ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104666.1| Zea mays PCO121749 mRNA sequence 94 4e-16
2ref|XM_464062.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
6dbj|AK068480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7ref|NM_177419.1| Rattus norvegicus X-ray repair complementing de... 42 1.4
8gb|AC130528.4| Mus musculus BAC clone RP23-122M14 from chromosom... 42 1.4
9gb|BC061576.1| Rattus norvegicus X-ray repair complementing defe... 42 1.4
10ref|NM_009533.1| Mus musculus X-ray repair complementing defecti... 42 1.4
11gb|BC051660.1| Mus musculus X-ray repair complementing defective... 42 1.4
12gb|AF039044.1| Caenorhabditis elegans cosmid F48G7, complete seq... 42 1.4
13emb|X66323.1|MMP80KUAG M.musculus mRNA for p80 Ku autoantigen 42 1.4
14gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, com... 42 1.4
15gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, comp... 42 1.4
16dbj|AK165470.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 1.4
17dbj|AK168913.1| Mus musculus 17 days embryo heart cDNA, RIKEN fu... 42 1.4
18dbj|AK169838.1| Mus musculus 2 days neonate thymus thymic cells ... 42 1.4
19dbj|AK167312.1| Mus musculus 14 days embryo liver cDNA, RIKEN fu... 42 1.4
20dbj|AK010416.1| Mus musculus ES cells cDNA, RIKEN full-length en... 42 1.4
21dbj|AK081633.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.4
22gb|BC029218.1| Mus musculus X-ray repair complementing defective... 42 1.4
23ref|NM_070874.1| Caenorhabditis elegans Serpentine Receptor, cla... 42 1.4
24dbj|AK089944.1| Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN ... 42 1.4
25gb|AC004860.1|AC004860 Homo sapiens PAC clone RP4-691L7 from 7, ... 42 1.4
26dbj|AK182445.1| Mus musculus cDNA, clone:Y0G0122A02, strand:minu... 42 1.4
27gb|AC114905.10| Mus musculus chromosome 1, clone RP24-127K21, co... 42 1.4
28gb|AF166486.1|AF166486 Mus musculus Ku autoantigen (Ku80) mRNA, ... 42 1.4
29dbj|AB066103.1| Rattus norvegicus mRNA for Xrcc5, partial cds 42 1.4
30emb|X63625.1|DCCOXII D.carota mitochondrion coxII gene for cytoc... 40 5.5
31gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete se... 40 5.5
32gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, co... 40 5.5
33gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 40 5.5
34gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occlu... 40 5.5
35gb|AC154435.2| Mus musculus BAC clone RP24-188N22 from chromosom... 40 5.5
36emb|AL731795.11| Mouse DNA sequence from clone RP23-123M13 on ch... 40 5.5 
>gb|AY104666.1| Zea mays PCO121749 mRNA sequence
          Length = 827

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 336 tagatgattttgtttctgatgtcttccagcttcttcaggatttcacctggagttcggnca 395
           |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| | | 
Sbjct: 352 tagatgattttgttcctgatgtcttctagcttcttcaggatttcacccggagttctgtcc 293

                            
Query: 396 agctcatcggcnatctt 412
           |||||||| || |||||
Sbjct: 292 agctcatcagcaatctt 276
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>ref|XM_464062.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3705

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 337  agatgattttgtttctgatgtcttccagcttcttcaggatttcacctggagttcggncaa 396
            |||| |||||||| || ||||| ||||||||||||||||||||||| ||||||| | | |
Sbjct: 3703 agataattttgttcctaatgtcctccagcttcttcaggatttcaccaggagttctgtcga 3644

                            
Query: 397  gctcatcggcnatctt 412
            | |||||||| |||||
Sbjct: 3643 gttcatcggcaatctt 3628
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                           
Query: 337     agatgattttgtttctgatgtcttccagcttcttcaggatttcacctggagttcggncaa 396
               |||| |||||||| || ||||| ||||||||||||||||||||||| ||||||| | | |
Sbjct: 1983085 agataattttgttcctaatgtcctccagcttcttcaggatttcaccaggagttctgtcga 1983026

