ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44c05 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/64 (43%), Positives = 36/64 (56%) Frame = -2 Query: 458 LGMQPCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 LGMQPCE ++ V N SH L+GVY GG +LVR L+ V M++ VRS + Sbjct: 805 LGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSKERTP 862 Query: 278 SDKI 267 D I Sbjct: 863 VDVI 866
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 45.4 bits (106), Expect = 7e-05 Identities = 26/64 (40%), Positives = 36/64 (56%) Frame = -2 Query: 458 LGMQPCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 LGMQPCE ++ V N SH L+G++ GG +LVR L+ V M++ VRS + Sbjct: 805 LGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSKERTP 862 Query: 278 SDKI 267 D I Sbjct: 863 VDVI 866
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 45.1 bits (105), Expect = 9e-05 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = -2 Query: 461 ILGMQPCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLS-GPKEVAMKLAVRSDDP 285 ILG+ PCE ++ V H LSGV+ GG VL + + + +AM + ++S++P Sbjct: 800 ILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEP 859 Query: 284 EVSDKI 267 V+D + Sbjct: 860 LVADLV 865
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/57 (40%), Positives = 32/57 (56%) Frame = -2 Query: 458 LGMQPCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDD 288 LGM PCE ++ V N +H LL+GV+ GG +LVR L V M++ RS + Sbjct: 808 LGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARSSE 862
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = -2 Query: 458 LGMQPCEGTEVVSSNARSHVCLLSGVYIGGVKVLVR 351 LGM PCE ++ V N +H LL+GV+ GG +LVR Sbjct: 808 LGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 32.7 bits (73), Expect = 0.47 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = -2 Query: 461 ILGMQPCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKE-VAMKLAVRSDDP 285 +L MQP EGTE ++ HV LSG + G KVL + S E + +K+ R + Sbjct: 836 LLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIARGE-- 892 Query: 284 EVSDKIHEIVASG 246 SD E+V G Sbjct: 893 --SDSSVELVVGG 903
>ERA_DEIRA (Q9RWM0) GTP-binding protein era homolog| Length = 311 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 286 GSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTPDSRHTCDLALLDT 426 G S L +F+ T + P SP TR IYT D+R L +DT Sbjct: 29 GKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIYTLDNR---QLIFVDT 72
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGTITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HX (P12566) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HV (P12564) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HT (P12562) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3B (P06167) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 277 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIY----TPDSRHTCDLALLDT 426 +T G D+ S+ +G ++ N +L P + D+R +C LALL+T Sbjct: 210 ITQGCQDIGKSYQVLQIGIITINSDLVPDLNPRVTHTFNIDDNRKSCSLALLNT 263
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 386 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 386 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 386 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 386 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 386 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 386 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 279 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>CLN3_MACFA (Q60HH0) Protein CLN3 (Battenin)| Length = 438 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 241 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 354 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213
>CLN3_HUMAN (Q13286) Protein CLN3 (Battenin) (Batten disease protein)| Length = 438 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 241 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 354 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213
>HUNB_CLOAL (O96785) Protein hunchback (Fragment)| Length = 485 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +2 Query: 290 HLTLPPASSPLPWAHLVRMITSQEPSRPLYTHQTAGIHAIL 412 H+ PP+S L + I Q PS PL+ + H IL Sbjct: 263 HVPTPPSSQALAMLPNLANIFQQSPSMPLFPYLNLNFHHIL 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,318,688 Number of Sequences: 219361 Number of extensions: 1193665 Number of successful extensions: 3076 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3076 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
