ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC006733.2| Caenorhabditis elegans cosmid Y32H12A, complete sequence Length = 58777 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 97 aatgaaaaataaatgagagaacaca 121 ||||||||||||||||||||||||| Sbjct: 23913 aatgaaaaataaatgagagaacaca 23937
>gb|AC073058.4| Homo sapiens BAC clone RP11-115H23 from 2, complete sequence Length = 44506 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 100 gaaaaataaatgagagaacacaaa 123 |||||||||||||||||||||||| Sbjct: 32263 gaaaaataaatgagagaacacaaa 32240
>gb|AC129555.29| Mus musculus chromosome 5, clone RP24-90F19, complete sequence Length = 242141 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 336 tgggtctcttcttgcttgttggc 358 ||||||||||||||||||||||| Sbjct: 81175 tgggtctcttcttgcttgttggc 81197
>ref|XM_732592.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000302.03.0) partial mRNA Length = 855 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 24 tttatatgtttagcataattacaaaa 49 ||||||| |||||||||||||||||| Sbjct: 503 tttatatttttagcataattacaaaa 478
>emb|AL356476.13| Human DNA sequence from clone RP11-655H13 on chromosome 10 Contains a mitogen-activated protein kinase-activated protein kinase 5 (MAPKAPK5) pseudogene and a novel gene, complete sequence Length = 184510 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 caatgaaaaataaatgagagaa 117 |||||||||||||||||||||| Sbjct: 132961 caatgaaaaataaatgagagaa 132982
>emb|AL021327.1|HS124O9 Human DNA sequence from clone RP1-124O9 on chromosome 6q21 Contains an HSJ2 (heat shock protein, DNAJ-like 2 (HDJ2)) pseudogene, complete sequence Length = 108534 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 aataaatgagagaacacaaaat 125 |||||||||||||||||||||| Sbjct: 72735 aataaatgagagaacacaaaat 72756
>gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194589 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 tgttgctgctgctgcttggcag 217 |||||||||||||||||||||| Sbjct: 154107 tgttgctgctgctgcttggcag 154128
>gb|AC091228.3| Drosophila melanogaster 3L BAC RP98-10L9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156142 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggcag 217 |||||||||||||||||||||| Sbjct: 90278 tgttgctgctgctgcttggcag 90257
>ref|NM_168179.1| Drosophila melanogaster CG32394-PA (CG32394) mRNA, complete cds Length = 8274 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggcag 217 |||||||||||||||||||||| Sbjct: 7087 tgttgctgctgctgcttggcag 7066
>gb|AY060704.1| Drosophila melanogaster GH14591 full length cDNA Length = 2054 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggcag 217 |||||||||||||||||||||| Sbjct: 847 tgttgctgctgctgcttggcag 826
>gb|AC137517.6| Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105622 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 atgaaaaataaatgagagaaca 119 |||||||||||||||||||||| Sbjct: 31835 atgaaaaataaatgagagaaca 31814
>gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24 of 83 of the complete sequence Length = 274289 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 tgttgctgctgctgcttggcag 217 |||||||||||||||||||||| Sbjct: 81695 tgttgctgctgctgcttggcag 81716
>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete sequence Length = 103129 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 407 ctgcttgttcatctaccacatgagtt 432 ||||||||||| |||||||||||||| Sbjct: 3243 ctgcttgttcacctaccacatgagtt 3218
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 agagaacacaaaataatgaagctca 136 |||||||| |||||||||||||||| Sbjct: 1684820 agagaacaaaaaataatgaagctca 1684844
>gb|AC147021.3| Pan troglodytes BAC clone RP43-85B14 from 7, complete sequence Length = 159960 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tggttttatatgtttagcata 40 ||||||||||||||||||||| Sbjct: 37664 tggttttatatgtttagcata 37684
>ref|XM_954076.1| Neurospora crassa OR74A hypothetical protein (NCU09225.1) partial mRNA Length = 1083 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 acgagtgttgctgctgctgct 211 ||||||||||||||||||||| Sbjct: 1051 acgagtgttgctgctgctgct 1071
