCGMRLSSPHRCKIFISSPSTAG---VWRFSFDTTQHSI 201
           + A  H  QN    SNS+++S C    +  H+  + I + ST     V+ F   T   ++
Sbjct: 69  QTAKDHTSQNLESGSNSLSKSQC----TEGHKYVVMIDAGSTGSRVHVYEFDVCTQPPTL 124

Query: 200 IHESTEWTGP 171
           I+E+ E   P
Sbjct: 125 INETFEMLKP 134

>PGTB_SALTY (P37433) Phosphoglycerate transport system sensor protein pgtB (EC|
           2.7.13.3)
          Length = 668

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 212 VLCQKKNATHRLYWVRR*IFYTDEDLTVAFHSQIHSCYSMTLDDFVSDVFQLLQDFTWSS 391
           +L +  NA + ++ VR  +            S++ +      DDF +++  L+QDFTW  
Sbjct: 126 LLAELDNALYNMFLVREKV------------SELSARIDWLHDDFTTELNSLVQDFTWQQ 173

Query: 392 XKLI 403
             L+
Sbjct: 174 GTLL 177

>RIR1_CHLPN (Q9Z6S5) Ribonucleoside-diphosphate reductase alpha subunit (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 1044

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 302 HSQIHSCYSMTLDDFVSDVFQLLQD 376
           HSQ+ SCY  T+ D +S +++++ D
Sbjct: 450 HSQLSSCYLSTVKDDLSHIYKVISD 474

>RPN2_MOUSE (Q9DBG6) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 63 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin II) (RPN-II)
          Length = 631

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -3

Query: 269 IFISSPSTAGVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 129
           +F++ P    V++F  DT++  I  +S   T          T  N  +W   D+V
Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502

>RIB2_RAT (P25235) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 63 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin II) (RPN-II)
          Length = 631

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -3

Query: 269 IFISSPSTAGVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 129
           +F++ P    V++F  DT++  I  +S   T          T  N  +W   D+V
Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502

>RIB2_HUMAN (P04844) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 63 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin II) (RPN-II) (RIBIIR)
          Length = 631

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -3

Query: 269 IFISSPSTAGVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 129
           +F++ P    V++F  DT++  I  +S   T          T  N  +W   D+V
Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502

>NRX4_DROME (Q94887) Neurexin-4 precursor (Neurexin IV)|
          Length = 1284

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = -3

Query: 344 NHLGSSNSMNES-DCGMRLSSPHRCKIFISSPSTAGVWR-FSFDTTQHSIIHESTEWTGP 171
           N L     +N S  C  RLS   R     +SPS AG +R FS+  ++H+       W G 
Sbjct: 659 NQLQIEALLNRSHSCWQRLSYSCRSSRLFNSPSEAGNFRPFSWWISRHN--QPMDYWAGA 716

Query: 170 TTHNRRIWCTV--DIVDTGSVCLVDSN 96
              +R+  C +     D    C  DSN
Sbjct: 717 LPGSRKCECGILGKCHDPTKWCNCDSN 743

>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)|
           (RNA polymerase I subunit 2)
          Length = 1234

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 311 SDCGMRLSSPHRCKIFISSPSTAGVWRFSFDTTQHSIIHESTEWTGPTTHNRRI--WCT 141
           S CG+     H+CKI   S   + + R +F+    +I   +T  +     + RI  WCT
Sbjct: 543 SPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVNISSAATSESVVVMLDGRIVGWCT 601

>RIR1_CHLMU (Q9PL93) Ribonucleoside-diphosphate reductase alpha subunit (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 1047

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 302 HSQIHSCYSMTLDDFVSDVFQLLQD 376
           HSQ+ SCY  T+ D + ++++++ D
Sbjct: 452 HSQLSSCYLSTVQDDLVNIYKVISD 476

>RIR1_CHLTR (O84834) Ribonucleoside-diphosphate reductase alpha subunit (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 1047

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 302 HSQIHSCYSMTLDDFVSDVFQLLQD 376
           HSQ+ SCY  T+ D + ++++++ D
Sbjct: 452 HSQLSSCYLSTVQDNLVNIYKVIAD 476

>POLN_ONNVS (O90368) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.
          Length = 2513

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 238  CGVFLLTQHSIP*FMSQRSGQDPQPIIVGSGVPXXXXXLAQFAL*IQTRTDN*MAVP 68
            C   LL  H++P  +S R+ +    II    +P      AQF   +Q+ TD  + VP
Sbjct: 1638 CSKALLFDHNVPSRVSPRTYRPADEIIQTPQIPTEACQDAQF---VQSITDEAVPVP 1691

>PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carcinoma-associated|
           antigen 58) (Glioma-expressed antigen 2) (Transcription
           factor TZP) (Novel zinc finger protein)
          Length = 1012

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 82  NCPFLFESTRQTEPVSTMSTVHQIRRLWVVGPVHSVD 192
           NCP + E+T +TEP S +  + +I  + V       D
Sbjct: 400 NCPSMGENTMKTEPTSPLVELQEISTVEVTNTFKKTD 436

>ZN131_PONPY (Q5RAU9) Zinc finger protein 131|
          Length = 589

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/70 (25%), Positives = 38/70 (54%)
 Frame = +1

Query: 100 ESTRQTEPVSTMSTVHQIRRLWVVGPVHSVDS*IMECCVVSKEKRHTPAVLGEEINILHR 279
           E+  QTEPV++M+ + Q+ ++ V+ P+  V    ++   V+ E+ H   + G +++  H 
Sbjct: 424 ETRVQTEPVTSMTIIEQVGKVHVL-PLLQVQ---VDSAQVTVEQVHPDLLQGSQVHDSHM 479

Query: 280 *GLDSRIPQS 309
             L  ++  S
Sbjct: 480 SELPEQVQVS 489

>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding|
            cassette sub-family C member 6)
          Length = 1498

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = +2

Query: 2    HQTSSVTSGQITVVETGTERLLWYSHLIVRSCLNLQGKLSQCQQCQRYTRSDDYGLWVLS 181
            H ++ +    ++     T+ L W    +VRS  +L+  +   ++ Q Y R      W L 
Sbjct: 1191 HLSAGLVGFSVSAALQVTQTLQW----VVRSWTDLENSMVAVERVQDYARIPKEAPWRLP 1246

Query: 182  TPLTHELW 205
            T     LW
Sbjct: 1247 TCAAQPLW 1254

>YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragment)|
          Length = 373

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = -3

Query: 350 KQNHLGSSNSMNESDCGMRLSSPHRCKIFISSPSTAGVWRFSFDTTQHSIIHESTEWTGP 171
           KQ+    S++M+ +D     SSP    +  SS +T+ +  FSF  +Q S    +T  + P
Sbjct: 148 KQSSSPQSSTMSSTD-----SSPTSSSLSASSTTTSSISSFSF--SQSSSSSSTTSSSTP 200

Query: 170 TTHNRRIWCTV 138
           ++ + RI  +V
Sbjct: 201 SSESVRITTSV 211


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,271,022
Number of Sequences: 219361
Number of extensions: 1213663
Number of successful extensions: 2953
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2953
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)