                               
Query: 397     gctcatcggcnatctt 412
               | |||||||| |||||
Sbjct: 1983025 gttcatcggcaatctt 1983010
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 337   agatgattttgtttctgatgtcttccagcttcttcaggatttcacctggagttcggncaa 396
             |||| |||||||| || ||||| ||||||||||||||||||||||| ||||||| | | |
Sbjct: 33293 agataattttgttcctaatgtcctccagcttcttcaggatttcaccaggagttctgtcga 33234

                             
Query: 397   gctcatcggcnatctt 412
             | |||||||| |||||
Sbjct: 33233 gttcatcggcaatctt 33218
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                          
Query: 337    agatgattttgtttctgatgtcttccagcttcttcaggatttcacctggagttcggncaa 396
              |||| |||||||| || ||||| ||||||||||||||||||||||| ||||||| | | |
Sbjct: 122646 agataattttgttcctaatgtcctccagcttcttcaggatttcaccaggagttctgtcga 122587

                              
Query: 397    gctcatcggcnatctt 412
              | |||||||| |||||
Sbjct: 122586 gttcatcggcaatctt 122571
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>dbj|AK068480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153O19, full
            insert sequence
          Length = 3074

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                        
Query: 337  agatgattttgtttctgatgtcttccagcttcttcaggatttcacctggagttcggncaa 396
            |||| |||||| | || ||||| ||||||||||||||||||||||| ||||||| | | |
Sbjct: 2576 agataattttgctcctaatgtcctccagcttcttcaggatttcaccaggagttctgtcga 2517

                            
Query: 397  gctcatcggcnatctt 412
            | |||||||| |||||
Sbjct: 2516 gttcatcggcaatctt 2501
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>ref|NM_177419.1| Rattus norvegicus X-ray repair complementing defective repair in
           Chinese hamster cells 5 (Xrcc5), mRNA
          Length = 2548

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 395 gattttgtttccgatgtcttccagc 371
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>gb|AC130528.4| Mus musculus BAC clone RP23-122M14 from chromosome 6, complete sequence
          Length = 208738

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    gaaacaggtacagaaagacta 64
             |||||||||||||||||||||
Sbjct: 65572 gaaacaggtacagaaagacta 65552
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>gb|BC061576.1| Rattus norvegicus X-ray repair complementing defective repair in
           Chinese hamster cells 5, mRNA (cDNA clone MGC:72979
           IMAGE:6887693), complete cds
          Length = 2548

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 395 gattttgtttccgatgtcttccagc 371
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>ref|NM_009533.1| Mus musculus X-ray repair complementing defective repair in Chinese
           hamster cells 5 (Xrcc5), mRNA
          Length = 2455

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 321 gattttgtttccgatgtcttccagc 297
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>gb|BC051660.1| Mus musculus X-ray repair complementing defective repair in Chinese
           hamster cells 5, mRNA (cDNA clone MGC:60964
           IMAGE:30008031), complete cds
          Length = 2500

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 360 gattttgtttccgatgtcttccagc 336
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>gb|AF039044.1| Caenorhabditis elegans cosmid F48G7, complete sequence
          Length = 31549

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   tgtgttgtgtcaaaagaaaaa 231
             |||||||||||||||||||||
Sbjct: 25190 tgtgttgtgtcaaaagaaaaa 25210
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>emb|X66323.1|MMP80KUAG M.musculus mRNA for p80 Ku autoantigen
          Length = 2515

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 321 gattttgtttccgatgtcttccagc 297
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>gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, complete sequence
          Length = 173677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 84     ttgtccgttcttgtttgaatctaca 108
              |||||| ||||||||||||||||||
Sbjct: 135026 ttgtccattcttgtttgaatctaca 135050
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>gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, complete sequence
          Length = 193872

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 84     ttgtccgttcttgtttgaatctaca 108
              |||||| ||||||||||||||||||
Sbjct: 189344 ttgtccattcttgtttgaatctaca 189320
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>dbj|AK165470.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:F530012I09 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2523

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 388 gattttgtttccgatgtcttccagc 364
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>dbj|AK168913.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:I920064P22 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285
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>dbj|AK169838.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430034L10
           product:X-ray repair complementing defective repair in
           Chinese hamster cells 5, full insert sequence
          Length = 2140