>ref|XM_331616.1| Neurospora crassa OR74A hypothetical protein (NCU09225.1) partial mRNA Length = 1083 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 acgagtgttgctgctgctgct 211 ||||||||||||||||||||| Sbjct: 1051 acgagtgttgctgctgctgct 1071
>gb|AC006317.3| Homo sapiens PAC clone RP4-715F13 from 7, complete sequence Length = 145878 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 tggttttatatgtttagcata 40 ||||||||||||||||||||| Sbjct: 141968 tggttttatatgtttagcata 141948
>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete sequence Length = 155365 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 aaaataatgaagctcaactgt 141 ||||||||||||||||||||| Sbjct: 37135 aaaataatgaagctcaactgt 37115
>emb|AL591686.10| Human DNA sequence from clone RP11-561I11 on chromosome 1 Contains the 3' end of a novel gene (FLJ40773) and two novel genes, complete sequence Length = 175463 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 tgctgctgctgcttggcagaa 219 ||||||||||||||||||||| Sbjct: 19144 tgctgctgctgcttggcagaa 19164
>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK), the C9orf19 gene for ,chromosome 9 open reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (LCA), the gene for UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands, complete sequence Length = 191436 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 197 gttgctgctgctgcttggcagaagg 221 |||||||||||||||| |||||||| Sbjct: 66811 gttgctgctgctgctttgcagaagg 66835
>emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001 Length = 281116 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaataa 127 ||||||||||||||||||||| Sbjct: 248401 aaatgagagaacacaaaataa 248381
>gb|AC010108.6| Drosophila melanogaster 3L BAC RP98-23K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167187 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 agtgttgctgctgctgcttgg 214 ||||||||||||||||||||| Sbjct: 97959 agtgttgctgctgctgcttgg 97979
>gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence Length = 118935 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaataa 127 ||||||||||||||||||||| Sbjct: 98740 aaatgagagaacacaaaataa 98720
>gb|AC092016.2| Homo sapiens chromosome 1 clone RP11-384I6, complete sequence Length = 86085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 tgctgctgctgcttggcagaa 219 ||||||||||||||||||||| Sbjct: 78446 tgctgctgctgcttggcagaa 78466
>gb|AC006548.22| Homo sapiens chromosome 22 clone p20k14 map 22q11, complete sequence Length = 200149 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaataa 127 ||||||||||||||||||||| Sbjct: 200011 aaatgagagaacacaaaataa 199991
>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete sequence Length = 193159 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaataa 127 ||||||||||||||||||||| Sbjct: 42445 aaatgagagaacacaaaataa 42425
>gb|AC087308.12|AC087308 Homo sapiens 3 BAC CTC-300K6 (CalTech Human BAC Library C) complete sequence Length = 90601 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 tggcaatgaaaaataaatgag 113 ||||||||||||||||||||| Sbjct: 27101 tggcaatgaaaaataaatgag 27121
>gb|AY155151.1| Drosophila straubae isolate 3 mastermind (mast) gene, partial cds Length = 180 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggca 216 ||||||||||||||||||||| Sbjct: 151 tgttgctgctgctgcttggca 131
>gb|AY155150.1| Drosophila straubae isolate 2 mastermind (mast) gene, partial cds Length = 180 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggca 216 ||||||||||||||||||||| Sbjct: 151 tgttgctgctgctgcttggca 131
>gb|AC022509.21|AC022509 Homo sapiens 12 BAC RP11-283G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204228 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 aaataaatgagagaacacaaaataa 127 |||||||||| |||||||||||||| Sbjct: 130232 aaataaatgatagaacacaaaataa 130208
>gb|AC026161.4|AC026161 Homo sapiens chromosome 3 clone RP11-105K13 map 3p, complete sequence Length = 167579 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 tggcaatgaaaaataaatgag 113 ||||||||||||||||||||| Sbjct: 90524 tggcaatgaaaaataaatgag 90504
>ref|XM_317738.2| Anopheles gambiae str. PEST ENSANGP00000010168 (ENSANGG00000007679), partial mRNA Length = 2166 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggca 216 ||||||||||||||||||||| Sbjct: 731 tgttgctgctgctgcttggca 711
