ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44b07 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/21 (85%), Positives = 21/21 (100%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 TEVELAY+N+GGILPYVIRN+ Sbjct: 875 TEVELAYFNNGGILPYVIRNL 895
>ACOC_CUCMC (Q42669) Aconitase (EC 4.2.1.3) (Aconitate hydratase) (Citrate| hydro-lyase) (Fragment) Length = 764 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 20/21 (95%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 TEVELAY++HGGIL YVIRN+ Sbjct: 739 TEVELAYFDHGGILQYVIRNL 759
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 20/21 (95%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 TEVELAY++HGGIL YVIRN+ Sbjct: 875 TEVELAYFDHGGILQYVIRNL 895
>ACOC_SOLTU (O04916) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) (Fragment) Length = 616 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 TEVELAY+NHGGIL YVIR + Sbjct: 593 TEVELAYFNHGGILQYVIRQL 613
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 34.3 bits (77), Expect = 0.075 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMAGAQK 298 T E YY HGGIL YV+R MA + K Sbjct: 914 TPGEADYYRHGGILQYVLRQMAASSK 939
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 33.9 bits (76), Expect = 0.098 Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMA 310 T+VEL Y+++GGIL Y+IR MA Sbjct: 867 TDVELTYFHNGGILNYMIRKMA 888
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 33.9 bits (76), Expect = 0.098 Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMA 310 T+VEL Y+++GGIL Y+IR MA Sbjct: 867 TDVELTYFHNGGILNYMIRKMA 888
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 33.9 bits (76), Expect = 0.098 Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMA 310 T+VEL Y+++GGIL Y+IR MA Sbjct: 867 TDVELTYFHNGGILNYMIRKMA 888
>ACOC_CAEEL (Q23500) Probable aconitate hydratase, cytoplasmic (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 887 Score = 33.9 bits (76), Expect = 0.098 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 TEVEL YY +GGIL Y+IR + Sbjct: 865 TEVELTYYRNGGILQYMIRKL 885
>IREB1_RABIT (Q01059) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMA 310 T+VEL Y ++GGIL Y+IR MA Sbjct: 867 TDVELTYLHNGGILNYMIRKMA 888
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMA 310 T+VEL Y+ +GGIL Y+IR MA Sbjct: 867 TDVELTYFLNGGILNYMIRKMA 888
>ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1)| (Aconitase 1) Length = 890 Score = 31.6 bits (70), Expect = 0.49 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 T EL YY + GIL YVIRNM Sbjct: 868 TATELTYYQNDGILHYVIRNM 888
>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)| Length = 934 Score = 31.2 bits (69), Expect = 0.64 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMAGA 304 T E YY +GGIL YV+RNM A Sbjct: 911 TPGEADYYRNGGILQYVLRNMINA 934
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMAGA 304 T E Y+ HGGIL YV+R MA + Sbjct: 914 TPGEADYFRHGGILQYVLRQMAAS 937
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VEL YY HGGIL V+RN Sbjct: 880 VELDYYRHGGILQMVLRN 897
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VEL YY HGGIL V+RN Sbjct: 880 VELDYYRHGGILQMVLRN 897
>ACON_BACSU (P09339) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 908 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIR 319 +EVE+ YY HGGIL V+R Sbjct: 884 SEVEIDYYRHGGILQMVLR 902
>ACON_STAAW (P63434) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VE+ YY HGGIL V+RN Sbjct: 880 VEMDYYRHGGILQMVLRN 897
>ACON_STAAS (Q6G9K9) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VE+ YY HGGIL V+RN Sbjct: 880 VEMDYYRHGGILQMVLRN 897
>ACON_STAAR (Q6GH55) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VE+ YY HGGIL V+RN Sbjct: 880 VEMDYYRHGGILQMVLRN 897
>ACON_STAAN (P99148) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VE+ YY HGGIL V+RN Sbjct: 880 VEMDYYRHGGILQMVLRN 897
>ACON_STAAM (P63433) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VE+ YY HGGIL V+RN Sbjct: 880 VEMDYYRHGGILQMVLRN 897
>ACON_STAAC (Q5HG69) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 369 VELAYYNHGGILPYVIRN 316 VE+ YY HGGIL V+RN Sbjct: 880 VEMDYYRHGGILQMVLRN 897
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 T E YY +GGIL YV+RNM Sbjct: 937 TPGEADYYRNGGILQYVLRNM 957
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -3 Query: 366 ELAYYNHGGILPYVIRNMA 310 EL YY +GGIL YV+R +A Sbjct: 887 ELDYYRNGGILHYVLRKLA 905
>CDK7_MOUSE (Q03147) Cell division protein kinase 7 (EC 2.7.11.22) (EC| 2.7.11.23) (CDK-activating kinase) (CAK) (TFIIH basal transcription factor complex kinase subunit) (39 kDa protein kinase) (P39 Mo15) (Protein-tyrosine kinase MPK-7) (CR4 protein kinas Length = 346 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +2 Query: 83 EDLFKMNTCFITT------TKLPPSRPAPTPGMEMP 172 + LF N C TT TK +RP PTPG ++P Sbjct: 273 QGLFLFNPCTRTTASQALKTKYFSNRPGPTPGCQLP 308
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +1 Query: 88 FVQNEHMFHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 225 F+ F N TP K C ARH S G +RP ++ TLD Sbjct: 329 FLPANFSFKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>ACON_LEGPH (P37032) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) (Major iron-containing protein) (MICP) (IP210) Length = 891 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNMA 310 T EL YY +GGIL YV+R ++ Sbjct: 869 TADELEYYKNGGILQYVLRKIS 890
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 281 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 162 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42
>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)| Length = 936 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 375 TEVELAYYNHGGILPYVIRNM 313 T E YY +GGIL +V+RNM Sbjct: 912 TPGEADYYRNGGILQFVLRNM 932
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 314 WQELRNRRTRPHTLFDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQ 144 +++ R R FD D A+ + V PWT V C G M+ I + + LA A Sbjct: 906 YEQTRRCTLRGMLDFDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAM 965 Query: 143 VDLGG 129 LGG Sbjct: 966 NRLGG 970
>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 2 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 130 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 2 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 130 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1574 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Frame = +3 Query: 303 ELLPCCGLHRAGCLHGCSR-PTPPLC 377 E++ C GC HGCS T PLC Sbjct: 333 EIVNSCEAGNGGCSHGCSHTSTGPLC 358
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +3 Query: 303 ELLPCCGLHRAGCLHGCSRPTP-PLC 377 E++ C + GC HGCS + PLC Sbjct: 225 EIVNSCEANNGGCSHGCSHTSAGPLC 250
>VL2_HPV31 (P17389) Minor capsid protein L2| Length = 466 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +2 Query: 14 TSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALFSVYS 193 TS ++ L+ S++ ST + M+T ++T + P PG+ PA +YS Sbjct: 172 TSGHLLLSSSSI-------STHNYEEIPMDTFIVSTNNENITSSTPIPGVRRPARLGLYS 224
>NUKM_BRAOL (P42027) NADH-ubiquinone oxidoreductase 20 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD) Length = 215 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +2 Query: 2 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALF 181 L + S+ A S++H +LP S T T T PPS AP PG+ A F Sbjct: 12 LPLVLQSHRAAAVSHLHTSLPALSPAT-------TPTSYTRPGPPSTSAPPPGLSKTAEF 64 Query: 182 SV 187 + Sbjct: 65 VI 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,149,338 Number of Sequences: 219361 Number of extensions: 1353728 Number of successful extensions: 3865 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3861 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
