>GID_SYMTH (Q67PC6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 447

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 171 SFPTQTIYRSLLHHQSSADHQWFQPLSLSLFWCPPL 278
           +FP +T   SLLH+ + AD + FQP++++    PPL
Sbjct: 375 TFPRETAIGSLLHYITHADPEHFQPMNIAFGLMPPL 410

>GID_LISMO (Q8Y7K1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 434

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 174 FPTQTIYRSLLHHQSSADHQWFQPLSLSLFWCPPL 278
           FPT+T   SL H+ +SA  + FQP++++    P L
Sbjct: 371 FPTETAIGSLAHYITSASKKSFQPMNVNFGLFPEL 405

>GID_LISMF (Q720E5) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 434

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 FPTQTIYRSLLHHQSSADHQWFQPLSLSLFWCPPL 278
           FP +T   SL H+ +SA  + FQP++++    P L
Sbjct: 371 FPAETAIGSLAHYITSASKKSFQPMNVNFGLFPEL 405

>TOPB1_HUMAN (Q92547) DNA topoisomerase 2-binding protein 1 (DNA topoisomerase|
           II-binding protein 1) (DNA topoisomerase IIbeta-binding
           protein 1) (TopBP1)
          Length = 1522

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 7   RADDGHFI*QPD-KIHHSPNLSITNKIRRNQELFSHNRRELQTQTQT 144
           RAD+ HF+ +   K   S    ITN I  N +   H    LQT  +T
Sbjct: 730 RADESHFLIENSTKEERSLETEITNGINLNSDTAEHPGTRLQTHRKT 776

>GID_SYNEL (P59109) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 457

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 126 SNSNSNQSYKHLLTFSFPTQTIYRSLLHHQSSADHQWFQPLSLSLFWCPPL 278
           + +N+ +  + L     P  T+  +L H+ S+A+ + FQP+  +    PPL
Sbjct: 357 AGTNAARLARGLAPLVLPPTTMAGALFHYISTAESKTFQPMPPNFGILPPL 407

>GID_STRP8 (Q8P106) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 448

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 135 NSNQSYKHLLTFSFPTQTIYRSLLHHQSSADHQWFQPLSLS 257
           N+ + +K      FP  T   SL H+ + AD + FQP++++
Sbjct: 371 NAARLFKREEALIFPQTTAIGSLPHYVTHADSKHFQPMNVN 411

>GID_STRP6 (Q5XC46) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 448

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 135 NSNQSYKHLLTFSFPTQTIYRSLLHHQSSADHQWFQPLSLS 257
           N+ + +K      FP  T   SL H+ + AD + FQP++++
Sbjct: 371 NAARLFKREEALIFPQTTAIGSLPHYVTHADSKHFQPMNVN 411

>GID_STRP3 (Q8K7G4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 448

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 135 NSNQSYKHLLTFSFPTQTIYRSLLHHQSSADHQWFQPLSLS 257
           N+ + +K      FP  T   SL H+ + AD + FQP++++
Sbjct: 371 NAARLFKREEALIFPQTTAIGSLPHYVTHADSKHFQPMNVN 411

>GID_STRP1 (Q99ZL9) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 448

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 135 NSNQSYKHLLTFSFPTQTIYRSLLHHQSSADHQWFQPLSLS 257
           N+ + +K      FP  T   SL H+ + AD + FQP++++
Sbjct: 371 NAARLFKREEALIFPQTTAIGSLPHYVTHADSKHFQPMNVN 411

>GID_STRR6 (Q8DQ51) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 444

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 135 NSNQSYKHLLTFSFPTQTIYRSLLHHQSSADHQWFQPLSLS 257
           N+ + +K      FP  T   SL H+ + AD + FQP++++
Sbjct: 368 NAARLFKEESEVIFPETTAIGSLAHYITHADSKHFQPMNVN 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,550,652
Number of Sequences: 219361
Number of extensions: 566574
Number of successful extensions: 2080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2080
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)