ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl44b06 |
|---|---|
| Clone Library Name | barley_pub |
>RAD_HUMAN (P55042) GTP-binding protein RAD (RAS associated with diabetes)| (RAD1) Length = 308 Score = 31.2 bits (69), Expect = 0.62 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -3 Query: 310 DEQDVQAAVSPGVLTWPAFGFAVQG 236 DE+D+QAA++PG LT A G QG Sbjct: 43 DERDLQAALTPGALTAAAAGTGTQG 67
>CLH2_ARATH (Q9M7I7) Chlorophyllase-2, chloroplast precursor (EC 3.1.1.14)| (AtCLH2) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2) Length = 318 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 311 CCPLAESSTMSPCAPKQMLMSLP 379 CC + SS SP PKQ+L++ P Sbjct: 28 CCKITPSSRASPSPPKQLLVATP 50
>RL35_SHIFL (P0A7Q5) 50S ribosomal protein L35| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 154 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 282 P + VRGAA++ K GG +H H HIL + + R P+ Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46
>RL35_SALTY (P0A7Q3) 50S ribosomal protein L35| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 154 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 282 P + VRGAA++ K GG +H H HIL + + R P+ Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46
>RL35_SALTI (P0A7Q4) 50S ribosomal protein L35| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 154 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 282 P + VRGAA++ K GG +H H HIL + + R P+ Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46
>RL35_ECOLI (P0A7Q1) 50S ribosomal protein L35 (Ribosomal protein A)| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 154 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 282 P + VRGAA++ K GG +H H HIL + + R P+ Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46
>RL35_ECO57 (P0A7Q2) 50S ribosomal protein L35| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 154 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 282 P + VRGAA++ K GG +H H HIL + + R P+ Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46
>PUR9_RHOBA (Q7UKJ8) Bifunctional purine biosynthesis protein purH [Includes:| Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] Length = 523 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 209 GEFNIHIHISLNRKTERRPGQDTRRHCCL 295 GEF +H+SL RKT+ R G++ + L Sbjct: 202 GEFPASMHVSLRRKTQLRYGENPHQRAAL 230
>GLI1_XENLA (Q91690) Zinc finger protein GLI1 (GLI-1) (Fragment)| Length = 1360 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = +2 Query: 77 ASSSPWQKSSTPDHDTHTESTF*QINHTSLLYAEQHAKPNQTKPGEFNIHIHISLNRKT- 253 + SSP + + P +E T N+TS++Y + +Q+KPG + ++LN+ + Sbjct: 1197 SESSPRRMACLPPIQPQSEVT----NNTSMMYYTGQMEMHQSKPGVHKLTTPLNLNQTSC 1252 Query: 254 -ERRPGQDTRRHCCLNIL--LVCCPLAES 331 + GQ H L + CP A + Sbjct: 1253 DGHQHGQYNASHSFLKTVPYTSSCPAANT 1281
>RAD_MOUSE (O88667) GTP-binding protein RAD| Length = 308 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 310 DEQDVQAAVSPGVLTWPAFGFAVQG 236 DE+D+QAA++PG L A G QG Sbjct: 43 DERDLQAALAPGSLATTAAGTRTQG 67
>VINT_BPML5 (P22884) Integrase| Length = 371 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Frame = -3 Query: 331 RLCQRAADEQDVQAAVSPGVLTWPAFGFAVQGYVYVYVELPRFGLVW----FGVLLRVQE 164 R+ Q+AADE+DV+ A++P L V ++ + + + L W FG L+ ++ Sbjct: 162 RIEQKAADERDVE-ALTPEELD------IVAAEIFEHYRIAAYILAWTSLRFGELIELRR 214 Query: 163 RGVVD 149 + +VD Sbjct: 215 KDIVD 219
>TRYDG_DROME (P42276) Trypsin delta/gamma precursor (EC 3.4.21.4)| Length = 253 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 352 CAGAHGGRLCQRAADEQDVQAAVSPGVLTWPAFGFAVQGYVYVYVEL 212 CA A G CQ + V V GV++W +G A Y VY ++ Sbjct: 197 CAAASGKDACQGDSGGPLVSGGVLVGVVSW-GYGCAYSNYPGVYADV 242
