>CABC1_MOUSE (Q60936) Chaperone-activity of bc1 complex-like, mitochondrial|
           precursor (Chaperone-ABC1-like)
          Length = 645

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 129 DRSLA*TKDQSMNAKHTQWAAPAPPSSSTFHATAFPYDAGRPM 257
           D S A + DQS++  H+Q  APA  SS  F     P  A  PM
Sbjct: 93  DFSAASSLDQSLSPSHSQGPAPAYASSGPFREAGLPGQATSPM 135

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 31/99 (31%), Positives = 41/99 (41%)
 Frame = +3

Query: 42  KTPPSSSKHCTAPITNARDLATNGDYNNNDRSLA*TKDQSMNAKHTQWAAPAPPSSSTFH 221
           + PP ++ H   PI N  DL ++    +   +L   K  S+      +A P PPSS  F 
Sbjct: 678 QVPPEANLH---PIHNP-DLPSSTTLPSGALTLVPAKTPSI------YANPTPPSSHPFT 727

Query: 222 ATAFPYDAGRPMLDAHVLPSTHANPCSATLAIRSAHRRP 338
             A    A  P L  HVL      P SA    R+ H  P
Sbjct: 728 PLADDPTAVGPCLPFHVLHPADYFPLSAEFLTRTRHVPP 766

>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 480

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHR-PSIAPRP 81
           HH+S H       HHHH  P  AP+P
Sbjct: 39  HHNSHHPQHHHHHHHHHHPPPPAPQP 64

>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 481

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHR-PSIAPRP 81
           HH+S H       HHHH  P  AP+P
Sbjct: 39  HHNSHHPQHHHHHHHHHHPPPPAPQP 64

>UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein)|
          Length = 376

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHRPSIAPRP 81
           HH S H   S+++ HHHRP   P P
Sbjct: 345 HHYSHH--QSQSQQHHHRPQSPPPP 367

>YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I|
          Length = 319

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 147 TKDQSMNAKH--TQWAAPAPPSSSTFHATAFPYDAGRPM---LDAHVLPSTHANPCSATL 311
           T +   NA H   Q    + P+S+T + T    +  +     +D   LPSTHANP +A  
Sbjct: 126 TANAHANAHHQPAQTTTTSIPTSATDNYTTVNGNVNQSYSKGIDGTALPSTHANPVAAPS 185

Query: 312 AIRSAH 329
              + H
Sbjct: 186 TATTQH 191

>RURE_PSEOL (P17052) Rubredoxin-NAD(+) reductase (EC 1.18.1.1)|
          Length = 385

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 15  FSAHTIKPYKTPPSSSKHCTAPIT-NARDLATNGDYNNNDRSLA 143
           FS  ++ PY+ PP S    T+ I  +A  L   G Y NN+ +++
Sbjct: 31  FSRESVAPYQRPPLSKAFLTSEIAESAVPLKPEGFYTNNNITIS 74

>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (HFK1)
          Length = 477

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHR--PSIAPRP 81
           HH+S H       HHHH   P  AP+P
Sbjct: 39  HHNSHHPQHHHHHHHHHHHPPPPAPQP 65

>IPL1_CANAL (Q59S66) Spindle assembly checkpoint kinase (EC 2.7.11.1) (Aurora|
           kinase)
          Length = 530

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
 Frame = +3

Query: 33  KPYKTPPSSSKHC-TAPITNARDLATNGDYNNNDRSLA*TKDQSMN-------AKHTQWA 188
           KP    P++  H  T P    R+ AT    NNN+R+    ++ ++N        K++  +
Sbjct: 50  KPQHIKPNTHSHTFTTPTPKTRNTATTTTTNNNNRNNHQYRNPNLNTSLVFTPTKNSSSS 109

Query: 189 APAPPSSSTFHATAFPYDAGRPMLDAHVLPSTHANPCSATLAIRSAHR 332
           + +  SSS   ++ F  +        H   ++H    S +    SA++
Sbjct: 110 SSSSHSSSLLSSSPFVEEPENQPESNHTRATSHYRTTSTSQYKSSANK 157

>CUBN_HUMAN (O60494) Cubilin precursor (Intrinsic factor-cobalamin receptor)|
           (Intrinsic factor-vitamin B12 receptor) (460 kDa
           receptor) (Intestinal intrinsic factor receptor)
          Length = 3623

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -3

Query: 289 ACVEGRTCASSMGR------PASYGKAVAWKVLDDGGAGAAHCV 176
           +C  G TC ++MG       P +YG   A K  D  G   A CV
Sbjct: 183 SCQNGGTCVNTMGSYSCHCPPETYGPQCASKYDDCEGGSVARCV 226