>gb|AE003545.3| Drosophila melanogaster chromosome 3L, section 40 of 83 of the complete sequence Length = 282115 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 agtgttgctgctgctgcttgg 214 ||||||||||||||||||||| Sbjct: 156558 agtgttgctgctgctgcttgg 156578
>dbj|AP003900.1| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T171+S39, complete sequences Length = 85444 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaataa 127 ||||||||||||||||||||| Sbjct: 52729 aaatgagagaacacaaaataa 52709
>gb|M92914.1|DROMASTM Drosophila virilis mastermind gene, complete cds Length = 5650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggca 216 ||||||||||||||||||||| Sbjct: 2825 tgttgctgctgctgcttggca 2805
>emb|AL732555.7| Mouse DNA sequence from clone RP23-124I19 on chromosome 4, complete sequence Length = 157653 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 atggcaatgaaaaataaatga 112 ||||||||||||||||||||| Sbjct: 126549 atggcaatgaaaaataaatga 126569
>emb|AL078472.3|HSB11L7C8 Homo sapiens chromosome 21 BAC B11L7C8, complete sequence Length = 75657 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaataa 127 ||||||||||||||||||||| Sbjct: 70399 aaatgagagaacacaaaataa 70379
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaaaattatatggttttat 28 |||||||||||||||||||| Sbjct: 119123 aaaaaattatatggttttat 119104
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 178556 cgagtgttgctgctgctgct 178575
>emb|CT010435.4| Mouse DNA sequence from clone RP23-445H9 on chromosome 12, complete sequence Length = 183240 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gaaaaataaatgagagaaca 119 |||||||||||||||||||| Sbjct: 141417 gaaaaataaatgagagaaca 141436
>gb|AC078855.13| Homo sapiens 3 BAC RP11-558M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173849 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaatgagagaacacaaaata 126 |||||||||||||||||||| Sbjct: 115570 aaatgagagaacacaaaata 115551
>gb|AC112269.3| Mus musculus BAC clone RP24-115O19 from 2, complete sequence Length = 172714 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tgaaaaataaatgagagaac 118 |||||||||||||||||||| Sbjct: 60744 tgaaaaataaatgagagaac 60763
>gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence Length = 163762 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tatgtttagcataattacaa 47 |||||||||||||||||||| Sbjct: 91569 tatgtttagcataattacaa 91588
>emb|AL357042.11| Human DNA sequence from clone RP11-85O2 on chromosome 10, complete sequence Length = 115348 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aagcaccagtgctgacttga 186 |||||||||||||||||||| Sbjct: 13127 aagcaccagtgctgacttga 13108
>emb|AL135791.12| Human DNA sequence from clone RP11-162G10 on chromosome 10 Contains the gene for a novel Kruppel-type zinc finger protein (LOC57209), a tousled-like kinase 1 (TLK1)(KIAA0137, PKU-BETA) pseudogene, a zinc finger protein pseudogene, a novel gene and a CpG island, complete sequence Length = 66975 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 aaaaattatatggttttatatgtt 33 ||||||||||| |||||||||||| Sbjct: 56681 aaaaattatatagttttatatgtt 56658
>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part of a novel gene and a novel gene, complete sequence Length = 109088 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tgaaaaaattatatggtttt 26 |||||||||||||||||||| Sbjct: 36811 tgaaaaaattatatggtttt 36792
>gb|BT023751.1| Drosophila melanogaster RH56202 full insert cDNA Length = 7622 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 622 cgagtgttgctgctgctgct 603
>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4 Length = 313050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tggttttatatgtttagcat 39 |||||||||||||||||||| Sbjct: 105038 tggttttatatgtttagcat 105019
>gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome 14, complete sequence Length = 201412 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 acttgcaaagcaccagtgct 179 |||||||||||||||||||| Sbjct: 94012 acttgcaaagcaccagtgct 94031