>RAD_RAT (P55043) GTP-binding protein RAD (RAS associated with diabetes)| (RAD1) Length = 306 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 310 DEQDVQAAVSPGVLTWPAFGFAVQG 236 DE+D+QAA++PG L A G QG Sbjct: 42 DERDLQAALTPGSLAATAAGTRTQG 66
>SPEE_COREF (Q8FMF7) Probable spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 519 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = -3 Query: 253 GFAVQGYVYVYVELPRFGLVWFGVLLRVQERGVVDLLKGRFRVCIMVRRA*FLPRA 86 G + G + ++ LP W G++ G+++LL F C+++R LPRA Sbjct: 159 GALLGGLAWPFILLP-----WLGMMRGAAAAGMINLLAALFVGCVLLRH--LLPRA 207
>TRYA_DROME (P04814) Trypsin alpha precursor (EC 3.4.21.4)| Length = 256 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 352 CAGAHGGRLCQRAADEQDVQAAVSPGVLTWPAFGFAVQGYVYVYVEL 212 CA A G CQ + V V GV++W +G A Y VY ++ Sbjct: 197 CAAASGKDACQGDSGGPLVSGGVLVGVVSW-GYGCAYSNYPGVYADV 242
>TRYA_DROER (P54624) Trypsin alpha precursor (EC 3.4.21.4)| Length = 256 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 352 CAGAHGGRLCQRAADEQDVQAAVSPGVLTWPAFGFAVQGYVYVYVEL 212 CA A G CQ + V V GV++W +G A Y VY ++ Sbjct: 197 CAAASGKDACQGDSGGPLVSGGVLVGVVSW-GYGCAYSNYPGVYADV 242
>NAHF_PSEU8 (P0A390) Salicylaldehyde dehydrogenase (EC 1.2.1.65)| Length = 483 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 379 REAHQHLLRCAGAHGGRLCQRAADEQDVQAAVSPGVLTWPAFG-FAVQGYVYVYVE 215 ++A QHL RC GG+ D+ D+ AAV V FG F QG + + E Sbjct: 238 QKAAQHLKRCLLELGGKSPLIVLDDADIDAAVKAAV-----FGSFLFQGQICMSTE 288
>NAHF_PSEPU (P0A391) Salicylaldehyde dehydrogenase (EC 1.2.1.65)| Length = 483 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 379 REAHQHLLRCAGAHGGRLCQRAADEQDVQAAVSPGVLTWPAFG-FAVQGYVYVYVE 215 ++A QHL RC GG+ D+ D+ AAV V FG F QG + + E Sbjct: 238 QKAAQHLKRCLLELGGKSPLIVLDDADIDAAVKAAV-----FGSFLFQGQICMSTE 288
>AT11A_MOUSE (P98197) Probable phospholipid-transporting ATPase IH (EC 3.6.3.1)| (ATPase class I type 11A) (ATPase IS) Length = 1187 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -3 Query: 277 GVLTWPAFGFAVQGYVYVYVELPRFGLVWFGVLLRVQERGVVDLLK 140 G + WP + Q YV++ + G W G++L V + D+LK Sbjct: 1053 GGVIWPFLSY--QRMYYVFISMLSSGPAWLGIILLVTVGLLPDVLK 1096
>Y6G1_ENCCU (Q8SV64) Hypothetical protein ECU06_1610| Length = 607 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 382 EREAHQHLLRCAGAHGGRLCQRAADEQDVQA 290 ER+ + +LR HG RLC + EQ ++A Sbjct: 192 ERKREEEMLRKIKEHGERLCTKKNQEQIIEA 222
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +2 Query: 164 LLYAEQHAKPNQTKPGEFNIHIHISLNRKTERRPGQDTR 280 LL A +H++ PGE H +L+ +E+RP ++ R Sbjct: 834 LLAALEHSEQRAGSPGEEQAHSCSTLSLLSEKRPAEEPR 872
>GSPB_DICD3 (Q01563) General secretion pathway protein B| Length = 220 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 283 SPGVLTWPAFGFAVQGYVYVYVELPRFGLVWFG 185 +P V P G+ + GY+ V L F L WFG Sbjct: 4 TPEVKASPQTGYRIPGYLLVVYALLLFTLGWFG 36
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3148 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +2 Query: 68 LMIASSSP--WQKSSTPDHDTHTESTF*QINHTSLLYA 175 L +A P W K STP+++THT S ++H L A Sbjct: 2285 LCLALQQPCVWNKLSTPEYNTHTCSLIYCLHHIILAVA 2322
>TRYB_DROER (P54625) Trypsin beta precursor (EC 3.4.21.4)| Length = 253 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -3 Query: 352 CAGAHGGRLCQRAADEQDVQAAVSPGVLTWPAFGFAVQGYVYVYVEL 212 CA A G CQ + V V GV++W +G A Y VY + Sbjct: 197 CAAASGKDACQGDSGGPLVSGGVLVGVVSW-GYGCAYSNYPGVYASV 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,352,417 Number of Sequences: 219361 Number of extensions: 1092066 Number of successful extensions: 2574 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2572 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