>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)|
           (Transcription factor BF-2) (Brain factor 2) (BF2)
           (HFK2)
          Length = 469

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHR--PSIAPRP 81
           HH+S H       HHHH   P  AP+P
Sbjct: 39  HHNSHHPQHHHHHHHHHHHPPPPAPQP 65

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 24.3 bits (51), Expect(2) = 3.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 71   HRAHHQRPRPGNKRRLQQQR 130
            H  HH  P P +K R  Q+R
Sbjct: 2214 HHHHHHHPPPPDKDRYAQER 2233



 Score = 22.7 bits (47), Expect(2) = 3.9
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 13   DSRHTPSSRTKHHHHRP 63
            D +H       HHHH P
Sbjct: 2205 DRKHRQHHHHHHHHHHP 2221

>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)|
          Length = 428

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHRPSIAPRP 81
           HH   H  ++   HHHH P   P P
Sbjct: 146 HHHHHHHHAAHHHHHHHPPQPPPPP 170



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHRPSIAPRP 81
           HH   H   +   HHHH P   P P
Sbjct: 145 HHHHHHHHHAAHHHHHHHPPQPPPP 169

>VIT1_PERAM (Q9U8M0) Vitellogenin 1 precursor (Vg-1)|
          Length = 1896

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +3

Query: 54   SSSKHCTAPITNARDLATNGDYNNNDRSLA*TKDQSMNAKHTQWAAP-------APPSSS 212
            SSS+  ++  +++ + A+N D +NN  S   +   S ++  +   AP       +PP +S
Sbjct: 1755 SSSESSSSSSSSSSESASNSDLHNNSTSS--SSSSSSSSSESAEGAPEKSSRKTSPPQTS 1812

Query: 213  TFHAT 227
            T H T
Sbjct: 1813 TLHRT 1817

>VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (Minor|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP42]
          Length = 1912

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 1    KQHHDSRHTPSSRTKHHHHRP 63
            K  H SR +P+SR    HHRP
Sbjct: 1403 KAAHSSRRSPTSRAASAHHRP 1423

>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase-like 1)
          Length = 752

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 20/73 (27%), Positives = 25/73 (34%)
 Frame = +3

Query: 36  PYKTPPSSSKHCTAPITNARDLATNGDYNNNDRSLA*TKDQSMNAKHTQWAAPAPPSSST 215
           P   P S S H  AP +  R     G    +       +D+             PP+S T
Sbjct: 537 PRVPPASPSSHSLAPPSGERSRLARGSTIRSTFHGGQVRDRRAGGGGGGGVQNGPPASPT 596

Query: 216 FHATAFPYDAGRP 254
               A P  AGRP
Sbjct: 597 LAHEAAPLPAGRP 609

>RDRP_SHMV (P89202) RNA-directed RNA polymerase (EC 2.7.7.48) (186 kDa|
           protein) [Contains: Methyltransferase/RNA helicase
           (MT/HEL) (128 kDa protein)]
          Length = 1629

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 15  FSAHTIKPYKTPPSSSKHCTAPITNARDLATNGDYNNNDRSLA*TKDQSMNAKHTQWAAP 194
           F AH +K       S  HC  P  +ARDLA N +Y  +  +   ++ +  +  + QW   
Sbjct: 109 FPAHMMKG-----RSYVHCCNPALDARDLARNENYRISIENYL-SRFEDKSGDYCQWQRK 162

Query: 195 APPSS 209
            P  S
Sbjct: 163 KPKVS 167

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +3

Query: 36  PYKTPPS--SSKHCTAPITNARDLATNGDYNNNDRSLA*TKDQSMNAKHTQWAAPAPPSS 209
           P  TPPS  ++     P T+      N   N +D S+   + Q  N     + AP PP S
Sbjct: 21  PAATPPSAGAAPGAATPPTSGPPTPNNNSNNGSDPSI---QQQQQNVAPHPYGAPPPPGS 77

>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)|
          Length = 387

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHRPSIAPRP 81
           HH+S H P     HHHH P    +P
Sbjct: 38  HHNSHH-PHHHHHHHHHHPPPPQQP 61

>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1)
          Length = 451

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHRPSIAPRP 81
           HH+S H P     HHHH P    +P
Sbjct: 38  HHNSHH-PHHHHHHHHHHPPPPQQP 61

>ADAM7_RAT (Q63180) ADAM 7 precursor (A disintegrin and metalloproteinase|
           domain 7) (Epididymal apical protein I) (EAP I)
          Length = 789