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285
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>dbj|AK167312.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
           library, clone:I530003F18 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285
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>dbj|AK010416.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410005I23 product:X-ray repair complementing
           defective repair in Chinese hamster cells 5, full insert
           sequence
          Length = 866

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285
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>dbj|AK081633.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130057J09 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2251

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 421 gattttgtttccgatgtcttccagc 397
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>gb|BC029218.1| Mus musculus X-ray repair complementing defective repair in Chinese
           hamster cells 5, mRNA (cDNA clone IMAGE:2647262),
           partial cds
          Length = 2446

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 292 gattttgtttccgatgtcttccagc 268
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>ref|NM_070874.1| Caenorhabditis elegans Serpentine Receptor, class J family member
           (srj-37) (srj-37) mRNA, complete cds
          Length = 1002

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 211 tgtgttgtgtcaaaagaaaaa 231
           |||||||||||||||||||||
Sbjct: 927 tgtgttgtgtcaaaagaaaaa 947
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>dbj|AK089944.1| Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN full-length
           enriched library, clone:G430020C23 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 417 gattttgtttccgatgtcttccagc 393
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>gb|AC004860.1|AC004860 Homo sapiens PAC clone RP4-691L7 from 7, complete sequence
          Length = 136225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 84    ttgtccgttcttgtttgaatctaca 108
             |||||| ||||||||||||||||||
Sbjct: 46952 ttgtccattcttgtttgaatctaca 46928
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>dbj|AK182445.1| Mus musculus cDNA, clone:Y0G0122A02, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000027379, based on BLAT search
          Length = 434

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 283 gattttgtttccgatgtcttccagc 259
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>gb|AC114905.10| Mus musculus chromosome 1, clone RP24-127K21, complete sequence
          Length = 168918

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 341   gattttgtttctgatgtcttccagc 365
             ||||||||||| |||||||||||||
Sbjct: 90697 gattttgtttccgatgtcttccagc 90673
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>gb|AF166486.1|AF166486 Mus musculus Ku autoantigen (Ku80) mRNA, complete cds
          Length = 2257

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 315 gattttgtttccgatgtcttccagc 291
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>dbj|AB066103.1| Rattus norvegicus mRNA for Xrcc5, partial cds
          Length = 2100

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 gattttgtttctgatgtcttccagc 365
           ||||||||||| |||||||||||||
Sbjct: 149 gattttgtttccgatgtcttccagc 125
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>emb|X63625.1|DCCOXII D.carota mitochondrion coxII gene for cytochrome c oxidase subunit II
          Length = 3532

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 348  tttctgatgtcttccagcttcttcaggatttc 379
            |||||||  |||||||||||||||| ||||||
Sbjct: 2759 tttctgagttcttccagcttcttcatgatttc 2790
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>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence
          Length = 146386

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   atgattttgtttctgatgtc 358
             ||||||||||||||||||||
Sbjct: 68157 atgattttgtttctgatgtc 68176
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>gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, complete sequence
          Length = 188117

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   gattttgtttctgatgtctt 360
             ||||||||||||||||||||
Sbjct: 97367 gattttgtttctgatgtctt 97348
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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   tgttgtgtcaaaagaaaaac 232
             ||||||||||||||||||||
Sbjct: 42575 tgttgtgtcaaaagaaaaac 42556
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>gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1) gene,
             complete cds
          Length = 125625

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   gattttgtttctgatgtctt 360
             ||||||||||||||||||||
Sbjct: 81935 gattttgtttctgatgtctt 81954
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>gb|AC154435.2| Mus musculus BAC clone RP24-188N22 from chromosome 14, complete sequence
          Length = 173318

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    cttgacagtcgcattccaca 305
              ||||||||||||||||||||
Sbjct: 124495 cttgacagtcgcattccaca 124476
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>emb|AL731795.11| Mouse DNA sequence from clone RP23-123M13 on chromosome 2, complete
              sequence
          Length = 177282

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    tgatgtcttccagcttcttc 371
              ||||||||||||||||||||
Sbjct: 166922 tgatgtcttccagcttcttc 166941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,155,556
Number of Sequences: 3902068
Number of extensions: 4155556
Number of successful extensions: 71765
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71682
Number of HSP's gapped (non-prelim): 83
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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