>emb|AJ242647.1|ATH242647 Arabidopsis thaliana CM1 gene for plastidic chorismate mutase, exons 1-6 Length = 5099 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 aaataaatgagagaacacaaaata 126 |||| ||||||||||||||||||| Sbjct: 2705 aaattaatgagagaacacaaaata 2728
>gb|AC129097.27| Papio anubis clone rp41-53o7, complete sequence Length = 186113 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tgttaataatggcaatgaaa 103 |||||||||||||||||||| Sbjct: 35129 tgttaataatggcaatgaaa 35110
>gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, complete sequence Length = 158556 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tttattttatacttgcaaag 169 |||||||||||||||||||| Sbjct: 16166 tttattttatacttgcaaag 16147
>dbj|AB158485.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence, clone:BAC clone H1A11 Length = 11330 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 agtgttgctgctgctgcttg 213 |||||||||||||||||||| Sbjct: 6138 agtgttgctgctgctgcttg 6157
>dbj|AB158484.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence, clone:BAC clone H1L17 Length = 11267 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 agtgttgctgctgctgcttg 213 |||||||||||||||||||| Sbjct: 6266 agtgttgctgctgctgcttg 6285
>dbj|AB158483.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence, clone:BAC clone H1D17 Length = 98410 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 agtgttgctgctgctgcttg 213 |||||||||||||||||||| Sbjct: 66059 agtgttgctgctgctgcttg 66078
>ref|NM_169891.1| Drosophila melanogaster CG31209-RA (CG31209), mRNA Length = 2283 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgttgctgctgctgcttgg 214 |||||||||||||||||||| Sbjct: 729 gtgttgctgctgctgcttgg 710
>ref|NM_166030.1| Drosophila melanogaster mastermind CG8118-RB, transcript variant B (mam), mRNA Length = 7591 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 622 cgagtgttgctgctgctgct 603
>gb|AC108162.4| Homo sapiens BAC clone RP11-686G17 from 4, complete sequence Length = 185624 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 atgaaaaataaatgagagaa 117 |||||||||||||||||||| Sbjct: 139204 atgaaaaataaatgagagaa 139185
>gb|AC080078.7| Homo sapiens BAC clone RP11-461L13 from 4, complete sequence Length = 150567 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 atgaaaaataaatgagagaa 117 |||||||||||||||||||| Sbjct: 108310 atgaaaaataaatgagagaa 108329
>ref|NM_080376.1| Drosophila melanogaster mastermind CG8118-RA, transcript variant A (mam), mRNA Length = 7989 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 1020 cgagtgttgctgctgctgct 1001
>gb|AC107023.4| Homo sapiens 12 BAC RP11-115F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150353 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 98 atgaaaaataaatgagagaacacaaaat 125 |||||||||||||||||| ||| ||||| Sbjct: 1448 atgaaaaataaatgagaggacaaaaaat 1421
>gb|AC084290.15| Homo sapiens 12 BAC RP11-568G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 55001 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 98 atgaaaaataaatgagagaacacaaaat 125 |||||||||||||||||| ||| ||||| Sbjct: 54527 atgaaaaataaatgagaggacaaaaaat 54500
>gb|AY089327.1| Drosophila melanogaster AT13703 full insert cDNA Length = 1823 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgttgctgctgctgcttgg 214 |||||||||||||||||||| Sbjct: 165 gtgttgctgctgctgcttgg 146
>gb|AC022429.7| Homo sapiens chromosome 10 clone CTD-2374D18, complete sequence Length = 89582 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aagcaccagtgctgacttga 186 |||||||||||||||||||| Sbjct: 14963 aagcaccagtgctgacttga 14944
>gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence Length = 209211 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tgttgctgctgctgcttggc 215 |||||||||||||||||||| Sbjct: 160333 tgttgctgctgctgcttggc 160314
>dbj|AK045154.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130041E18 product:dachshund 2 (Drosophila), full insert sequence Length = 4455 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ttttgttaataatggcaatg 100 |||||||||||||||||||| Sbjct: 3141 ttttgttaataatggcaatg 3122
