ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence 78 2e-11
2gb|AY105873.1| Zea mays PCO094136 mRNA sequence 78 2e-11
3ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
4dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete se... 42 1.2
6emb|AL365189.15| Human DNA sequence from clone RP11-595C20 on ch... 42 1.2
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
8dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
9dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, com... 40 4.8
11gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, comp... 40 4.8
12emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in... 40 4.8
13gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, comp... 40 4.8
14gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome... 40 4.8
15gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 40 4.8
16emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in... 40 4.8
17gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 4.8
18emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chr... 40 4.8 
>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence
          Length = 1585

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                   
Query: 309  gaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatca 363
            |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 1327 gaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatca 1273
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>gb|AY105873.1| Zea mays PCO094136 mRNA sequence
          Length = 809

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                  
Query: 309 gaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatca 363
           |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 513 gaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatca 459
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>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 359
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465

              
Query: 360  at 361
            ||
Sbjct: 3464 at 3463
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>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full
            insert sequence
          Length = 1629

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 359
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124

              
Query: 360  at 361
            ||
Sbjct: 1123 at 1122
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>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 99     aaatattagtcaacaatggtacaaa 123
              |||||||||||||||||| ||||||
Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319
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>emb|AL365189.15| Human DNA sequence from clone RP11-595C20 on chromosome 6, complete
             sequence
          Length = 97534

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    tcaaaattatagtacaatact 41
             |||||||||||||||||||||
Sbjct: 39882 tcaaaattatagtacaatact 39902
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 300      gaacttagggaagtcattcctacagcgctctggtacaagtc 340
                |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010
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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 300   gaacttagggaagtcattcctacagcgctctggtacaagtc 340
             |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892
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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 300    gaacttagggaagtcattcctacagcgctctggtacaagtc 340
              |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852
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>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ctttctcaatattgtcttcc 270
             ||||||||||||||||||||
Sbjct: 12002 ctttctcaatattgtcttcc 11983
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>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ctttctcaatattgtcttcc 270
              ||||||||||||||||||||
Sbjct: 195772 ctttctcaatattgtcttcc 195753
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>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18,
              complete sequence
          Length = 164758

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    tgtttcaggctctctttctc 257
              ||||||||||||||||||||
Sbjct: 128434 tgtttcaggctctctttctc 128415
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>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tatgtttcaggctctctttc 255
             ||||||||||||||||||||
Sbjct: 64829 tatgtttcaggctctctttc 64810
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>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tacaaaatattagtcaacaa 114
              ||||||||||||||||||||
Sbjct: 131842 tacaaaatattagtcaacaa 131823
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>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  tatgtttcaggctctctttc 255
            ||||||||||||||||||||
Sbjct: 2684 tatgtttcaggctctctttc 2665
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>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
             complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tgtttcaggctctctttctc 257
             ||||||||||||||||||||
Sbjct: 91226 tgtttcaggctctctttctc 91207
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      acaaaatattagtcaacaat 115
               ||||||||||||||||||||
Sbjct: 2555987 acaaaatattagtcaacaat 2555968
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>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete
             sequence
          Length = 172826

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aaatattagtcaacaatggt 118
             ||||||||||||||||||||
Sbjct: 59691 aaatattagtcaacaatggt 59710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,452,330
Number of Sequences: 3902068
Number of extensions: 3452330
Number of successful extensions: 54042
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53978
Number of HSP's gapped (non-prelim): 64
length of query: 363
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 341
effective length of database: 17,147,199,772
effective search space: 5847195122252
effective search space used: 5847195122252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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