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 328 CADLMASVAEQGFACVEGRTCAS 260
           C D    V + GF CVEG  C S
Sbjct: 427 CCDAHKCVLKPGFTCVEGECCES 449

>ADAM7_MOUSE (O35227) ADAM 7 precursor (A disintegrin and metalloproteinase|
           domain 7)
          Length = 788

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 328 CADLMASVAEQGFACVEGRTCAS 260
           C D    V + GF CVEG  C S
Sbjct: 427 CCDAHKCVLKPGFTCVEGECCES 449

>OAF_DROME (Q9NLA6) Out at first protein [Contains: Out at first short|
           protein]
          Length = 487

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 1   KQHHDSR--HTPSSRTKHHHHRPSIAP 75
           + HH S+  H PS + K H H   +AP
Sbjct: 424 QSHHQSQSQHKPSRQQKQHQHHSQVAP 450

>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)|
          Length = 149

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHH 57
           HHD RH       HHHH
Sbjct: 123 HHDHRHHHHEHDHHHHH 139

>FOXO3_HUMAN (O43524) Forkhead box protein O3A (Forkhead in|
           rhabdomyosarcoma-like 1) (AF6q21 protein)
          Length = 673

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 51  PSSSKHCTAPITNARDLATNGDYNNNDRSLA*TKDQSMNAKHTQWAAPAPPSSSTFHATA 230
           PS SK CT  +    D+A  G  N ND       D  ++      + P+P       +++
Sbjct: 356 PSVSKPCTVELPRLTDMA--GTMNLNDGLTENLMDDLLDNITLPPSQPSPTGGLMQRSSS 413

Query: 231 FPY 239
           FPY
Sbjct: 414 FPY 416

>PER3_MOUSE (O70361) Period circadian protein 3 (mPER3)|
          Length = 1113

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 159 SMNAKHTQWAAPAPPSSSTFHATAFPYDAGRPMLDAHVLPSTHANPCSATLAIRSA 326
           S   KH +   PAP  +S+  A   P+  G    + H  PS   +P  A LA  SA
Sbjct: 724 SERQKHKRKKLPAPVDTSSPGAHLCPHVTGLLPDEQHWGPSASPSPLGAGLAFPSA 779

>YAV2_XANCV (P14728) Hypothetical 82 kDa avirulence protein in avrBs3 region|
          Length = 784

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 289 ACVEGRTCASSMGRPASYGKAVAWKVLDDGGAGA 188
           AC      ASS GRP    KA  W +++   AG+
Sbjct: 67  ACGNPFFTASSAGRPPRQAKATRWSLVNAANAGS 100

>CLR4_SCHPO (O60016) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase)
           (H3-K9-HMTase) (Cryptic loci regulator 4)
          Length = 490

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 7   HHDSRHTPSSRTKHHHHRPSIAPR 78
           HH S   P+SR KH H      PR
Sbjct: 75  HHASNPHPNSRQKHQHQTSKSVPR 98

>KCMA1_RAT (Q62976) Calcium-activated potassium channel alpha subunit 1|
           (Calcium-activated potassium channel, subfamily M, alpha
           subunit 1) (Maxi K channel) (MaxiK) (BK channel)
           (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog)
           (Slo homolog) (Slo-alp
          Length = 1210

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 159 SMNAKHTQWAAPAPPSSSTFHATAFPYDAGRPMLDAHVLPSTHANPCSA 305
           +++A H    A +  SSS+  +++       P +DA ++P T   PC +
Sbjct: 34  NIHANHLSLDASSSSSSSSSSSSSSSSSVHEPKMDALIIPVTMEVPCDS 82

>KN8R_YEAST (P53739) Probable serine/threonine-protein kinase YNR047W (EC|
           2.7.11.1)
          Length = 893

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 171 KHTQWAAPAPPSSSTFHATAFPYDAGRPMLDAH-VLPSTHANPCSATLAIRSAHRR 335
           +H+   +P   SSS+F  T      GR    +  ++PS ++N  S+T AIR  + R
Sbjct: 169 EHSNCGSPIMLSSSSFSPTVARTGTGRRRSPSTPIMPSQNSNNSSSTSAIRPNNYR 224

>AAT1_HUMAN (Q7Z4T9) AMY-1-associating protein expressed in testis 1 (AAT-1)|
          Length = 603

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 15  FSAHTIKPYKTPPSSSKHCTAPITNARDLATNGDYNNND 131
           ++    +PY  PP+S+KH + P  +   + T  DY + D
Sbjct: 163 YAVSKAEPYTFPPTSTKHLSIP--SKSTVGTQTDYRDAD 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,808,530
Number of Sequences: 219361
Number of extensions: 664082
Number of successful extensions: 2257
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2229
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)