>emb|BX511313.20| Mouse DNA sequence from clone RP24-391O14 on chromosome X, complete sequence Length = 178972 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 acaaaataatgaagctcaac 138 |||||||||||||||||||| Sbjct: 167272 acaaaataatgaagctcaac 167291
>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone BACR06M19, complete sequence Length = 183161 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 20275 cgagtgttgctgctgctgct 20294
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tctcttcttgcttgttggct 359 |||||||||||||||||||| Sbjct: 27896145 tctcttcttgcttgttggct 27896126 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaaaaattatatggttttat 28 |||||||||||||||||||| Sbjct: 4712551 aaaaaattatatggttttat 4712570
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgttgctgctgctgcttgg 214 |||||||||||||||||||| Sbjct: 20168404 gtgttgctgctgctgcttgg 20168423
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cttgcttgttggcttgctgt 365 |||||||||||||||||||| Sbjct: 22977348 cttgcttgttggcttgctgt 22977329
>gb|AC068294.26|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 201750 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 taatgaagctcaactgtgac 144 |||||||||||||||||||| Sbjct: 4250 taatgaagctcaactgtgac 4231
>gb|AC008364.5|AC008364 Drosophila melanogaster, chromosome 3R, region 92D-92D, BAC clone BACR09G02, complete sequence Length = 166642 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgttgctgctgctgcttgg 214 |||||||||||||||||||| Sbjct: 87679 gtgttgctgctgctgcttgg 87660
>gb|AC157528.2| Pan troglodytes BAC clone CH251-422M6 from chromosome unknown, complete sequence Length = 154857 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 atgaaaaataaatgagagaacacaaaat 125 |||||||||||||||||| ||| ||||| Sbjct: 116679 atgaaaaataaatgagaggacaaaaaat 116706
>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence Length = 196840 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tgtgacagcattttattttatact 162 |||| ||||||||||||||||||| Sbjct: 81503 tgtgtcagcattttattttatact 81480
>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete sequence Length = 204271 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 atgaaaaataaatgagagaacacaaaat 125 |||||||||||||||||| ||| ||||| Sbjct: 77018 atgaaaaataaatgagaggacaaaaaat 77045
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cttgcttgttggcttgctgt 365 |||||||||||||||||||| Sbjct: 152170 cttgcttgttggcttgctgt 152151
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cttgcttgttggcttgctgt 365 |||||||||||||||||||| Sbjct: 43833 cttgcttgttggcttgctgt 43814
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgttgctgctgctgcttgg 214 |||||||||||||||||||| Sbjct: 61904 gtgttgctgctgctgcttgg 61923
>gb|AC115078.11| Mus musculus chromosome 3, clone RP24-457B22, complete sequence Length = 179789 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 taatgaagctcaactgtgac 144 |||||||||||||||||||| Sbjct: 45370 taatgaagctcaactgtgac 45389
>dbj|AB026657.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXO21 Length = 77401 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 aaataaatgagagaacacaaaata 126 |||| ||||||||||||||||||| Sbjct: 12172 aaattaatgagagaacacaaaata 12149
>ref|XM_311098.2| Anopheles gambiae str. PEST ENSANGP00000017338 (ENSANGG00000014849), partial mRNA Length = 3969 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 486 cgagtgttgctgctgctgct 467
>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence Length = 167116 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 acttgcaaagcaccagtgct 179 |||||||||||||||||||| Sbjct: 139006 acttgcaaagcaccagtgct 138987
>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete sequence Length = 312283 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 aaaaattatatggttttatatgtt 33 ||||||||||| |||||||||||| Sbjct: 40879 aaaaattatatagttttatatgtt 40856
>dbj|AK067885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123F22, full insert sequence Length = 2420 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tctcttcttgcttgttggct 359 |||||||||||||||||||| Sbjct: 396 tctcttcttgcttgttggct 415
>emb|BX936454.25| Zebrafish DNA sequence from clone DKEY-29M11 in linkage group 20, complete sequence Length = 225683 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 atgaaaaataaatgagagaa 117 |||||||||||||||||||| Sbjct: 46745 atgaaaaataaatgagagaa 46764
>emb|BX284679.5| Zebrafish DNA sequence from clone CH211-13N20 in linkage group 20, complete sequence Length = 105328 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 atgaaaaataaatgagagaa 117 |||||||||||||||||||| Sbjct: 71871 atgaaaaataaatgagagaa 71890
>gb|AE003729.3| Drosophila melanogaster chromosome 3R, section 67 of 118 of the complete sequence Length = 232477 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgttgctgctgctgcttgg 214 |||||||||||||||||||| Sbjct: 157631 gtgttgctgctgctgcttgg 157612
>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete sequence Length = 287287 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 151965 cgagtgttgctgctgctgct 151946
>dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-356J5, complete sequence Length = 165678 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tgaaaaaattatatggtttt 26 |||||||||||||||||||| Sbjct: 96074 tgaaaaaattatatggtttt 96055
>gb|AC004701.1|AC004701 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence Length = 143839 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 atgaaaaataaatgagagaa 117 |||||||||||||||||||| Sbjct: 89600 atgaaaaataaatgagagaa 89581
>dbj|AB042297.1| Homo sapiens PTS gene for 6-pyruvoyltetrahydropterin synthase, complete cds Length = 85084 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tgaaaaaattatatggtttt 26 |||||||||||||||||||| Sbjct: 36336 tgaaaaaattatatggtttt 36317
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tctcttcttgcttgttggct 359 |||||||||||||||||||| Sbjct: 27920133 tctcttcttgcttgttggct 27920114 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaaaaattatatggttttat 28 |||||||||||||||||||| Sbjct: 4731335 aaaaaattatatggttttat 4731354
>gb|AC134615.5| Mus musculus BAC clone RP23-148H3 from 8, complete sequence Length = 199454 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 taatggcaatgaaaaataaa 109 |||||||||||||||||||| Sbjct: 100498 taatggcaatgaaaaataaa 100517
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172, complete sequence Length = 127731 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 atcacgagtgttgctgctgctgct 211 ||||| |||||||||||||||||| Sbjct: 20106 atcactagtgttgctgctgctgct 20083
>emb|AL831765.3| Mouse DNA sequence from clone RP23-148O12 on chromosome 4, complete sequence Length = 194457 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 acaaaataatgaagctcaac 138 |||||||||||||||||||| Sbjct: 42250 acaaaataatgaagctcaac 42269
>emb|AL672062.4| Mouse DNA sequence from clone RP23-34D17 on chromosome X, complete sequence Length = 199306 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ttttgttaataatggcaatg 100 |||||||||||||||||||| Sbjct: 152654 ttttgttaataatggcaatg 152673
>emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chromosome X, complete sequence Length = 227581 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 agagaacacaaaataatgaa 131 |||||||||||||||||||| Sbjct: 41898 agagaacacaaaataatgaa 41879
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tgaaaaataaatgagagaac 118 |||||||||||||||||||| Sbjct: 4665 tgaaaaataaatgagagaac 4646
>emb|X54251.1|DMMASTER D. melanogaster neurogenic locus mastermind mRNA for a nuclear protein Length = 6333 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgagtgttgctgctgctgct 211 |||||||||||||||||||| Sbjct: 1011 cgagtgttgctgctgctgct 992
>dbj|D11470.1|TOBTUFB2 Nicotiana sylvestris tufB gene for chloroplast elongation factor TuB, complete cds Length = 3675 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agtgttgctgctgctgcttg 213 |||||||||||||||||||| Sbjct: 1689 agtgttgctgctgctgcttg 1670 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,574,928 Number of Sequences: 3902068 Number of extensions: 7574928 Number of successful extensions: 198883 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 197995 Number of HSP's gapped (non-prelim): 888 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
